Wall clock time and date at job start Tue Mar 31 2020 13:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47001 * 2 1 4 4 C 1.34786 * 119.99981 * 277.03800 * 3 2 1 5 5 O 1.21632 * 119.99869 * 176.02288 * 4 3 2 6 6 C 1.47269 * 119.99775 * 356.01741 * 4 3 2 7 7 C 1.35205 * 123.13727 * 186.12843 * 6 4 3 8 8 S 1.70941 * 108.82240 * 179.87295 * 7 6 4 9 9 C 1.70763 * 91.13192 * 0.33024 * 8 7 6 10 10 N 1.28651 * 110.55773 * 359.80463 * 9 8 7 11 11 C 1.46500 * 120.00274 * 97.03132 * 3 2 1 12 12 H 1.09002 * 109.20074 * 0.64508 * 11 3 2 13 13 C 1.50130 * 109.20548 * 120.00111 * 11 3 2 14 14 C 1.52524 * 105.40985 * 217.98655 * 13 11 3 15 15 C 1.46244 * 114.27965 * 270.58984 * 14 13 11 16 16 N 1.50175 * 107.52892 * 58.41112 * 15 14 13 17 17 C 1.36938 * 120.53468 * 109.56566 * 16 15 14 18 18 H 1.07995 * 120.00040 * 156.29213 * 17 16 15 19 19 C 1.38810 * 120.00045 * 336.29587 * 17 16 15 20 20 N 1.31618 * 119.99966 * 344.23995 * 19 17 16 21 21 Si 1.86799 * 119.99986 * 164.24103 * 19 17 16 22 22 H 1.48499 * 109.47108 * 269.99707 * 21 19 17 23 23 H 1.48499 * 109.47027 * 29.99903 * 21 19 17 24 24 H 1.48499 * 109.47218 * 150.00148 * 21 19 17 25 25 C 1.43433 * 118.92403 * 289.84400 * 16 15 14 26 26 C 1.54406 * 116.39107 * 91.45572 * 25 16 15 27 27 H 1.08999 * 109.46990 * 299.99815 * 1 2 3 28 28 H 1.08996 * 109.47489 * 59.99946 * 1 2 3 29 29 H 1.08995 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46990 * 240.00185 * 2 1 3 31 31 H 1.08996 * 109.47489 * 120.00053 * 2 1 3 32 32 H 1.07997 * 125.58746 * 0.02562 * 7 6 4 33 33 H 1.08003 * 124.72262 * 179.76807 * 9 8 7 34 34 H 1.08994 * 110.24698 * 99.01694 * 13 11 3 35 35 H 1.08997 * 110.24765 * 336.95793 * 13 11 3 36 36 H 1.09009 * 108.52212 * 149.35744 * 14 13 11 37 37 H 1.08998 * 108.40833 * 31.74729 * 14 13 11 38 38 H 1.09002 * 109.84817 * 298.91090 * 15 14 13 39 39 H 1.08997 * 109.90507 * 177.94783 * 15 14 13 40 40 H 0.97004 * 119.99890 * 180.02562 * 20 19 17 41 41 H 1.09006 * 108.15398 * 213.02842 * 25 16 15 42 42 H 1.08998 * 108.16218 * 329.59622 * 25 16 15 43 43 H 1.08992 * 109.44375 * 198.43191 * 26 25 16 44 44 H 1.09006 * 109.23566 * 78.73444 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1082 2.0643 -1.1585 5 8 2.4443 3.2332 -1.1508 6 6 1.7993 1.3952 -2.4336 7 6 1.9829 1.9802 -3.6386 8 16 1.5125 0.8827 -4.8618 9 6 1.0890 -0.2894 -3.6944 10 7 1.3064 0.1562 -2.5073 11 6 2.4090 2.0201 1.2591 12 1 2.2777 1.3112 2.0767 13 6 3.8532 2.4226 1.1815 14 6 4.4244 2.1527 2.5698 15 6 4.3125 3.2792 3.4955 16 7 2.8557 3.6236 3.6150 17 6 2.1724 3.3650 4.7731 18 1 1.2817 3.9273 5.0117 19 6 2.6245 2.3802 5.6406 20 7 3.5049 1.4932 5.2278 21 14 1.9833 2.3137 7.3939 22 1 2.8540 3.1371 8.2709 23 1 0.5968 2.8441 7.4343 24 1 1.9894 0.9072 7.8702 25 6 2.1902 4.2222 2.4942 26 6 1.5064 3.2540 1.5048 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3664 2.9765 -3.8017 33 1 0.6931 -1.2684 -3.9211 34 1 3.9371 3.4818 0.9385 35 1 4.3730 1.8208 0.4361 36 1 5.4780 1.8930 2.4662 37 1 3.8990 1.2991 2.9981 38 1 4.8642 4.1347 3.1057 39 1 4.7075 2.9980 4.4717 40 1 3.8206 0.8047 5.8339 41 1 1.4298 4.9040 2.8752 42 1 2.9208 4.8120 1.9406 43 1 1.3297 3.7665 0.5592 44 1 0.5538 2.9275 1.9222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997937045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:41 Heat of formation + Delta-G solvation = 44.964726 kcal Electronic energy + Delta-G solvation = -26732.001023 eV Core-core repulsion = 23198.476118 eV Total energy + Delta-G solvation = -3533.524906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91573 -40.25000 -38.81875 -36.98035 -34.77708 -33.37326 -32.50190 -31.62731 -30.51417 -28.11905 -27.01653 -25.74341 -24.91632 -24.46155 -22.70294 -21.71959 -21.05553 -20.21313 -18.90630 -18.53640 -17.61550 -17.05324 -16.95194 -16.53066 -16.38561 -15.73969 -15.52979 -15.08122 -14.96601 -14.92395 -14.74889 -14.19776 -14.12042 -13.95899 -13.71045 -13.51819 -13.19188 -13.08995 -12.91015 -12.76831 -12.64904 -12.37235 -12.22627 -12.03060 -11.87462 -11.59153 -11.47264 -11.30423 -11.20880 -10.77719 -10.65444 -10.42703 -10.37829 -9.92626 -9.50929 -8.64881 -7.79570 -5.24333 -0.40441 0.38957 0.70259 1.03230 1.48913 1.51083 1.58363 2.10932 2.34220 2.55107 3.14804 3.33078 3.59059 3.79472 4.01553 4.09861 4.18244 4.20634 4.38319 4.40882 4.46429 4.51138 4.63401 4.65970 4.72369 4.74324 4.84606 4.93896 4.97314 5.06983 5.12418 5.14746 5.22374 5.29113 5.37123 5.44791 5.51543 5.67281 5.71368 5.81206 6.11972 6.41514 6.44036 6.58196 7.17097 7.19380 7.90230 8.42433 9.24416 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003476 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.251048 B = 8054.229643 C = 8471.164509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 N -0.594 5.594 4 C 0.578 3.422 5 O -0.567 6.567 6 C -0.016 4.016 7 C -0.241 4.241 8 S 0.291 5.709 9 C -0.008 4.008 10 N -0.456 5.456 11 C 0.176 3.824 12 H 0.069 0.931 13 C -0.099 4.099 14 C -0.115 4.115 15 C 0.168 3.832 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.060 0.940 19 C -0.039 4.039 20 N -0.918 5.918 21 Si 0.962 3.038 22 H -0.289 1.289 23 H -0.277 1.277 24 H -0.294 1.294 25 C 0.163 3.837 26 C -0.138 4.138 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.185 0.815 33 H 0.242 0.758 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.015 0.985 39 H 0.069 0.931 40 H 0.249 0.751 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -6.838 -22.598 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.365 3.635 5 O -0.447 6.447 6 C -0.151 4.151 7 C -0.384 4.384 8 S 0.547 5.453 9 C -0.306 4.306 10 N -0.172 5.172 11 C 0.074 3.926 12 H 0.087 0.913 13 C -0.137 4.137 14 C -0.154 4.154 15 C 0.045 3.955 16 N -0.323 5.323 17 C -0.392 4.392 18 H 0.078 0.922 19 C -0.235 4.235 20 N -0.564 5.564 21 Si 0.791 3.209 22 H -0.216 1.216 23 H -0.203 1.203 24 H -0.220 1.220 25 C 0.035 3.965 26 C -0.180 4.180 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.202 0.798 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.068 -6.708 -23.061 24.359 hybrid contribution -0.140 0.393 2.279 2.316 sum -4.208 -6.315 -20.782 22.124 Atomic orbital electron populations 1.21902 0.95263 1.02524 1.00135 1.22158 0.95327 0.80945 1.04005 1.48380 1.62909 1.15017 1.06069 1.17629 0.77374 0.85381 0.83151 1.90741 1.50002 1.16743 1.87212 1.20327 1.08051 0.92419 0.94292 1.26842 1.06681 1.07891 0.96983 1.82573 1.52228 1.02256 1.08243 1.29321 1.03601 1.07147 0.90537 1.67274 1.14386 1.10339 1.25159 1.20980 0.93993 0.94383 0.83266 0.91316 1.21183 0.94790 1.00835 0.96921 1.20743 0.99029 1.01801 0.93847 1.20123 0.83215 0.93211 0.98969 1.44398 1.05552 1.72452 1.09920 1.19433 1.09209 1.13393 0.97148 0.92199 1.25535 1.00490 0.95370 1.02135 1.70094 1.35354 1.16359 1.34568 0.85359 0.78007 0.76225 0.81297 1.21598 1.20254 1.22027 1.20239 0.94855 0.93357 0.88086 1.22988 0.97815 0.97569 0.99584 0.95446 0.92952 0.89819 0.85881 0.92148 0.79781 0.74193 0.92364 0.92868 0.94254 0.91021 0.96693 0.91282 0.94202 0.95345 0.94691 0.91456 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.65 71.98 0.69 -3.12 16 2 C 0.10 2.92 5.71 86.38 0.49 3.42 16 3 N -0.59 -21.29 2.31 -803.48 -1.86 -23.15 16 4 C 0.58 20.42 6.81 86.62 0.59 21.01 16 5 O -0.57 -23.11 13.86 -4.13 -0.06 -23.17 16 6 C -0.02 -0.43 6.34 40.56 0.26 -0.18 16 7 C -0.24 -4.95 10.62 67.12 0.71 -4.23 16 8 S 0.29 2.98 22.96 -56.49 -1.30 1.68 16 9 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 10 N -0.46 -9.71 5.31 -193.03 -1.03 -10.74 16 11 C 0.18 7.41 2.31 44.69 0.10 7.51 16 12 H 0.07 3.31 6.36 -2.39 -0.02 3.29 16 13 C -0.10 -4.16 4.26 29.51 0.13 -4.04 16 14 C -0.12 -5.26 5.01 28.36 0.14 -5.12 16 15 C 0.17 8.32 5.24 83.58 0.44 8.76 16 16 N -0.60 -31.15 2.61 -708.82 -1.85 -33.00 16 17 C -0.26 -14.59 9.65 84.03 0.81 -13.78 16 18 H 0.06 3.35 7.86 -2.91 -0.02 3.32 16 19 C -0.04 -2.17 5.01 84.86 0.43 -1.74 16 20 N -0.92 -51.47 9.24 21.65 0.20 -51.27 16 21 Si 0.96 45.04 29.58 68.60 2.03 47.07 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 C 0.16 7.61 5.13 87.42 0.45 8.06 16 26 C -0.14 -6.04 5.77 31.70 0.18 -5.85 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 1.43 6.91 -2.39 -0.02 1.41 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.12 3.28 5.26 -2.39 -0.01 3.27 16 31 H 0.06 1.89 7.76 -2.39 -0.02 1.88 16 32 H 0.18 3.76 8.04 -2.91 -0.02 3.74 16 33 H 0.24 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.06 2.57 6.05 -2.39 -0.01 2.56 16 35 H 0.05 2.13 7.86 -2.39 -0.02 2.11 16 36 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.07 3.70 5.34 -2.39 -0.01 3.68 16 38 H 0.01 0.70 8.13 -2.39 -0.02 0.68 16 39 H 0.07 3.78 5.95 -2.39 -0.01 3.76 16 40 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 41 H 0.03 1.31 7.99 -2.38 -0.02 1.29 16 42 H 0.03 1.58 6.89 -2.39 -0.02 1.57 16 43 H 0.07 2.94 5.87 -2.39 -0.01 2.92 16 44 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -67.40 346.08 4.17 -63.23 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.01 Total: 17.15 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 7.01 Total: 12.20 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.54 Total: -118.16 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.30 Total: 1.68 kcal Total: -67.40 4.17 -63.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997937045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.196 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds