Wall clock time and date at job start Tue Mar 31 2020 13:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46713 * 2 1 4 4 C 1.34781 * 120.00113 * 271.30292 * 3 2 1 5 5 O 1.21687 * 119.99652 * 185.79434 * 4 3 2 6 6 C 1.46681 * 119.99866 * 5.78920 * 4 3 2 7 7 C 1.35658 * 126.12686 * 186.77779 * 6 4 3 8 8 N 1.30945 * 114.19097 * 180.02562 * 7 6 4 9 9 C 1.29433 * 117.36095 * 359.97438 * 8 7 6 10 10 S 1.70954 * 110.39204 * 359.72390 * 9 8 7 11 11 C 1.46501 * 120.00206 * 91.30491 * 3 2 1 12 12 H 1.09006 * 109.20262 * 359.97438 * 11 3 2 13 13 C 1.50126 * 109.21139 * 119.35672 * 11 3 2 14 14 C 1.52525 * 105.41500 * 218.02894 * 13 11 3 15 15 C 1.46240 * 114.27891 * 270.59340 * 14 13 11 16 16 N 1.50174 * 107.53279 * 58.40973 * 15 14 13 17 17 C 1.36930 * 120.53712 * 109.61242 * 16 15 14 18 18 H 1.08000 * 120.00285 * 151.34475 * 17 16 15 19 19 C 1.38816 * 120.00072 * 331.34019 * 17 16 15 20 20 N 1.31620 * 120.00073 * 349.60295 * 19 17 16 21 21 Si 1.86797 * 120.00168 * 169.60678 * 19 17 16 22 22 H 1.48504 * 109.47377 * 89.99694 * 21 19 17 23 23 H 1.48496 * 109.47242 * 210.00088 * 21 19 17 24 24 H 1.48505 * 109.46888 * 329.99824 * 21 19 17 25 25 C 1.43433 * 118.92270 * 289.58942 * 16 15 14 26 26 C 1.54837 * 109.20989 * 240.63851 * 11 3 2 27 27 H 1.09011 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47123 * 299.99350 * 1 2 3 29 29 H 1.09000 * 109.47358 * 59.99907 * 1 2 3 30 30 H 1.09001 * 109.47123 * 240.00650 * 2 1 3 31 31 H 1.09000 * 109.47358 * 120.00093 * 2 1 3 32 32 H 1.08000 * 122.90798 * 0.03919 * 7 6 4 33 33 H 1.07998 * 124.79851 * 180.02562 * 9 8 7 34 34 H 1.08997 * 110.24782 * 337.00218 * 13 11 3 35 35 H 1.09002 * 110.24778 * 99.05753 * 13 11 3 36 36 H 1.08994 * 108.52557 * 31.83858 * 14 13 11 37 37 H 1.09003 * 108.52104 * 149.35572 * 14 13 11 38 38 H 1.08997 * 109.84765 * 177.91785 * 15 14 13 39 39 H 1.09003 * 109.84409 * 298.90176 * 15 14 13 40 40 H 0.97000 * 120.00319 * 179.97438 * 20 19 17 41 41 H 1.09004 * 108.15984 * 213.28494 * 25 16 15 42 42 H 1.09001 * 108.16059 * 330.06016 * 25 16 15 43 43 H 1.09001 * 109.36295 * 320.99250 * 26 11 3 44 44 H 1.09001 * 109.36372 * 80.58022 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2178 2.0255 -1.1669 5 8 2.7220 3.1329 -1.1719 6 6 1.8273 1.3916 -2.4307 7 6 2.0850 1.8645 -3.6758 8 7 1.6272 1.1088 -4.6422 9 6 0.9997 0.0279 -4.3058 10 16 0.9464 -0.1247 -2.6039 11 6 2.2896 2.0623 1.2684 12 1 2.0695 1.3847 2.0934 13 6 3.7389 2.4503 1.3205 14 6 4.1671 2.2254 2.7670 15 6 3.9770 3.3849 3.6376 16 7 2.5195 3.7448 3.6002 17 6 1.7225 3.5338 4.6934 18 1 0.8627 4.1645 4.8647 19 6 2.0194 2.5090 5.5814 20 7 2.9356 1.6158 5.2731 21 14 1.1186 2.3975 7.2141 22 1 -0.1016 1.5670 7.0505 23 1 2.0077 1.7767 8.2286 24 1 0.7336 3.7604 7.6609 25 6 1.9761 4.3135 2.4008 26 6 1.3820 3.3118 1.3801 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.6216 2.7845 -3.8546 33 1 0.5746 -0.6800 -5.0018 34 1 4.3229 1.8183 0.6515 35 1 3.8584 3.4996 1.0505 36 1 3.5946 1.3909 3.1719 37 1 5.2227 1.9539 2.7775 38 1 4.2702 3.1343 4.6571 39 1 4.5742 4.2216 3.2751 40 1 3.1434 0.8999 5.8938 41 1 1.1922 5.0165 2.6831 42 1 2.7671 4.8729 1.9013 43 1 1.3061 3.7917 0.4044 44 1 0.3882 3.0083 1.7094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997938690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:36 Heat of formation + Delta-G solvation = 55.862440 kcal Electronic energy + Delta-G solvation = -26709.497783 eV Core-core repulsion = 23176.445437 eV Total energy + Delta-G solvation = -3533.052345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38695 -39.44301 -37.35061 -35.79838 -33.27773 -31.52934 -31.11579 -30.50071 -29.31148 -26.46718 -25.73786 -24.14648 -23.64249 -23.18799 -21.24607 -19.93052 -19.68223 -19.24816 -17.74682 -16.91910 -16.39988 -16.18577 -15.39922 -15.04763 -14.90714 -14.41084 -14.27393 -14.00486 -13.79045 -13.72279 -13.44889 -13.16154 -12.80213 -12.47263 -12.26160 -11.97554 -11.77782 -11.65367 -11.61017 -11.29708 -11.18912 -10.86755 -10.58681 -10.41592 -10.06562 -9.94273 -9.79757 -9.75589 -9.60044 -9.43603 -9.30412 -9.24960 -9.03268 -8.45846 -8.31621 -6.61860 -5.78139 -3.25587 0.16405 1.09854 1.50014 2.44159 3.13138 3.27665 3.35083 3.42678 3.45074 4.13079 4.48744 4.53836 4.77652 5.01030 5.06600 5.20113 5.28050 5.36247 5.45878 5.62479 5.64838 5.68903 5.82276 5.95581 6.05169 6.14025 6.18733 6.35362 6.42784 6.46421 6.64915 6.73739 6.85142 6.94379 7.03222 7.05102 7.20279 7.34194 7.45928 7.64091 7.66093 7.75593 8.01349 8.29660 8.47597 9.21719 9.86596 10.42895 11.27949 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.003779 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.873199 B = 7406.964990 C = 7949.998503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 N -0.602 5.602 4 C 0.588 3.412 5 O -0.516 6.516 6 C -0.287 4.287 7 C 0.107 3.893 8 N -0.481 5.481 9 C -0.019 4.019 10 S 0.209 5.791 11 C 0.167 3.833 12 H 0.101 0.899 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.167 3.833 16 N -0.590 5.590 17 C -0.245 4.245 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.164 3.836 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.185 0.815 33 H 0.196 0.804 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.004 0.996 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -7.317 -14.517 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 N -0.334 5.334 4 C 0.374 3.626 5 O -0.394 6.394 6 C -0.412 4.412 7 C -0.050 4.050 8 N -0.195 5.195 9 C -0.312 4.312 10 S 0.465 5.535 11 C 0.067 3.933 12 H 0.119 0.881 13 C -0.153 4.153 14 C -0.169 4.169 15 C 0.044 3.956 16 N -0.312 5.312 17 C -0.375 4.375 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.034 3.966 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.202 0.798 33 H 0.212 0.788 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.022 0.978 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.582 -7.531 -14.306 16.560 hybrid contribution -0.218 0.270 0.455 0.572 sum -3.800 -7.260 -13.851 16.094 Atomic orbital electron populations 1.22418 0.95439 1.02916 1.03069 1.21885 0.95110 0.83503 1.02935 1.48462 1.64852 1.13349 1.06735 1.16772 0.78999 0.85172 0.81677 1.90830 1.43127 1.19105 1.86307 1.26094 1.12934 1.02136 1.00002 1.22212 0.97476 0.99921 0.85411 1.66358 1.11894 1.04779 1.36455 1.29249 1.01026 0.98836 1.02121 1.84742 1.48858 1.18708 1.01185 1.21445 0.95590 0.94676 0.81584 0.88088 1.21365 0.94354 1.01679 0.97898 1.20993 0.99227 1.03653 0.93004 1.20135 0.83003 0.92140 1.00350 1.44203 1.04633 1.73745 1.08610 1.19224 1.08383 1.09514 1.00353 0.91836 1.25036 0.99108 0.95468 0.99746 1.69887 1.34682 1.15074 1.35453 0.86306 0.78978 0.77620 0.83877 1.21608 1.21707 1.20654 1.20311 0.95977 0.93095 0.87174 1.23224 0.98327 0.97259 1.00284 0.90860 0.90812 0.92026 0.90809 0.88466 0.79769 0.78761 0.93530 0.91276 0.88124 0.95502 0.89222 0.97806 0.93806 0.94956 0.95038 0.92225 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.01 37.16 0.33 -1.56 16 2 C 0.09 1.09 5.60 -4.04 -0.02 1.07 16 3 N -0.60 -9.42 2.29 -168.16 -0.39 -9.80 16 4 C 0.59 9.58 6.78 -12.85 -0.09 9.49 16 5 O -0.52 -9.96 14.14 5.20 0.07 -9.88 16 6 C -0.29 -3.83 6.20 -37.10 -0.23 -4.06 16 7 C 0.11 1.40 11.10 -18.85 -0.21 1.19 16 8 N -0.48 -5.90 10.51 -15.38 -0.16 -6.06 16 9 C -0.02 -0.17 12.22 51.75 0.63 0.46 16 10 S 0.21 1.93 15.51 -107.50 -1.67 0.26 16 11 C 0.17 3.14 2.30 -68.39 -0.16 2.98 16 12 H 0.10 2.12 6.45 -51.93 -0.33 1.79 16 13 C -0.11 -2.25 4.11 -28.40 -0.12 -2.36 16 14 C -0.13 -2.77 4.99 -30.19 -0.15 -2.92 16 15 C 0.17 3.90 5.23 -5.20 -0.03 3.87 16 16 N -0.59 -14.32 2.59 -175.10 -0.45 -14.77 16 17 C -0.24 -6.43 9.62 -15.06 -0.14 -6.57 16 18 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 19 C 0.00 0.10 5.09 -17.43 -0.09 0.01 16 20 N -0.91 -23.88 9.10 55.49 0.50 -23.37 16 21 Si 0.90 20.90 29.57 -169.99 -5.03 15.87 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.16 3.55 5.18 -4.68 -0.02 3.53 16 26 C -0.15 -2.94 5.79 -24.78 -0.14 -3.08 16 27 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.64 5.92 -40.75 -0.24 0.40 16 30 H 0.07 0.77 4.65 -24.45 -0.11 0.65 16 31 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16 32 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.07 1.45 5.95 -51.93 -0.31 1.14 16 36 H 0.10 2.39 5.13 -51.93 -0.27 2.12 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 2.31 6.16 -51.93 -0.32 1.99 16 39 H 0.00 0.09 8.12 -51.93 -0.42 -0.34 16 40 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.03 0.70 8.00 -51.93 -0.42 0.28 16 42 H 0.03 0.67 6.88 -51.93 -0.36 0.32 16 43 H 0.06 1.18 6.15 -51.93 -0.32 0.86 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -29.25 342.26 -8.39 -37.64 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.00 Total: 2.91 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.44 Total: 2.04 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.50 Total: -54.00 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.67 Total: 0.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.25 -8.39 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997938690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.504 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds