Wall clock time and date at job start Tue Mar 31 2020 13:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47335 * 2 1 4 4 C 1.34774 * 120.00271 * 275.01766 * 3 2 1 5 5 O 1.21638 * 119.99980 * 185.16444 * 4 3 2 6 6 C 1.47266 * 119.99915 * 5.16635 * 4 3 2 7 7 C 1.35208 * 123.14109 * 185.69524 * 6 4 3 8 8 S 1.70938 * 108.82721 * 179.97438 * 7 6 4 9 9 C 1.70769 * 91.12960 * 0.02562 * 8 7 6 10 10 N 1.28644 * 110.56007 * 359.75942 * 9 8 7 11 11 C 1.46508 * 119.99708 * 95.01735 * 3 2 1 12 12 H 1.09001 * 109.51004 * 0.05777 * 11 3 2 13 13 C 1.52567 * 109.48790 * 240.00354 * 11 3 2 14 14 C 1.47090 * 114.20913 * 154.94821 * 13 11 3 15 15 C 1.54862 * 110.32784 * 62.87335 * 14 13 11 16 16 N 1.44578 * 109.60193 * 288.73779 * 15 14 13 17 17 C 1.36938 * 118.64526 * 270.70221 * 16 15 14 18 18 H 1.07998 * 119.99500 * 30.47208 * 17 16 15 19 19 C 1.38803 * 120.00090 * 210.47021 * 17 16 15 20 20 N 1.31621 * 120.00148 * 14.37209 * 19 17 16 21 21 Si 1.86798 * 120.00247 * 194.37518 * 19 17 16 22 22 H 1.48505 * 109.47356 * 94.97375 * 21 19 17 23 23 H 1.48493 * 109.47529 * 214.98000 * 21 19 17 24 24 H 1.48508 * 109.47062 * 334.97996 * 21 19 17 25 25 C 1.47611 * 122.71200 * 90.72135 * 16 15 14 26 26 C 1.51036 * 109.42640 * 120.25691 * 11 3 2 27 27 H 1.09005 * 109.47394 * 299.99808 * 1 2 3 28 28 H 1.08996 * 109.47544 * 59.99390 * 1 2 3 29 29 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47394 * 240.00192 * 2 1 3 31 31 H 1.09004 * 109.47314 * 120.00431 * 2 1 3 32 32 H 1.08002 * 125.58374 * 359.93089 * 7 6 4 33 33 H 1.08001 * 124.72260 * 180.02562 * 9 8 7 34 34 H 1.08993 * 108.51536 * 33.76649 * 13 11 3 35 35 H 1.09002 * 108.51044 * 276.11963 * 13 11 3 36 36 H 1.09001 * 109.33035 * 183.13767 * 14 13 11 37 37 H 1.09002 * 109.32599 * 302.61493 * 14 13 11 38 38 H 1.09003 * 109.44517 * 48.77739 * 15 14 13 39 39 H 1.08996 * 109.45300 * 168.69477 * 15 14 13 40 40 H 0.96998 * 120.00215 * 179.97438 * 20 19 17 41 41 H 1.08998 * 108.94465 * 78.55275 * 25 16 15 42 42 H 1.08997 * 108.94342 * 197.18485 * 25 16 15 43 43 H 1.08998 * 109.44363 * 91.77777 * 26 11 3 44 44 H 1.09001 * 109.41067 * 332.08854 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1467 2.0506 -1.1627 5 8 2.6399 3.1625 -1.1730 6 6 1.6899 1.4359 -2.4205 7 6 1.8881 1.9997 -3.6334 8 16 1.2154 0.9823 -4.8311 9 6 0.7081 -0.1359 -3.6444 10 7 1.0453 0.2672 -2.4702 11 6 2.3671 2.0348 1.2640 12 1 2.2005 1.3429 2.0896 13 6 1.4964 3.2731 1.4539 14 6 1.3160 3.6741 2.8575 15 6 2.6774 4.0629 3.4851 16 7 3.4809 2.8759 3.6741 17 6 3.3687 2.1880 4.8529 18 1 2.4314 2.1854 5.3893 19 6 4.4595 1.4942 5.3581 20 7 5.6631 1.7179 4.8746 21 14 4.2195 0.2431 6.7243 22 1 4.0790 -1.1127 6.1348 23 1 5.3948 0.2690 7.6315 24 1 2.9936 0.5781 7.4926 25 6 4.4177 2.3752 2.6491 26 6 3.8198 2.4468 1.2323 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3887 2.9392 -3.8155 33 1 0.1815 -1.0559 -3.8512 34 1 0.5155 3.0761 1.0215 35 1 1.9516 4.1026 0.9128 36 1 0.6400 4.5279 2.9048 37 1 0.8846 2.8442 3.4173 38 1 3.1991 4.7526 2.8216 39 1 2.5088 4.5442 4.4484 40 1 6.4255 1.2333 5.2280 41 1 5.3283 2.9733 2.6796 42 1 4.6689 1.3390 2.8754 43 1 3.8995 3.4671 0.8574 44 1 4.3719 1.7772 0.5727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997937043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:38 Heat of formation + Delta-G solvation = 34.097361 kcal Electronic energy + Delta-G solvation = -26593.727624 eV Core-core repulsion = 23059.731474 eV Total energy + Delta-G solvation = -3533.996150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93266 -40.24082 -38.75744 -36.97769 -35.09332 -33.25147 -32.61467 -31.64678 -30.59949 -28.06128 -27.04973 -25.49496 -25.06289 -24.54379 -22.77588 -21.63643 -21.19982 -20.22110 -18.92637 -18.46389 -17.82765 -17.10305 -16.83072 -16.39946 -16.37749 -16.00230 -15.58387 -15.23315 -14.94552 -14.82076 -14.64383 -14.50787 -14.18543 -13.96747 -13.78485 -13.43354 -13.17505 -13.03967 -12.91254 -12.73876 -12.64678 -12.48876 -12.08074 -12.03939 -12.01148 -11.79611 -11.56389 -11.36553 -11.32370 -10.89531 -10.60509 -10.50168 -10.44970 -9.94151 -9.57937 -8.60905 -7.83770 -5.35691 -0.41421 0.38210 0.70384 1.02289 1.47590 1.48407 1.58121 2.05805 2.32779 2.52723 3.13475 3.29443 3.63084 3.72294 3.96987 4.02637 4.14805 4.19870 4.36549 4.38497 4.42271 4.46907 4.56779 4.67333 4.68870 4.73419 4.83652 4.89519 4.99508 5.07646 5.12651 5.15737 5.17735 5.21465 5.31450 5.45164 5.49884 5.54434 5.65741 5.72070 5.74459 6.39803 6.43921 6.56069 7.14997 7.19389 7.93051 8.37415 9.21503 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.003500 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.190111 B = 7999.144459 C = 8346.387754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.109 3.891 3 N -0.594 5.594 4 C 0.579 3.421 5 O -0.567 6.567 6 C -0.017 4.017 7 C -0.241 4.241 8 S 0.288 5.712 9 C -0.008 4.008 10 N -0.452 5.452 11 C 0.174 3.826 12 H 0.082 0.918 13 C -0.099 4.099 14 C -0.127 4.127 15 C 0.153 3.847 16 N -0.602 5.602 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.200 3.800 26 C -0.122 4.122 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.183 0.817 33 H 0.242 0.758 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.248 0.752 41 H -0.007 1.007 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 -5.746 -21.797 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.013 4.013 3 N -0.324 5.324 4 C 0.366 3.634 5 O -0.447 6.447 6 C -0.152 4.152 7 C -0.384 4.384 8 S 0.544 5.456 9 C -0.307 4.307 10 N -0.167 5.167 11 C 0.071 3.929 12 H 0.100 0.900 13 C -0.137 4.137 14 C -0.167 4.167 15 C 0.026 3.974 16 N -0.325 5.325 17 C -0.396 4.396 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.191 1.191 25 C 0.074 3.926 26 C -0.162 4.162 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.201 0.799 33 H 0.258 0.742 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.011 0.989 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.262 -5.545 -22.348 26.572 hybrid contribution 0.901 -0.013 1.912 2.114 sum -12.360 -5.558 -20.436 24.521 Atomic orbital electron populations 1.21957 0.94449 1.02661 1.00746 1.21911 0.95956 0.80365 1.03054 1.48300 1.63539 1.15167 1.05407 1.17644 0.78143 0.84547 0.83109 1.90764 1.46229 1.20918 1.86816 1.20301 1.06148 0.94520 0.94230 1.26848 1.06779 1.07706 0.97095 1.82605 1.44900 1.09281 1.08846 1.29293 1.04217 1.06612 0.90541 1.67388 1.12443 1.11128 1.25784 1.20356 0.93670 0.94928 0.83941 0.90030 1.20514 0.98466 0.97141 0.97584 1.21261 0.99003 1.01124 0.95315 1.20850 0.90866 0.88022 0.97671 1.43820 1.47537 1.26906 1.14209 1.19494 0.94860 1.25715 0.99508 0.91509 1.25882 0.94611 1.02993 1.00578 1.70227 0.98398 1.43411 1.46116 0.85293 0.77081 0.79301 0.79031 1.21192 1.22373 1.19078 1.20596 0.89713 0.97178 0.85098 1.22142 0.95873 1.00607 0.97551 0.94802 0.92083 0.90105 0.87897 0.91796 0.79933 0.74197 0.93019 0.93084 0.90493 0.92931 0.95134 0.93888 0.94246 0.98873 0.94302 0.92984 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.54 71.98 0.69 -2.60 16 2 C 0.11 3.01 5.68 86.38 0.49 3.50 16 3 N -0.59 -20.06 2.27 -806.22 -1.83 -21.89 16 4 C 0.58 19.78 7.01 86.62 0.61 20.39 16 5 O -0.57 -22.77 13.94 -4.15 -0.06 -22.83 16 6 C -0.02 -0.45 6.31 40.56 0.26 -0.19 16 7 C -0.24 -4.86 10.62 67.12 0.71 -4.15 16 8 S 0.29 2.85 22.96 -56.49 -1.30 1.55 16 9 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 10 N -0.45 -9.15 4.82 -193.03 -0.93 -10.08 16 11 C 0.17 6.80 2.18 44.21 0.10 6.89 16 12 H 0.08 3.50 7.07 -2.39 -0.02 3.48 16 13 C -0.10 -3.68 4.01 28.61 0.11 -3.56 16 14 C -0.13 -4.70 5.73 29.39 0.17 -4.53 16 15 C 0.15 6.75 5.65 87.37 0.49 7.25 16 16 N -0.60 -31.15 2.25 -698.39 -1.57 -32.72 16 17 C -0.27 -14.69 9.39 84.03 0.79 -13.90 16 18 H 0.07 3.60 7.87 -2.91 -0.02 3.57 16 19 C -0.04 -2.54 4.88 84.86 0.41 -2.13 16 20 N -0.94 -56.56 11.22 21.65 0.24 -56.31 16 21 Si 0.96 45.23 29.58 68.60 2.03 47.26 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.20 10.37 4.66 86.48 0.40 10.77 16 26 C -0.12 -5.37 4.22 30.27 0.13 -5.24 16 27 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.06 1.46 6.23 -2.39 -0.01 1.44 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 2.64 5.77 -2.38 -0.01 2.62 16 31 H 0.06 1.84 7.82 -2.38 -0.02 1.82 16 32 H 0.18 3.71 8.04 -2.91 -0.02 3.69 16 33 H 0.24 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.05 2.05 6.41 -2.39 -0.02 2.03 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 39 H 0.04 1.90 7.99 -2.39 -0.02 1.88 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H -0.01 -0.39 7.99 -2.39 -0.02 -0.41 16 42 H 0.04 2.20 6.60 -2.39 -0.02 2.19 16 43 H 0.05 2.39 6.61 -2.39 -0.02 2.37 16 44 H 0.05 2.15 7.97 -2.39 -0.02 2.13 16 Total: -1.00 -71.38 351.79 4.53 -66.85 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.00 Total: 14.16 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.95 Total: 14.00 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -4.09 Total: -121.00 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.30 Total: 1.55 kcal Total: -71.38 4.53 -66.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997937043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.948 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds