Wall clock time and date at job start Tue Mar 31 2020 14:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35275 * 126.71130 * 2 1 4 4 C 1.41927 * 103.95950 * 180.11290 * 3 2 1 5 5 O 1.35706 * 126.88252 * 179.91061 * 4 3 2 6 6 C 1.42898 * 117.00443 * 179.70638 * 5 4 3 7 7 C 1.50703 * 109.47171 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64665 * 359.68696 * 9 7 6 11 11 C 1.55123 * 104.72450 * 155.81937 * 10 9 7 12 12 H 1.09002 * 111.19286 * 279.19624 * 11 10 9 13 13 N 1.46506 * 110.90753 * 155.27645 * 11 10 9 14 14 C 1.36930 * 119.99785 * 92.98040 * 13 11 10 15 15 H 1.07999 * 120.00748 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99595 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00235 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47415 * 89.99875 * 18 16 14 20 20 H 1.48495 * 109.47300 * 210.00208 * 18 16 14 21 21 H 1.48508 * 109.46933 * 329.99835 * 18 16 14 22 22 C 1.55154 * 101.48369 * 37.29852 * 11 10 9 23 23 C 1.53007 * 110.72156 * 205.97204 * 22 11 10 24 24 C 1.53003 * 110.87744 * 82.76702 * 22 11 10 25 25 C 1.47018 * 125.65319 * 180.02562 * 9 7 6 26 26 N 1.30622 * 106.24267 * 359.64857 * 4 3 2 27 27 O 1.20914 * 111.49559 * 0.22646 * 26 4 3 28 28 H 1.08995 * 109.47398 * 180.25591 * 1 2 3 29 29 H 1.08997 * 109.46578 * 300.26160 * 1 2 3 30 30 H 1.09001 * 109.46816 * 60.25733 * 1 2 3 31 31 H 1.07997 * 128.02033 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47259 * 300.00350 * 6 5 4 33 33 H 1.09001 * 109.47074 * 60.00372 * 6 5 4 34 34 H 1.09003 * 110.37092 * 274.75069 * 10 9 7 35 35 H 1.08999 * 110.36866 * 37.07050 * 10 9 7 36 36 H 0.96997 * 119.99430 * 272.97491 * 13 11 10 37 37 H 0.97005 * 120.00049 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47281 * 174.97840 * 23 22 11 39 39 H 1.08999 * 109.46817 * 294.97260 * 23 22 11 40 40 H 1.09000 * 109.46973 * 54.97390 * 23 22 11 41 41 H 1.08996 * 109.46476 * 304.93894 * 24 22 11 42 42 H 1.09003 * 109.46679 * 64.93379 * 24 22 11 43 43 H 1.08993 * 109.47265 * 184.93872 * 24 22 11 44 44 H 1.09008 * 109.87927 * 300.43574 * 25 9 7 45 45 H 1.09004 * 109.88432 * 61.44111 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9989 0.4511 -0.0014 7 6 7.1881 1.3768 -0.0046 8 8 7.0214 2.5780 -0.0103 9 7 8.4368 0.8697 -0.0021 10 6 8.7821 -0.5634 0.0102 11 6 10.2040 -0.6317 -0.6061 12 1 10.1640 -0.5922 -1.6947 13 7 10.9137 -1.8303 -0.1520 14 6 10.8650 -2.9781 -0.8969 15 1 10.3032 -3.0002 -1.8190 16 6 11.5379 -4.1136 -0.4669 17 7 11.4908 -5.2172 -1.1827 18 14 12.5091 -4.0758 1.1283 19 1 11.6271 -4.4746 2.2545 20 1 13.6509 -5.0207 1.0352 21 1 13.0215 -2.7019 1.3634 22 6 10.8539 0.6524 -0.0265 23 6 11.9748 1.1518 -0.9405 24 6 11.3814 0.4057 1.3884 25 6 9.6802 1.6542 -0.0042 26 7 3.4765 -0.7622 0.0037 27 8 2.3085 -1.0749 0.0053 28 1 -0.3634 -1.0276 0.0046 29 1 -0.3632 0.5179 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0313 2.1263 -0.0004 32 1 6.0274 -0.1735 0.8916 33 1 6.0282 -0.1817 -0.8884 34 1 8.7905 -0.9429 1.0320 35 1 8.0773 -1.1288 -0.5995 36 1 11.4180 -1.8105 0.6763 37 1 11.9613 -6.0106 -0.8824 38 1 12.3564 2.1003 -0.5625 39 1 12.7807 0.4183 -0.9611 40 1 11.5857 1.2926 -1.9489 41 1 10.5757 0.0227 2.0147 42 1 12.1912 -0.3229 1.3522 43 1 11.7528 1.3415 1.8060 44 1 9.7171 2.2880 -0.8903 45 1 9.7318 2.2696 0.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995927828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:31 Heat of formation + Delta-G solvation = -6.731122 kcal Electronic energy + Delta-G solvation = -27504.973602 eV Core-core repulsion = 23526.454125 eV Total energy + Delta-G solvation = -3978.519477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.99737 -41.66462 -40.28386 -39.07331 -36.06767 -34.85897 -34.74451 -33.61147 -33.11214 -30.44367 -29.57891 -28.67949 -28.33876 -26.91056 -25.64304 -24.52394 -23.11561 -22.42829 -20.67669 -20.42326 -19.49748 -19.05166 -18.99456 -18.06955 -17.77689 -17.62821 -16.99447 -16.78778 -16.27264 -15.72102 -15.39501 -15.13641 -14.99069 -14.91172 -14.60476 -14.44252 -14.26711 -14.15680 -13.92158 -13.59368 -13.50845 -13.24253 -13.19595 -13.01736 -12.97341 -12.80099 -12.66096 -12.18756 -12.15894 -11.99445 -11.91729 -11.69884 -11.41575 -11.22433 -10.96061 -10.54448 -10.32574 -9.88972 -9.36015 -8.02883 -5.38228 0.42184 1.04973 1.14877 1.24623 1.37454 1.40750 1.47814 2.03261 2.29278 2.47453 3.02798 3.10686 3.25527 3.51817 3.57000 3.70144 3.77464 3.78586 3.89085 3.95181 3.95913 4.16543 4.25862 4.35330 4.36205 4.59585 4.69670 4.74763 4.76362 4.79328 4.81089 4.88806 4.90225 4.99000 5.05412 5.08461 5.18746 5.26744 5.34634 5.44082 5.74803 5.76442 6.19389 6.21719 6.79917 7.05840 7.19969 7.78955 7.98915 9.18081 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003045 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.350218 B = 9193.427448 C =10811.472459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 C -0.247 4.247 4 C 0.186 3.814 5 O -0.276 6.276 6 C 0.055 3.945 7 C 0.535 3.465 8 O -0.561 6.561 9 N -0.603 5.603 10 C 0.075 3.925 11 C 0.178 3.822 12 H 0.067 0.933 13 N -0.732 5.732 14 C -0.232 4.232 15 H 0.060 0.940 16 C -0.057 4.057 17 N -0.981 5.981 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.245 1.245 22 C -0.080 4.080 23 C -0.128 4.128 24 C -0.139 4.139 25 C 0.124 3.876 26 N -0.436 5.436 27 O 0.092 5.908 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.200 0.800 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.372 0.628 37 H 0.258 0.742 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 15.262 5.181 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 C -0.268 4.268 4 C -0.011 4.011 5 O -0.182 6.182 6 C -0.023 4.023 7 C 0.322 3.678 8 O -0.440 6.440 9 N -0.337 5.337 10 C -0.050 4.050 11 C 0.067 3.933 12 H 0.085 0.915 13 N -0.376 5.376 14 C -0.362 4.362 15 H 0.078 0.922 16 C -0.249 4.249 17 N -0.631 5.631 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.170 1.170 22 C -0.081 4.081 23 C -0.185 4.185 24 C -0.196 4.196 25 C 0.002 3.998 26 N -0.164 5.164 27 O 0.032 5.968 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.218 0.782 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.208 0.792 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.331 15.054 5.008 22.768 hybrid contribution 0.683 -0.227 0.617 0.949 sum -15.647 14.827 5.626 22.278 Atomic orbital electron populations 1.20692 0.79672 1.06417 1.06258 1.25242 0.98201 0.84083 0.98003 1.22158 0.86849 1.03267 1.14539 1.22521 0.88795 0.88583 1.01202 1.86193 1.10693 1.31734 1.89593 1.22396 0.81398 0.92920 1.05581 1.19683 0.83195 0.88128 0.76760 1.90703 1.85557 1.16363 1.51422 1.48278 1.04627 1.09178 1.71601 1.23382 1.00096 0.79404 1.02139 1.21488 0.88904 0.85713 0.97146 0.91454 1.42643 1.59837 1.08622 1.26477 1.19009 1.25299 0.88622 1.03313 0.92168 1.25434 1.02098 0.95408 1.01984 1.69874 1.48960 1.02722 1.41509 0.85592 0.78486 0.78500 0.80306 1.20548 1.22571 1.16960 1.21864 0.94796 0.93923 0.97518 1.21696 0.96914 1.01497 0.98426 1.21800 1.00930 1.02692 0.94202 1.22166 0.81090 0.93657 1.02898 1.74212 0.99183 1.14659 1.28361 1.84767 1.10036 1.33136 1.68882 0.88403 0.86754 0.86817 0.78247 0.87745 0.87997 0.90537 0.90848 0.79169 0.93345 0.90257 0.92785 0.92356 0.92742 0.92787 0.89873 0.90633 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 71.24 0.74 0.44 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.77 11.11 22.50 0.25 -4.52 16 4 C 0.19 5.14 8.01 85.79 0.69 5.83 16 5 O -0.28 -8.64 9.74 -71.23 -0.69 -9.33 16 6 C 0.06 1.61 5.14 71.24 0.37 1.98 16 7 C 0.53 17.14 7.93 87.66 0.69 17.83 16 8 O -0.56 -21.37 16.83 16.01 0.27 -21.10 16 9 N -0.60 -17.71 3.32 -811.36 -2.70 -20.41 16 10 C 0.08 2.34 6.08 86.93 0.53 2.87 16 11 C 0.18 6.06 2.97 46.46 0.14 6.20 16 12 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 13 N -0.73 -30.73 4.95 -316.02 -1.56 -32.30 16 14 C -0.23 -12.29 10.44 84.04 0.88 -11.41 16 15 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 16 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 17 N -0.98 -60.94 13.97 21.65 0.30 -60.64 16 18 Si 0.94 43.04 27.74 68.60 1.90 44.95 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 21 H -0.25 -9.81 6.52 99.48 0.65 -9.16 16 22 C -0.08 -2.12 0.85 -50.99 -0.04 -2.16 16 23 C -0.13 -3.07 8.48 71.98 0.61 -2.46 16 24 C -0.14 -3.47 7.55 71.98 0.54 -2.92 16 25 C 0.12 3.23 6.04 86.73 0.52 3.75 16 26 N -0.44 -12.42 11.54 -172.60 -1.99 -14.42 16 27 O 0.09 2.12 11.19 71.26 0.80 2.91 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.10 2.85 7.85 -2.39 -0.02 2.83 16 34 H 0.08 2.37 7.71 -2.39 -0.02 2.35 16 35 H 0.07 2.32 7.48 -2.39 -0.02 2.30 16 36 H 0.37 14.94 3.32 -92.71 -0.31 14.63 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 41 H 0.05 1.39 7.44 -2.39 -0.02 1.37 16 42 H 0.05 1.50 6.76 -2.39 -0.02 1.48 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.93 7.82 -2.38 -0.02 1.91 16 45 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 Total: -1.00 -74.09 371.79 3.53 -70.56 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.64 Total: 26.78 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 6.57 Total: 12.99 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.95 Total: -127.76 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: 0.37 Total: -27.52 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.90 Total: 44.95 kcal Total: -74.09 3.53 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995927828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.829 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds