Wall clock time and date at job start Tue Mar 31 2020 13:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47335 * 2 1 4 4 C 1.34774 * 120.00271 * 275.01766 * 3 2 1 5 5 O 1.21638 * 119.99980 * 185.16444 * 4 3 2 6 6 C 1.47266 * 119.99915 * 5.16635 * 4 3 2 7 7 C 1.35208 * 123.14109 * 185.69524 * 6 4 3 8 8 S 1.70938 * 108.82721 * 179.97438 * 7 6 4 9 9 C 1.70769 * 91.12960 * 0.02562 * 8 7 6 10 10 N 1.28644 * 110.56007 * 359.75942 * 9 8 7 11 11 C 1.46508 * 119.99708 * 95.01735 * 3 2 1 12 12 H 1.09001 * 109.51004 * 0.05777 * 11 3 2 13 13 C 1.52567 * 109.48790 * 240.00354 * 11 3 2 14 14 C 1.47090 * 114.20913 * 154.94821 * 13 11 3 15 15 C 1.54862 * 110.32784 * 62.87335 * 14 13 11 16 16 N 1.44578 * 109.60193 * 288.73779 * 15 14 13 17 17 C 1.36938 * 118.64526 * 270.70221 * 16 15 14 18 18 H 1.07998 * 119.99500 * 30.47208 * 17 16 15 19 19 C 1.38803 * 120.00090 * 210.47021 * 17 16 15 20 20 N 1.31621 * 120.00148 * 14.37209 * 19 17 16 21 21 Si 1.86798 * 120.00247 * 194.37518 * 19 17 16 22 22 H 1.48505 * 109.47356 * 94.97375 * 21 19 17 23 23 H 1.48493 * 109.47529 * 214.98000 * 21 19 17 24 24 H 1.48508 * 109.47062 * 334.97996 * 21 19 17 25 25 C 1.47611 * 122.71200 * 90.72135 * 16 15 14 26 26 C 1.51036 * 109.42640 * 120.25691 * 11 3 2 27 27 H 1.09005 * 109.47394 * 299.99808 * 1 2 3 28 28 H 1.08996 * 109.47544 * 59.99390 * 1 2 3 29 29 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47394 * 240.00192 * 2 1 3 31 31 H 1.09004 * 109.47314 * 120.00431 * 2 1 3 32 32 H 1.08002 * 125.58374 * 359.93089 * 7 6 4 33 33 H 1.08001 * 124.72260 * 180.02562 * 9 8 7 34 34 H 1.08993 * 108.51536 * 33.76649 * 13 11 3 35 35 H 1.09002 * 108.51044 * 276.11963 * 13 11 3 36 36 H 1.09001 * 109.33035 * 183.13767 * 14 13 11 37 37 H 1.09002 * 109.32599 * 302.61493 * 14 13 11 38 38 H 1.09003 * 109.44517 * 48.77739 * 15 14 13 39 39 H 1.08996 * 109.45300 * 168.69477 * 15 14 13 40 40 H 0.96998 * 120.00215 * 179.97438 * 20 19 17 41 41 H 1.08998 * 108.94465 * 78.55275 * 25 16 15 42 42 H 1.08997 * 108.94342 * 197.18485 * 25 16 15 43 43 H 1.08998 * 109.44363 * 91.77777 * 26 11 3 44 44 H 1.09001 * 109.41067 * 332.08854 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1467 2.0506 -1.1627 5 8 2.6399 3.1625 -1.1730 6 6 1.6899 1.4359 -2.4205 7 6 1.8881 1.9997 -3.6334 8 16 1.2154 0.9823 -4.8311 9 6 0.7081 -0.1359 -3.6444 10 7 1.0453 0.2672 -2.4702 11 6 2.3671 2.0348 1.2640 12 1 2.2005 1.3429 2.0896 13 6 1.4964 3.2731 1.4539 14 6 1.3160 3.6741 2.8575 15 6 2.6774 4.0629 3.4851 16 7 3.4809 2.8759 3.6741 17 6 3.3687 2.1880 4.8529 18 1 2.4314 2.1854 5.3893 19 6 4.4595 1.4942 5.3581 20 7 5.6631 1.7179 4.8746 21 14 4.2195 0.2431 6.7243 22 1 4.0790 -1.1127 6.1348 23 1 5.3948 0.2690 7.6315 24 1 2.9936 0.5781 7.4926 25 6 4.4177 2.3752 2.6491 26 6 3.8198 2.4468 1.2323 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3887 2.9392 -3.8155 33 1 0.1815 -1.0559 -3.8512 34 1 0.5155 3.0761 1.0215 35 1 1.9516 4.1026 0.9128 36 1 0.6400 4.5279 2.9048 37 1 0.8846 2.8442 3.4173 38 1 3.1991 4.7526 2.8216 39 1 2.5088 4.5442 4.4484 40 1 6.4255 1.2333 5.2280 41 1 5.3283 2.9733 2.6796 42 1 4.6689 1.3390 2.8754 43 1 3.8995 3.4671 0.8574 44 1 4.3719 1.7772 0.5727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997937043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:39 Heat of formation + Delta-G solvation = 51.729365 kcal Electronic energy + Delta-G solvation = -26592.963043 eV Core-core repulsion = 23059.731474 eV Total energy + Delta-G solvation = -3533.231569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83875 -39.07432 -37.19120 -35.55725 -33.30806 -31.61919 -30.80819 -30.63355 -29.31799 -26.59606 -25.62278 -24.04551 -23.39735 -23.16163 -21.68814 -20.17027 -19.44414 -19.26061 -17.75326 -16.73355 -16.48891 -15.92363 -15.37643 -15.29890 -14.84258 -14.26379 -14.01493 -13.89250 -13.75080 -13.57027 -13.45040 -13.07983 -12.87788 -12.38252 -12.25147 -12.10313 -11.82889 -11.74800 -11.28158 -11.05506 -10.94227 -10.80755 -10.75775 -10.31760 -10.19210 -10.06716 -9.90543 -9.86809 -9.67580 -9.64600 -9.47931 -9.35788 -9.20661 -8.36169 -8.24423 -6.53377 -5.71917 -3.19996 0.33641 1.02651 1.38018 1.91337 3.29025 3.39474 3.44106 3.47022 3.48330 3.94359 4.54282 4.71283 4.95210 5.10361 5.27468 5.38629 5.42452 5.52641 5.56903 5.65009 5.66804 5.74014 5.91864 6.08834 6.12526 6.17336 6.23008 6.47468 6.49701 6.53623 6.60226 6.67169 6.71547 6.81318 6.91889 7.02243 7.10424 7.19518 7.25258 7.49030 7.71640 7.79971 7.88909 8.41085 8.55923 9.31129 9.97545 10.45697 11.34898 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.003500 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.190111 B = 7999.144459 C = 8346.387754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.590 5.590 4 C 0.586 3.414 5 O -0.529 6.529 6 C 0.011 3.989 7 C -0.223 4.223 8 S 0.193 5.807 9 C -0.010 4.010 10 N -0.426 5.426 11 C 0.164 3.836 12 H 0.100 0.900 13 C -0.109 4.109 14 C -0.142 4.142 15 C 0.157 3.843 16 N -0.591 5.591 17 C -0.260 4.260 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.898 3.102 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.183 3.817 26 C -0.143 4.143 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.188 0.812 33 H 0.203 0.797 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -4.213 -19.789 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.320 5.320 4 C 0.370 3.630 5 O -0.406 6.406 6 C -0.123 4.123 7 C -0.365 4.365 8 S 0.447 5.553 9 C -0.310 4.310 10 N -0.141 5.141 11 C 0.063 3.937 12 H 0.118 0.882 13 C -0.147 4.147 14 C -0.183 4.183 15 C 0.029 3.971 16 N -0.313 5.313 17 C -0.390 4.390 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.057 3.943 26 C -0.183 4.183 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.205 0.795 33 H 0.220 0.780 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.639 -4.001 -20.309 23.274 hybrid contribution 0.115 -0.509 1.467 1.557 sum -10.524 -4.510 -18.842 22.048 Atomic orbital electron populations 1.22069 0.96009 1.01441 1.01533 1.21757 0.94743 0.81887 1.02946 1.48291 1.63326 1.14217 1.06209 1.17095 0.78994 0.84895 0.82032 1.90802 1.44484 1.19265 1.86045 1.20757 1.03395 0.92736 0.95416 1.26619 1.06873 1.06999 0.95968 1.82886 1.47935 1.12309 1.12149 1.28627 1.05663 1.05554 0.91111 1.67477 1.11304 1.11636 1.23728 1.20707 0.95160 0.94941 0.82902 0.88235 1.20634 0.98211 0.97977 0.97923 1.21432 1.00726 1.00303 0.95792 1.20704 0.89790 0.89090 0.97506 1.43648 1.47234 1.25891 1.14496 1.19193 0.94819 1.25858 0.99106 0.91883 1.25123 0.94929 1.01057 0.98034 1.70060 0.97707 1.42275 1.44500 0.86337 0.77149 0.81778 0.81878 1.21556 1.21831 1.20383 1.20934 0.90482 0.99728 0.83118 1.22421 0.94303 1.01213 1.00343 0.93377 0.92077 0.92382 0.89032 0.90936 0.79465 0.78038 0.94234 0.91835 0.93351 0.92348 0.94929 0.93702 0.93752 0.95427 0.91552 0.92026 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.54 37.15 0.35 -1.56 16 2 C 0.11 1.54 5.68 -4.05 -0.02 1.52 16 3 N -0.59 -9.85 2.27 -168.81 -0.38 -10.23 16 4 C 0.59 9.89 7.01 -12.59 -0.09 9.81 16 5 O -0.53 -10.29 13.94 5.24 0.07 -10.22 16 6 C 0.01 0.15 6.31 -84.52 -0.53 -0.38 16 7 C -0.22 -2.41 10.62 29.65 0.31 -2.09 16 8 S 0.19 1.32 22.96 -107.50 -2.47 -1.15 16 9 C -0.01 -0.08 12.17 51.43 0.63 0.55 16 10 N -0.43 -4.81 4.82 -12.36 -0.06 -4.87 16 11 C 0.16 3.13 2.18 -69.14 -0.15 2.98 16 12 H 0.10 2.08 7.07 -51.93 -0.37 1.71 16 13 C -0.11 -2.03 4.01 -29.79 -0.12 -2.15 16 14 C -0.14 -2.68 5.73 -28.59 -0.16 -2.84 16 15 C 0.16 3.43 5.65 -4.09 -0.02 3.40 16 16 N -0.59 -14.81 2.25 -172.09 -0.39 -15.20 16 17 C -0.26 -7.07 9.39 -15.06 -0.14 -7.21 16 18 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 19 C 0.01 0.21 4.88 -17.43 -0.09 0.13 16 20 N -0.90 -26.29 11.22 55.49 0.62 -25.67 16 21 Si 0.90 21.70 29.58 -169.99 -5.03 16.68 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.18 4.49 4.66 -2.94 -0.01 4.48 16 26 C -0.14 -3.00 4.22 -27.23 -0.11 -3.12 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.79 6.23 -51.93 -0.32 0.47 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.22 5.77 -51.93 -0.30 0.92 16 31 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 32 H 0.19 1.94 8.04 -52.49 -0.42 1.52 16 33 H 0.20 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.06 1.27 6.41 -51.93 -0.33 0.93 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.04 0.99 7.99 -51.93 -0.41 0.57 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.74 7.99 -51.93 -0.42 0.33 16 42 H 0.07 1.78 6.60 -51.93 -0.34 1.44 16 43 H 0.06 1.35 6.61 -51.93 -0.34 1.00 16 44 H 0.05 1.06 7.97 -51.93 -0.41 0.65 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -31.49 351.79 -9.07 -40.56 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.58 Total: 1.29 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.16 Total: 3.52 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.21 Total: -55.97 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.47 Total: -1.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.49 -9.07 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997937043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.288 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds