Wall clock time and date at job start Tue Mar 31 2020 13:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47001 * 2 1 4 4 C 1.34786 * 119.99981 * 277.03800 * 3 2 1 5 5 O 1.21632 * 119.99869 * 176.02288 * 4 3 2 6 6 C 1.47269 * 119.99775 * 356.01741 * 4 3 2 7 7 C 1.35205 * 123.13727 * 186.12843 * 6 4 3 8 8 S 1.70941 * 108.82240 * 179.87295 * 7 6 4 9 9 C 1.70763 * 91.13192 * 0.33024 * 8 7 6 10 10 N 1.28651 * 110.55773 * 359.80463 * 9 8 7 11 11 C 1.46500 * 120.00274 * 97.03132 * 3 2 1 12 12 H 1.09002 * 109.20074 * 0.64508 * 11 3 2 13 13 C 1.50130 * 109.20548 * 120.00111 * 11 3 2 14 14 C 1.52524 * 105.40985 * 217.98655 * 13 11 3 15 15 C 1.46244 * 114.27965 * 270.58984 * 14 13 11 16 16 N 1.50175 * 107.52892 * 58.41112 * 15 14 13 17 17 C 1.36938 * 120.53468 * 109.56566 * 16 15 14 18 18 H 1.07995 * 120.00040 * 156.29213 * 17 16 15 19 19 C 1.38810 * 120.00045 * 336.29587 * 17 16 15 20 20 N 1.31618 * 119.99966 * 344.23995 * 19 17 16 21 21 Si 1.86799 * 119.99986 * 164.24103 * 19 17 16 22 22 H 1.48499 * 109.47108 * 269.99707 * 21 19 17 23 23 H 1.48499 * 109.47027 * 29.99903 * 21 19 17 24 24 H 1.48499 * 109.47218 * 150.00148 * 21 19 17 25 25 C 1.43433 * 118.92403 * 289.84400 * 16 15 14 26 26 C 1.54406 * 116.39107 * 91.45572 * 25 16 15 27 27 H 1.08999 * 109.46990 * 299.99815 * 1 2 3 28 28 H 1.08996 * 109.47489 * 59.99946 * 1 2 3 29 29 H 1.08995 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46990 * 240.00185 * 2 1 3 31 31 H 1.08996 * 109.47489 * 120.00053 * 2 1 3 32 32 H 1.07997 * 125.58746 * 0.02562 * 7 6 4 33 33 H 1.08003 * 124.72262 * 179.76807 * 9 8 7 34 34 H 1.08994 * 110.24698 * 99.01694 * 13 11 3 35 35 H 1.08997 * 110.24765 * 336.95793 * 13 11 3 36 36 H 1.09009 * 108.52212 * 149.35744 * 14 13 11 37 37 H 1.08998 * 108.40833 * 31.74729 * 14 13 11 38 38 H 1.09002 * 109.84817 * 298.91090 * 15 14 13 39 39 H 1.08997 * 109.90507 * 177.94783 * 15 14 13 40 40 H 0.97004 * 119.99890 * 180.02562 * 20 19 17 41 41 H 1.09006 * 108.15398 * 213.02842 * 25 16 15 42 42 H 1.08998 * 108.16218 * 329.59622 * 25 16 15 43 43 H 1.08992 * 109.44375 * 198.43191 * 26 25 16 44 44 H 1.09006 * 109.23566 * 78.73444 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1082 2.0643 -1.1585 5 8 2.4443 3.2332 -1.1508 6 6 1.7993 1.3952 -2.4336 7 6 1.9829 1.9802 -3.6386 8 16 1.5125 0.8827 -4.8618 9 6 1.0890 -0.2894 -3.6944 10 7 1.3064 0.1562 -2.5073 11 6 2.4090 2.0201 1.2591 12 1 2.2777 1.3112 2.0767 13 6 3.8532 2.4226 1.1815 14 6 4.4244 2.1527 2.5698 15 6 4.3125 3.2792 3.4955 16 7 2.8557 3.6236 3.6150 17 6 2.1724 3.3650 4.7731 18 1 1.2817 3.9273 5.0117 19 6 2.6245 2.3802 5.6406 20 7 3.5049 1.4932 5.2278 21 14 1.9833 2.3137 7.3939 22 1 2.8540 3.1371 8.2709 23 1 0.5968 2.8441 7.4343 24 1 1.9894 0.9072 7.8702 25 6 2.1902 4.2222 2.4942 26 6 1.5064 3.2540 1.5048 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3664 2.9765 -3.8017 33 1 0.6931 -1.2684 -3.9211 34 1 3.9371 3.4818 0.9385 35 1 4.3730 1.8208 0.4361 36 1 5.4780 1.8930 2.4662 37 1 3.8990 1.2991 2.9981 38 1 4.8642 4.1347 3.1057 39 1 4.7075 2.9980 4.4717 40 1 3.8206 0.8047 5.8339 41 1 1.4298 4.9040 2.8752 42 1 2.9208 4.8120 1.9406 43 1 1.3297 3.7665 0.5592 44 1 0.5538 2.9275 1.9222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997937045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:42 Heat of formation + Delta-G solvation = 61.468067 kcal Electronic energy + Delta-G solvation = -26731.285385 eV Core-core repulsion = 23198.476118 eV Total energy + Delta-G solvation = -3532.809267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77450 -39.01289 -37.19860 -35.52466 -32.97808 -31.48220 -30.82857 -30.65649 -29.10826 -26.54230 -25.67440 -24.01305 -23.57150 -22.92678 -21.54181 -19.89717 -19.53497 -19.18307 -17.63830 -16.77273 -16.34894 -15.90442 -15.37180 -15.11700 -14.89563 -14.19435 -13.79605 -13.71229 -13.68156 -13.59746 -13.41690 -13.07122 -12.58266 -12.28341 -12.10586 -12.10164 -11.84034 -11.52240 -11.23538 -11.15617 -11.00786 -10.80168 -10.49891 -10.34453 -9.99187 -9.92007 -9.84844 -9.80071 -9.55534 -9.40181 -9.28808 -9.16225 -9.13268 -8.38897 -8.09239 -6.62309 -5.71811 -3.13466 0.37331 1.05951 1.41129 1.96235 3.39780 3.41607 3.48478 3.49450 3.50640 3.98917 4.55564 4.77234 4.99610 5.14394 5.36144 5.42527 5.52243 5.57089 5.63327 5.75202 5.78960 5.92231 6.04741 6.17974 6.22856 6.29341 6.47689 6.53113 6.56146 6.60301 6.74037 6.80270 6.92734 7.01791 7.09561 7.13848 7.24314 7.34273 7.40143 7.72552 7.80786 7.86299 8.04613 8.48889 8.50988 9.26955 9.93936 10.47972 11.34724 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003476 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.251048 B = 8054.229643 C = 8471.164509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.098 3.902 3 N -0.588 5.588 4 C 0.584 3.416 5 O -0.531 6.531 6 C 0.014 3.986 7 C -0.224 4.224 8 S 0.192 5.808 9 C -0.010 4.010 10 N -0.428 5.428 11 C 0.164 3.836 12 H 0.098 0.902 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.164 3.836 16 N -0.591 5.591 17 C -0.242 4.242 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.293 1.293 25 C 0.163 3.837 26 C -0.151 4.151 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.188 0.812 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.097 0.903 38 H 0.004 0.996 39 H 0.094 0.906 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 -5.450 -20.078 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 N -0.319 5.319 4 C 0.368 3.632 5 O -0.408 6.408 6 C -0.121 4.121 7 C -0.366 4.366 8 S 0.446 5.554 9 C -0.309 4.309 10 N -0.143 5.143 11 C 0.063 3.937 12 H 0.116 0.884 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.041 3.959 16 N -0.312 5.312 17 C -0.372 4.372 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.219 1.219 25 C 0.034 3.966 26 C -0.193 4.193 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.220 0.780 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.022 0.978 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.355 -5.301 -20.501 21.439 hybrid contribution -0.340 -0.021 1.681 1.715 sum -3.695 -5.322 -18.820 19.904 Atomic orbital electron populations 1.22008 0.96221 1.01324 1.01441 1.21995 0.94602 0.82313 1.03649 1.48400 1.62522 1.14091 1.06845 1.17089 0.78425 0.85626 0.82083 1.90784 1.48372 1.15214 1.86452 1.20824 1.04799 0.90857 0.95593 1.26602 1.07271 1.06898 0.95830 1.82861 1.55285 1.05499 1.11764 1.28669 1.05448 1.05621 0.91115 1.67408 1.12891 1.11012 1.22950 1.21433 0.94320 0.95509 0.82424 0.88393 1.21371 0.94595 1.01468 0.97980 1.20940 0.98581 1.03591 0.93454 1.20206 0.83564 0.92281 0.99842 1.44294 1.05127 1.72172 1.09612 1.19270 1.08900 1.13067 0.95963 0.91585 1.24908 1.00035 0.95643 0.99185 1.69943 1.34859 1.16334 1.33960 0.86293 0.78468 0.76614 0.85402 1.21676 1.20709 1.21942 1.20214 0.94847 0.93185 0.88354 1.23175 0.98387 0.97483 1.00262 0.93034 0.92922 0.92330 0.87721 0.91105 0.79474 0.78047 0.91415 0.93656 0.95449 0.88490 0.97821 0.88795 0.93855 0.95128 0.95108 0.91567 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.65 37.16 0.36 -1.74 16 2 C 0.10 1.46 5.71 -4.04 -0.02 1.44 16 3 N -0.59 -10.34 2.31 -167.94 -0.39 -10.73 16 4 C 0.58 10.22 6.81 -12.59 -0.09 10.14 16 5 O -0.53 -10.60 13.86 5.25 0.07 -10.52 16 6 C 0.01 0.19 6.34 -84.53 -0.54 -0.35 16 7 C -0.22 -2.50 10.62 29.65 0.31 -2.19 16 8 S 0.19 1.37 22.96 -107.50 -2.47 -1.10 16 9 C -0.01 -0.08 12.17 51.43 0.63 0.55 16 10 N -0.43 -5.05 5.31 -12.36 -0.07 -5.11 16 11 C 0.16 3.33 2.31 -68.39 -0.16 3.17 16 12 H 0.10 2.25 6.36 -51.93 -0.33 1.92 16 13 C -0.12 -2.39 4.26 -28.40 -0.12 -2.51 16 14 C -0.13 -2.83 5.01 -30.19 -0.15 -2.98 16 15 C 0.16 3.98 5.24 -5.20 -0.03 3.95 16 16 N -0.59 -14.90 2.61 -175.39 -0.46 -15.36 16 17 C -0.24 -6.60 9.65 -15.06 -0.15 -6.74 16 18 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 19 C 0.00 -0.01 5.01 -17.43 -0.09 -0.10 16 20 N -0.90 -24.85 9.24 55.49 0.51 -24.34 16 21 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.16 3.71 5.13 -4.93 -0.03 3.68 16 26 C -0.15 -3.20 5.77 -25.03 -0.14 -3.34 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 1.46 5.26 -51.93 -0.27 1.18 16 31 H 0.07 1.09 7.76 -51.93 -0.40 0.68 16 32 H 0.19 1.99 8.04 -52.49 -0.42 1.57 16 33 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.07 1.47 6.05 -51.93 -0.31 1.16 16 35 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 36 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.10 2.42 5.34 -51.93 -0.28 2.14 16 38 H 0.00 0.08 8.13 -51.93 -0.42 -0.34 16 39 H 0.09 2.50 5.95 -51.93 -0.31 2.19 16 40 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.03 0.69 7.99 -51.93 -0.42 0.27 16 42 H 0.03 0.68 6.89 -51.93 -0.36 0.33 16 43 H 0.07 1.40 5.87 -51.93 -0.30 1.10 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -30.18 346.08 -9.07 -39.25 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.26 Total: 3.11 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.20 Total: 2.98 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.40 Total: -55.54 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.47 Total: -1.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.18 -9.07 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997937045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.719 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds