Wall clock time and date at job start Tue Mar 31 2020 14:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35275 * 126.71130 * 2 1 4 4 C 1.41927 * 103.95950 * 180.11290 * 3 2 1 5 5 O 1.35706 * 126.88252 * 179.91061 * 4 3 2 6 6 C 1.42898 * 117.00443 * 179.70638 * 5 4 3 7 7 C 1.50703 * 109.47171 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64665 * 359.68696 * 9 7 6 11 11 C 1.55123 * 104.72450 * 155.81937 * 10 9 7 12 12 H 1.09002 * 111.19286 * 279.19624 * 11 10 9 13 13 N 1.46506 * 110.90753 * 155.27645 * 11 10 9 14 14 C 1.36930 * 119.99785 * 92.98040 * 13 11 10 15 15 H 1.07999 * 120.00748 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99595 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00235 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47415 * 89.99875 * 18 16 14 20 20 H 1.48495 * 109.47300 * 210.00208 * 18 16 14 21 21 H 1.48508 * 109.46933 * 329.99835 * 18 16 14 22 22 C 1.55154 * 101.48369 * 37.29852 * 11 10 9 23 23 C 1.53007 * 110.72156 * 205.97204 * 22 11 10 24 24 C 1.53003 * 110.87744 * 82.76702 * 22 11 10 25 25 C 1.47018 * 125.65319 * 180.02562 * 9 7 6 26 26 N 1.30622 * 106.24267 * 359.64857 * 4 3 2 27 27 O 1.20914 * 111.49559 * 0.22646 * 26 4 3 28 28 H 1.08995 * 109.47398 * 180.25591 * 1 2 3 29 29 H 1.08997 * 109.46578 * 300.26160 * 1 2 3 30 30 H 1.09001 * 109.46816 * 60.25733 * 1 2 3 31 31 H 1.07997 * 128.02033 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47259 * 300.00350 * 6 5 4 33 33 H 1.09001 * 109.47074 * 60.00372 * 6 5 4 34 34 H 1.09003 * 110.37092 * 274.75069 * 10 9 7 35 35 H 1.08999 * 110.36866 * 37.07050 * 10 9 7 36 36 H 0.96997 * 119.99430 * 272.97491 * 13 11 10 37 37 H 0.97005 * 120.00049 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47281 * 174.97840 * 23 22 11 39 39 H 1.08999 * 109.46817 * 294.97260 * 23 22 11 40 40 H 1.09000 * 109.46973 * 54.97390 * 23 22 11 41 41 H 1.08996 * 109.46476 * 304.93894 * 24 22 11 42 42 H 1.09003 * 109.46679 * 64.93379 * 24 22 11 43 43 H 1.08993 * 109.47265 * 184.93872 * 24 22 11 44 44 H 1.09008 * 109.87927 * 300.43574 * 25 9 7 45 45 H 1.09004 * 109.88432 * 61.44111 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9989 0.4511 -0.0014 7 6 7.1881 1.3768 -0.0046 8 8 7.0214 2.5780 -0.0103 9 7 8.4368 0.8697 -0.0021 10 6 8.7821 -0.5634 0.0102 11 6 10.2040 -0.6317 -0.6061 12 1 10.1640 -0.5922 -1.6947 13 7 10.9137 -1.8303 -0.1520 14 6 10.8650 -2.9781 -0.8969 15 1 10.3032 -3.0002 -1.8190 16 6 11.5379 -4.1136 -0.4669 17 7 11.4908 -5.2172 -1.1827 18 14 12.5091 -4.0758 1.1283 19 1 11.6271 -4.4746 2.2545 20 1 13.6509 -5.0207 1.0352 21 1 13.0215 -2.7019 1.3634 22 6 10.8539 0.6524 -0.0265 23 6 11.9748 1.1518 -0.9405 24 6 11.3814 0.4057 1.3884 25 6 9.6802 1.6542 -0.0042 26 7 3.4765 -0.7622 0.0037 27 8 2.3085 -1.0749 0.0053 28 1 -0.3634 -1.0276 0.0046 29 1 -0.3632 0.5179 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0313 2.1263 -0.0004 32 1 6.0274 -0.1735 0.8916 33 1 6.0282 -0.1817 -0.8884 34 1 8.7905 -0.9429 1.0320 35 1 8.0773 -1.1288 -0.5995 36 1 11.4180 -1.8105 0.6763 37 1 11.9613 -6.0106 -0.8824 38 1 12.3564 2.1003 -0.5625 39 1 12.7807 0.4183 -0.9611 40 1 11.5857 1.2926 -1.9489 41 1 10.5757 0.0227 2.0147 42 1 12.1912 -0.3229 1.3522 43 1 11.7528 1.3415 1.8060 44 1 9.7171 2.2880 -0.8903 45 1 9.7318 2.2696 0.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995927828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:32 Heat of formation + Delta-G solvation = 16.135320 kcal Electronic energy + Delta-G solvation = -27503.982039 eV Core-core repulsion = 23526.454125 eV Total energy + Delta-G solvation = -3977.527914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.09089 -40.38051 -39.10858 -37.77484 -34.37999 -34.09248 -33.38390 -32.72066 -31.21586 -29.28639 -28.12231 -28.00329 -27.23662 -25.77529 -23.84003 -23.61245 -21.76457 -21.30176 -19.39167 -18.97020 -18.13450 -18.04912 -17.74996 -17.02642 -16.56599 -16.47039 -15.73674 -15.37047 -14.59869 -14.31545 -14.19453 -14.14645 -13.88529 -13.77796 -13.62937 -13.42824 -13.20125 -12.94375 -12.79105 -12.68364 -12.28504 -12.18130 -11.86052 -11.72811 -11.48424 -11.43309 -11.30744 -11.08078 -10.69967 -10.64157 -10.39222 -10.06458 -9.88211 -9.75978 -9.66870 -9.38282 -9.10333 -8.55941 -7.45667 -5.89937 -3.28234 1.18863 2.07373 2.15156 2.53931 2.86251 3.26257 3.28557 3.30638 3.37294 3.98789 4.32524 4.46460 4.52852 4.70184 4.73672 4.85062 4.90223 4.90868 4.97800 4.99205 5.00194 5.24825 5.29298 5.38110 5.38647 5.50253 5.57153 5.63389 5.64121 5.73147 5.82611 5.92094 6.00244 6.10639 6.11958 6.21408 6.34836 6.39533 6.48224 6.65166 6.79292 7.50852 7.84047 8.04059 8.11092 8.28599 9.04978 9.76810 9.94869 11.27631 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003045 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.350218 B = 9193.427448 C =10811.472459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.234 4.234 4 C 0.212 3.788 5 O -0.259 6.259 6 C 0.050 3.950 7 C 0.532 3.468 8 O -0.531 6.531 9 N -0.608 5.608 10 C 0.065 3.935 11 C 0.188 3.812 12 H 0.080 0.920 13 N -0.733 5.733 14 C -0.255 4.255 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.880 3.120 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.139 4.139 25 C 0.124 3.876 26 N -0.407 5.407 27 O 0.101 5.899 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.367 0.633 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 13.261 3.653 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.256 4.256 4 C 0.014 3.986 5 O -0.164 6.164 6 C -0.028 4.028 7 C 0.319 3.681 8 O -0.408 6.408 9 N -0.343 5.343 10 C -0.060 4.060 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.375 5.375 14 C -0.384 4.384 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.574 5.574 18 Si 0.710 3.290 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.092 4.092 23 C -0.187 4.187 24 C -0.196 4.196 25 C 0.002 3.998 26 N -0.134 5.134 27 O 0.040 5.960 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.196 0.804 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.202 0.798 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.339 12.996 3.469 20.402 hybrid contribution 0.544 0.337 1.181 1.344 sum -14.795 13.334 4.651 20.453 Atomic orbital electron populations 1.20377 0.83532 1.04968 1.04321 1.24361 0.96506 0.85656 1.00993 1.21764 0.88279 1.01675 1.13858 1.22055 0.88406 0.88034 1.00065 1.86239 1.10062 1.30950 1.89107 1.22460 0.81859 0.93408 1.05086 1.19458 0.82733 0.88400 0.77513 1.90723 1.85156 1.15097 1.49799 1.48309 1.04313 1.09470 1.72208 1.23641 1.01290 0.78917 1.02171 1.21338 0.88017 0.85549 0.97501 0.90239 1.42759 1.59137 1.08879 1.26736 1.19072 1.27620 0.87199 1.04532 0.88977 1.24670 1.00008 0.95688 0.98147 1.69694 1.46830 1.01796 1.39041 0.86647 0.80387 0.77263 0.84739 1.20893 1.21523 1.20190 1.21927 0.94400 0.96014 0.96895 1.21699 0.97914 1.00652 0.98457 1.21783 1.01452 1.01572 0.94812 1.22061 0.82021 0.93784 1.01967 1.74231 0.97811 1.14189 1.27149 1.84822 1.10303 1.31956 1.68871 0.89563 0.88925 0.88901 0.80441 0.88519 0.88321 0.90924 0.90592 0.79771 0.92835 0.92959 0.91394 0.92428 0.92482 0.91561 0.92642 0.91200 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.01 -0.10 7.48 -35.36 -0.26 -0.36 16 3 C -0.23 -2.40 11.11 -39.23 -0.44 -2.84 16 4 C 0.21 2.93 8.01 -16.66 -0.13 2.80 16 5 O -0.26 -4.00 9.74 -38.73 -0.38 -4.38 16 6 C 0.05 0.73 5.14 36.01 0.19 0.91 16 7 C 0.53 8.67 7.93 -10.98 -0.09 8.58 16 8 O -0.53 -10.24 16.83 -14.35 -0.24 -10.48 16 9 N -0.61 -9.28 3.32 -170.38 -0.57 -9.85 16 10 C 0.07 1.04 6.08 -2.41 -0.01 1.03 16 11 C 0.19 3.28 2.97 -65.66 -0.20 3.08 16 12 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 13 N -0.73 -15.64 4.95 -51.24 -0.25 -15.89 16 14 C -0.25 -6.66 10.44 -15.06 -0.16 -6.81 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 17 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 18 Si 0.88 20.90 27.74 -169.99 -4.71 16.19 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 22 C -0.09 -1.31 0.85 -152.67 -0.13 -1.44 16 23 C -0.13 -1.71 8.48 37.16 0.32 -1.39 16 24 C -0.14 -1.94 7.55 37.16 0.28 -1.66 16 25 C 0.12 1.76 6.04 -3.07 -0.02 1.74 16 26 N -0.41 -5.74 11.54 30.38 0.35 -5.39 16 27 O 0.10 1.19 11.19 17.07 0.19 1.38 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 1.35 7.85 -51.93 -0.41 0.94 16 34 H 0.07 1.17 7.71 -51.93 -0.40 0.77 16 35 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 36 H 0.37 7.70 3.32 -40.82 -0.14 7.57 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.06 0.81 7.44 -51.93 -0.39 0.42 16 42 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.97 7.82 -51.92 -0.41 0.56 16 45 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.18 371.79 -6.30 -39.48 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.69 Total: 6.53 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.37 Total: 3.96 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.31 Total: -58.28 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.43 Total: -13.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.18 -6.30 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995927828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds