Wall clock time and date at job start Tue Mar 31 2020 13:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46753 * 2 1 4 4 C 1.34773 * 120.00103 * 274.49623 * 3 2 1 5 5 O 1.21631 * 120.00180 * 184.91693 * 4 3 2 6 6 C 1.47103 * 119.99854 * 4.91796 * 4 3 2 7 7 C 1.38390 * 127.99580 * 186.14287 * 6 4 3 8 8 C 1.37575 * 111.25921 * 179.97438 * 7 6 4 9 9 N 1.29553 * 117.95527 * 0.02562 * 8 7 6 10 10 S 1.56313 * 110.37649 * 359.68902 * 9 8 7 11 11 C 1.46500 * 120.00061 * 94.50370 * 3 2 1 12 12 H 1.08998 * 108.44766 * 2.30303 * 11 3 2 13 13 C 1.52574 * 108.38962 * 244.68256 * 11 3 2 14 14 C 1.50879 * 109.36129 * 153.81930 * 13 11 3 15 15 C 1.53946 * 110.09703 * 91.88632 * 14 13 11 16 16 N 1.47604 * 112.14326 * 319.44104 * 15 14 13 17 17 C 1.36943 * 118.64713 * 137.83993 * 16 15 14 18 18 H 1.07998 * 119.99942 * 207.37124 * 17 16 15 19 19 C 1.38809 * 119.99563 * 27.37349 * 17 16 15 20 20 N 1.31621 * 120.00321 * 14.14679 * 19 17 16 21 21 Si 1.86798 * 119.99733 * 194.14937 * 19 17 16 22 22 H 1.48503 * 109.47000 * 59.99654 * 21 19 17 23 23 H 1.48502 * 109.47292 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47319 * 300.00015 * 21 19 17 25 25 C 1.44580 * 122.71111 * 317.86886 * 16 15 14 26 26 C 1.47092 * 108.51668 * 119.99605 * 11 3 2 27 27 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47675 * 300.00475 * 1 2 3 29 29 H 1.09004 * 109.46767 * 60.00330 * 1 2 3 30 30 H 1.08994 * 109.47386 * 239.99939 * 2 1 3 31 31 H 1.08996 * 109.46544 * 119.99378 * 2 1 3 32 32 H 1.07997 * 124.37230 * 0.04284 * 7 6 4 33 33 H 1.08004 * 121.02465 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.48599 * 33.85686 * 13 11 3 35 35 H 1.08999 * 109.49354 * 273.78783 * 13 11 3 36 36 H 1.09001 * 109.36247 * 331.70010 * 14 13 11 37 37 H 1.08996 * 109.36937 * 212.08225 * 14 13 11 38 38 H 1.09009 * 108.94424 * 80.11991 * 15 14 13 39 39 H 1.08999 * 108.94916 * 198.75239 * 15 14 13 40 40 H 0.96994 * 119.99866 * 180.02562 * 20 19 17 41 41 H 1.08992 * 109.45038 * 210.76695 * 25 16 15 42 42 H 1.09005 * 109.44631 * 330.68560 * 25 16 15 43 43 H 1.09004 * 109.33023 * 63.63452 * 26 11 3 44 44 H 1.09002 * 109.32800 * 304.15911 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1566 2.0471 -1.1636 5 8 2.6455 3.1608 -1.1726 6 6 1.7162 1.4270 -2.4227 7 6 1.8830 1.9036 -3.7111 8 6 1.3358 1.0443 -4.6357 9 7 0.7686 -0.0358 -4.1998 10 16 0.8567 -0.1056 -2.6407 11 6 2.3563 2.0387 1.2648 12 1 2.2150 1.3226 2.0743 13 6 1.3930 3.2031 1.4745 14 6 1.2607 3.4831 2.9512 15 6 2.2889 4.5446 3.3825 16 7 3.6009 4.3430 2.7370 17 6 4.2753 5.4373 2.2647 18 1 4.9647 5.3322 1.4400 19 6 4.0728 6.6814 2.8460 20 7 3.4622 6.7732 4.0084 21 14 4.6667 8.2254 1.9784 22 1 4.0031 8.3356 0.6544 23 1 4.3307 9.4155 2.8006 24 1 6.1379 8.1526 1.7901 25 6 4.2031 3.0377 2.5821 26 6 3.7749 2.4255 1.2257 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 2.3798 2.8300 -3.9590 33 1 1.3778 1.2634 -5.6925 34 1 0.4165 2.9456 1.0643 35 1 1.7779 4.0891 0.9694 36 1 1.4342 2.5637 3.5103 37 1 0.2552 3.8475 3.1614 38 1 1.9114 5.5319 3.1160 39 1 2.4154 4.4959 4.4640 40 1 3.3204 7.6426 4.4143 41 1 5.2885 3.1331 2.6108 42 1 3.8747 2.3880 3.3934 43 1 3.9271 3.1596 0.4344 44 1 4.3834 1.5450 1.0191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998026296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:21 Heat of formation + Delta-G solvation = 49.029119 kcal Electronic energy + Delta-G solvation = -26544.033332 eV Core-core repulsion = 23010.684672 eV Total energy + Delta-G solvation = -3533.348660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40808 -39.22296 -37.30218 -35.88352 -33.52397 -31.80876 -31.41220 -30.85559 -29.49534 -26.51199 -25.73301 -24.09125 -23.70991 -23.28644 -21.65299 -20.19424 -19.42711 -19.17069 -17.96122 -16.96516 -16.63036 -15.88667 -15.50124 -15.24564 -14.95726 -14.56914 -14.34985 -13.90371 -13.79704 -13.61414 -13.32329 -13.19629 -12.93330 -12.78362 -12.37473 -12.14278 -11.99996 -11.64985 -11.46288 -11.23706 -11.08362 -10.73550 -10.72706 -10.56567 -10.45066 -10.31008 -10.07211 -9.78902 -9.70426 -9.64765 -9.55488 -9.32034 -8.79840 -8.54322 -8.29545 -6.54848 -5.67636 -3.11356 0.19249 1.12219 1.78692 2.11222 2.93780 3.17584 3.46686 3.51078 3.55286 4.28245 4.59016 4.60405 4.84958 4.88797 4.93575 5.08791 5.24231 5.40754 5.45755 5.48727 5.54839 5.56676 5.65788 5.69674 5.78987 5.95071 6.03869 6.10655 6.15638 6.36637 6.37277 6.49543 6.57741 6.68163 6.80862 6.84701 6.92222 7.08369 7.20133 7.51292 7.55754 7.79513 7.94336 8.25232 8.58979 9.35428 10.01646 10.46081 11.39852 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.003909 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.148118 B = 7160.832486 C = 8060.547454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 N -0.608 5.608 4 C 0.587 3.413 5 O -0.496 6.496 6 C -0.265 4.265 7 C -0.116 4.116 8 C 0.058 3.942 9 N -0.553 5.553 10 S 0.434 5.566 11 C 0.177 3.823 12 H 0.071 0.929 13 C -0.113 4.113 14 C -0.140 4.140 15 C 0.179 3.821 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.908 5.908 21 Si 0.899 3.101 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.166 3.834 26 C -0.172 4.172 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.252 0.748 41 H 0.048 0.952 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -16.886 -10.231 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.033 4.033 3 N -0.342 5.342 4 C 0.373 3.627 5 O -0.371 6.371 6 C -0.398 4.398 7 C -0.151 4.151 8 C -0.134 4.134 9 N -0.381 5.381 10 S 0.590 5.410 11 C 0.077 3.923 12 H 0.089 0.911 13 C -0.152 4.152 14 C -0.180 4.180 15 C 0.054 3.946 16 N -0.308 5.308 17 C -0.380 4.380 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.553 5.553 21 Si 0.729 3.271 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.210 1.210 25 C 0.037 3.963 26 C -0.213 4.213 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.111 0.889 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.940 -18.041 -9.818 22.021 hybrid contribution 0.976 2.295 -1.256 2.792 sum -6.964 -15.747 -11.074 20.472 Atomic orbital electron populations 1.22461 0.95534 1.03099 1.03081 1.21840 0.94980 0.83419 1.03101 1.48384 1.65464 1.13372 1.06950 1.16786 0.79193 0.85234 0.81518 1.90890 1.42223 1.18385 1.85579 1.27106 1.10160 1.03818 0.98761 1.22147 1.00681 1.02126 0.90168 1.22193 0.98441 0.89949 1.02782 1.72064 1.24611 1.25552 1.15908 1.82327 1.44885 1.16221 0.97545 1.20172 0.96215 0.94128 0.81808 0.91066 1.21327 0.96623 0.99524 0.97709 1.22004 1.00372 1.00590 0.94998 1.21007 0.82877 0.96030 0.94710 1.43605 1.16827 1.01454 1.68943 1.19163 1.21565 0.86765 1.10470 0.91883 1.25002 1.00469 0.98430 0.95485 1.70045 1.46851 1.23172 1.15249 0.86414 0.78610 0.82950 0.79079 1.21035 1.21783 1.20981 1.20540 0.96420 0.87382 0.91988 1.22076 0.93754 1.01149 1.04302 0.90595 0.90880 0.92105 0.91025 0.88649 0.80840 0.80690 0.93835 0.89264 0.93794 0.92814 0.90773 0.95810 0.93808 0.93349 0.95215 0.88874 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.96 37.16 0.33 -1.13 16 2 C 0.09 0.86 5.64 -4.04 -0.02 0.84 16 3 N -0.61 -8.32 2.26 -171.01 -0.39 -8.71 16 4 C 0.59 9.23 7.02 -12.67 -0.09 9.14 16 5 O -0.50 -9.95 13.85 5.25 0.07 -9.87 16 6 C -0.26 -3.37 6.30 -35.93 -0.23 -3.60 16 7 C -0.12 -1.33 10.40 -39.77 -0.41 -1.74 16 8 C 0.06 0.59 11.14 -18.75 -0.21 0.38 16 9 N -0.55 -6.27 11.29 21.63 0.24 -6.03 16 10 S 0.43 4.29 16.03 -107.50 -1.72 2.57 16 11 C 0.18 2.83 1.96 -70.98 -0.14 2.69 16 12 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 13 C -0.11 -2.06 4.35 -28.01 -0.12 -2.18 16 14 C -0.14 -2.59 5.71 -27.30 -0.16 -2.74 16 15 C 0.18 4.24 4.66 -2.94 -0.01 4.23 16 16 N -0.59 -14.57 2.27 -172.09 -0.39 -14.96 16 17 C -0.25 -6.96 9.44 -15.06 -0.14 -7.10 16 18 H 0.06 1.78 7.87 -52.49 -0.41 1.36 16 19 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 20 N -0.91 -26.52 10.98 55.49 0.61 -25.91 16 21 Si 0.90 22.47 29.58 -169.99 -5.03 17.44 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 25 C 0.17 3.45 5.65 -4.09 -0.02 3.43 16 26 C -0.17 -3.16 4.83 -28.58 -0.14 -3.30 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.54 5.67 -38.27 -0.22 0.33 16 30 H 0.07 0.60 4.94 -28.19 -0.14 0.46 16 31 H 0.10 0.73 7.78 -51.93 -0.40 0.33 16 32 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.09 2.02 6.84 -51.93 -0.36 1.67 16 36 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 2.00 6.35 -51.92 -0.33 1.67 16 39 H 0.02 0.61 8.02 -51.93 -0.42 0.19 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 42 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 43 H 0.09 2.06 5.89 -51.93 -0.31 1.75 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -32.51 347.18 -9.06 -41.56 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.24 Total: -0.27 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.45 Total: -1.05 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.08 Total: -55.61 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.72 Total: 2.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.51 -9.06 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998026296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.593 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds