Wall clock time and date at job start Tue Mar 31 2020 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46713 * 2 1 4 4 C 1.34781 * 120.00113 * 271.30292 * 3 2 1 5 5 O 1.21687 * 119.99652 * 185.79434 * 4 3 2 6 6 C 1.46681 * 119.99866 * 5.78920 * 4 3 2 7 7 C 1.35658 * 126.12686 * 186.77779 * 6 4 3 8 8 N 1.30945 * 114.19097 * 180.02562 * 7 6 4 9 9 C 1.29433 * 117.36095 * 359.97438 * 8 7 6 10 10 S 1.70954 * 110.39204 * 359.72390 * 9 8 7 11 11 C 1.46501 * 120.00206 * 91.30491 * 3 2 1 12 12 H 1.09006 * 109.20262 * 359.97438 * 11 3 2 13 13 C 1.50126 * 109.21139 * 119.35672 * 11 3 2 14 14 C 1.52525 * 105.41500 * 218.02894 * 13 11 3 15 15 C 1.46240 * 114.27891 * 270.59340 * 14 13 11 16 16 N 1.50174 * 107.53279 * 58.40973 * 15 14 13 17 17 C 1.36930 * 120.53712 * 109.61242 * 16 15 14 18 18 H 1.08000 * 120.00285 * 151.34475 * 17 16 15 19 19 C 1.38816 * 120.00072 * 331.34019 * 17 16 15 20 20 N 1.31620 * 120.00073 * 349.60295 * 19 17 16 21 21 Si 1.86797 * 120.00168 * 169.60678 * 19 17 16 22 22 H 1.48504 * 109.47377 * 89.99694 * 21 19 17 23 23 H 1.48496 * 109.47242 * 210.00088 * 21 19 17 24 24 H 1.48505 * 109.46888 * 329.99824 * 21 19 17 25 25 C 1.43433 * 118.92270 * 289.58942 * 16 15 14 26 26 C 1.54837 * 109.20989 * 240.63851 * 11 3 2 27 27 H 1.09011 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47123 * 299.99350 * 1 2 3 29 29 H 1.09000 * 109.47358 * 59.99907 * 1 2 3 30 30 H 1.09001 * 109.47123 * 240.00650 * 2 1 3 31 31 H 1.09000 * 109.47358 * 120.00093 * 2 1 3 32 32 H 1.08000 * 122.90798 * 0.03919 * 7 6 4 33 33 H 1.07998 * 124.79851 * 180.02562 * 9 8 7 34 34 H 1.08997 * 110.24782 * 337.00218 * 13 11 3 35 35 H 1.09002 * 110.24778 * 99.05753 * 13 11 3 36 36 H 1.08994 * 108.52557 * 31.83858 * 14 13 11 37 37 H 1.09003 * 108.52104 * 149.35572 * 14 13 11 38 38 H 1.08997 * 109.84765 * 177.91785 * 15 14 13 39 39 H 1.09003 * 109.84409 * 298.90176 * 15 14 13 40 40 H 0.97000 * 120.00319 * 179.97438 * 20 19 17 41 41 H 1.09004 * 108.15984 * 213.28494 * 25 16 15 42 42 H 1.09001 * 108.16059 * 330.06016 * 25 16 15 43 43 H 1.09001 * 109.36295 * 320.99250 * 26 11 3 44 44 H 1.09001 * 109.36372 * 80.58022 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2178 2.0255 -1.1669 5 8 2.7220 3.1329 -1.1719 6 6 1.8273 1.3916 -2.4307 7 6 2.0850 1.8645 -3.6758 8 7 1.6272 1.1088 -4.6422 9 6 0.9997 0.0279 -4.3058 10 16 0.9464 -0.1247 -2.6039 11 6 2.2896 2.0623 1.2684 12 1 2.0695 1.3847 2.0934 13 6 3.7389 2.4503 1.3205 14 6 4.1671 2.2254 2.7670 15 6 3.9770 3.3849 3.6376 16 7 2.5195 3.7448 3.6002 17 6 1.7225 3.5338 4.6934 18 1 0.8627 4.1645 4.8647 19 6 2.0194 2.5090 5.5814 20 7 2.9356 1.6158 5.2731 21 14 1.1186 2.3975 7.2141 22 1 -0.1016 1.5670 7.0505 23 1 2.0077 1.7767 8.2286 24 1 0.7336 3.7604 7.6609 25 6 1.9761 4.3135 2.4008 26 6 1.3820 3.3118 1.3801 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.6216 2.7845 -3.8546 33 1 0.5746 -0.6800 -5.0018 34 1 4.3229 1.8183 0.6515 35 1 3.8584 3.4996 1.0505 36 1 3.5946 1.3909 3.1719 37 1 5.2227 1.9539 2.7775 38 1 4.2702 3.1343 4.6571 39 1 4.5742 4.2216 3.2751 40 1 3.1434 0.8999 5.8938 41 1 1.1922 5.0165 2.6831 42 1 2.7671 4.8729 1.9013 43 1 1.3061 3.7917 0.4044 44 1 0.3882 3.0083 1.7094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997938690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:35 Heat of formation + Delta-G solvation = 39.078260 kcal Electronic energy + Delta-G solvation = -26710.225599 eV Core-core repulsion = 23176.445437 eV Total energy + Delta-G solvation = -3533.780162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62689 -40.46113 -38.98645 -37.09149 -34.95681 -33.32666 -32.74348 -31.48876 -30.66474 -28.02715 -26.96791 -25.81300 -24.96290 -24.55376 -22.46595 -21.69519 -20.79936 -20.57706 -18.93338 -18.59823 -17.68199 -17.29446 -16.98342 -16.44154 -16.38133 -15.69864 -15.52386 -15.40430 -15.09288 -14.92671 -14.84072 -14.48275 -14.18680 -13.98740 -13.77188 -13.54646 -13.17418 -13.09080 -12.85777 -12.67255 -12.56659 -12.51805 -12.28497 -12.15365 -11.89284 -11.59710 -11.49685 -11.30077 -11.17405 -10.86084 -10.49340 -10.40998 -10.40406 -9.87428 -9.61179 -8.56195 -7.77715 -5.28136 -0.72338 0.24696 0.68092 1.47063 1.49909 1.53050 1.60462 1.91718 2.15493 2.55996 3.28534 3.36103 3.52802 3.64573 3.81892 3.98087 4.07831 4.19883 4.22652 4.36232 4.39167 4.40672 4.49037 4.65282 4.70091 4.77690 4.80665 4.88311 4.97575 5.03593 5.06409 5.14951 5.19505 5.28252 5.31692 5.37278 5.54206 5.67070 5.70008 5.77680 6.16838 6.35388 6.48503 6.64529 7.05304 7.22403 7.90929 8.45548 9.25761 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.003779 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.873199 B = 7406.964990 C = 7949.998503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.604 5.604 4 C 0.586 3.414 5 O -0.558 6.558 6 C -0.327 4.327 7 C 0.109 3.891 8 N -0.510 5.510 9 C -0.004 4.004 10 S 0.275 5.725 11 C 0.181 3.819 12 H 0.080 0.920 13 C -0.100 4.100 14 C -0.118 4.118 15 C 0.171 3.829 16 N -0.601 5.601 17 C -0.264 4.264 18 H 0.057 0.943 19 C -0.032 4.032 20 N -0.916 5.916 21 Si 0.960 3.040 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.163 3.837 26 C -0.136 4.136 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.177 0.823 33 H 0.236 0.764 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.011 0.989 40 H 0.249 0.751 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 -9.459 -15.909 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.040 4.040 3 N -0.335 5.335 4 C 0.374 3.626 5 O -0.438 6.438 6 C -0.451 4.451 7 C -0.050 4.050 8 N -0.224 5.224 9 C -0.296 4.296 10 S 0.532 5.468 11 C 0.079 3.921 12 H 0.098 0.902 13 C -0.138 4.138 14 C -0.157 4.157 15 C 0.047 3.953 16 N -0.323 5.323 17 C -0.394 4.394 18 H 0.075 0.925 19 C -0.229 4.229 20 N -0.561 5.561 21 Si 0.789 3.211 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.034 3.966 26 C -0.178 4.178 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.194 0.806 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.852 -9.708 -15.712 19.096 hybrid contribution 0.145 0.889 0.820 1.218 sum -4.707 -8.820 -14.892 17.936 Atomic orbital electron populations 1.22404 0.94031 1.04819 1.02131 1.22158 0.96251 0.81517 1.04048 1.48396 1.64987 1.14638 1.05516 1.17125 0.78146 0.84763 0.82558 1.90795 1.45000 1.20939 1.87079 1.25801 1.15753 1.05128 0.98408 1.22220 0.97073 0.99929 0.85731 1.66430 1.13562 1.06061 1.36326 1.29970 0.98547 0.98000 1.03131 1.84343 1.46682 1.15153 1.00588 1.20971 0.94667 0.93856 0.82622 0.90235 1.21187 0.95122 1.00872 0.96620 1.20800 0.99414 1.01922 0.93596 1.20043 0.82844 0.93081 0.99291 1.44279 1.04834 1.74098 1.09070 1.19371 1.08709 1.09807 1.01511 0.92484 1.25609 0.99878 0.95242 1.02140 1.70030 1.35187 1.15049 1.35875 0.85405 0.77860 0.77333 0.80478 1.21273 1.21948 1.20598 1.20333 0.95898 0.93446 0.86882 1.23020 0.98086 0.97267 0.99385 0.87474 0.93003 0.91735 0.88718 0.88477 0.80600 0.74745 0.92830 0.92654 0.90148 0.94612 0.91786 0.97086 0.94132 0.95252 0.95033 0.92217 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 9.01 71.98 0.65 -2.63 16 2 C 0.08 1.87 5.60 86.38 0.48 2.35 16 3 N -0.60 -18.64 2.29 -804.17 -1.84 -20.48 16 4 C 0.59 18.98 6.78 86.45 0.59 19.56 16 5 O -0.56 -21.96 14.14 -4.31 -0.06 -22.02 16 6 C -0.33 -8.27 6.20 23.88 0.15 -8.12 16 7 C 0.11 2.76 11.10 84.23 0.93 3.69 16 8 N -0.51 -11.33 10.51 -202.56 -2.13 -13.46 16 9 C 0.00 -0.06 12.22 130.60 1.60 1.53 16 10 S 0.28 4.12 15.51 -56.49 -0.88 3.24 16 11 C 0.18 6.86 2.30 44.69 0.10 6.96 16 12 H 0.08 3.41 6.45 -2.38 -0.02 3.39 16 13 C -0.10 -3.95 4.11 29.51 0.12 -3.83 16 14 C -0.12 -5.13 4.99 28.36 0.14 -4.99 16 15 C 0.17 8.14 5.23 83.58 0.44 8.58 16 16 N -0.60 -29.76 2.59 -707.89 -1.83 -31.59 16 17 C -0.26 -14.07 9.62 84.04 0.81 -13.27 16 18 H 0.06 3.06 7.85 -2.91 -0.02 3.04 16 19 C -0.03 -1.70 5.09 84.86 0.43 -1.27 16 20 N -0.92 -48.86 9.10 21.65 0.20 -48.66 16 21 Si 0.96 43.12 29.57 68.60 2.03 45.14 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.16 7.23 5.18 87.58 0.45 7.69 16 26 C -0.14 -5.46 5.79 31.86 0.18 -5.28 16 27 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.17 5.92 -9.49 -0.06 1.11 16 30 H 0.10 1.69 4.65 -19.86 -0.09 1.60 16 31 H 0.10 2.20 7.88 -2.39 -0.02 2.18 16 32 H 0.18 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 35 H 0.05 2.36 5.95 -2.39 -0.01 2.35 16 36 H 0.08 3.88 5.13 -2.39 -0.01 3.87 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 3.38 6.16 -2.39 -0.01 3.37 16 39 H 0.01 0.50 8.12 -2.39 -0.02 0.48 16 40 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 41 H 0.03 1.29 8.00 -2.39 -0.02 1.28 16 42 H 0.03 1.38 6.88 -2.39 -0.02 1.36 16 43 H 0.06 2.41 6.15 -2.39 -0.01 2.39 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.41 342.26 3.45 -60.96 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.89 Total: 15.90 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.08 Total: 10.97 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -5.61 Total: -114.20 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -0.88 Total: 3.24 kcal Total: -64.41 3.45 -60.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997938690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.041 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds