Wall clock time and date at job start Tue Mar 31 2020 13:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46753 * 2 1 4 4 C 1.34773 * 120.00103 * 274.49623 * 3 2 1 5 5 O 1.21631 * 120.00180 * 184.91693 * 4 3 2 6 6 C 1.47103 * 119.99854 * 4.91796 * 4 3 2 7 7 C 1.38390 * 127.99580 * 186.14287 * 6 4 3 8 8 C 1.37575 * 111.25921 * 179.97438 * 7 6 4 9 9 N 1.29553 * 117.95527 * 0.02562 * 8 7 6 10 10 S 1.56313 * 110.37649 * 359.68902 * 9 8 7 11 11 C 1.46500 * 120.00061 * 94.50370 * 3 2 1 12 12 H 1.08998 * 108.44766 * 2.30303 * 11 3 2 13 13 C 1.52574 * 108.38962 * 244.68256 * 11 3 2 14 14 C 1.50879 * 109.36129 * 153.81930 * 13 11 3 15 15 C 1.53946 * 110.09703 * 91.88632 * 14 13 11 16 16 N 1.47604 * 112.14326 * 319.44104 * 15 14 13 17 17 C 1.36943 * 118.64713 * 137.83993 * 16 15 14 18 18 H 1.07998 * 119.99942 * 207.37124 * 17 16 15 19 19 C 1.38809 * 119.99563 * 27.37349 * 17 16 15 20 20 N 1.31621 * 120.00321 * 14.14679 * 19 17 16 21 21 Si 1.86798 * 119.99733 * 194.14937 * 19 17 16 22 22 H 1.48503 * 109.47000 * 59.99654 * 21 19 17 23 23 H 1.48502 * 109.47292 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47319 * 300.00015 * 21 19 17 25 25 C 1.44580 * 122.71111 * 317.86886 * 16 15 14 26 26 C 1.47092 * 108.51668 * 119.99605 * 11 3 2 27 27 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47675 * 300.00475 * 1 2 3 29 29 H 1.09004 * 109.46767 * 60.00330 * 1 2 3 30 30 H 1.08994 * 109.47386 * 239.99939 * 2 1 3 31 31 H 1.08996 * 109.46544 * 119.99378 * 2 1 3 32 32 H 1.07997 * 124.37230 * 0.04284 * 7 6 4 33 33 H 1.08004 * 121.02465 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.48599 * 33.85686 * 13 11 3 35 35 H 1.08999 * 109.49354 * 273.78783 * 13 11 3 36 36 H 1.09001 * 109.36247 * 331.70010 * 14 13 11 37 37 H 1.08996 * 109.36937 * 212.08225 * 14 13 11 38 38 H 1.09009 * 108.94424 * 80.11991 * 15 14 13 39 39 H 1.08999 * 108.94916 * 198.75239 * 15 14 13 40 40 H 0.96994 * 119.99866 * 180.02562 * 20 19 17 41 41 H 1.08992 * 109.45038 * 210.76695 * 25 16 15 42 42 H 1.09005 * 109.44631 * 330.68560 * 25 16 15 43 43 H 1.09004 * 109.33023 * 63.63452 * 26 11 3 44 44 H 1.09002 * 109.32800 * 304.15911 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1566 2.0471 -1.1636 5 8 2.6455 3.1608 -1.1726 6 6 1.7162 1.4270 -2.4227 7 6 1.8830 1.9036 -3.7111 8 6 1.3358 1.0443 -4.6357 9 7 0.7686 -0.0358 -4.1998 10 16 0.8567 -0.1056 -2.6407 11 6 2.3563 2.0387 1.2648 12 1 2.2150 1.3226 2.0743 13 6 1.3930 3.2031 1.4745 14 6 1.2607 3.4831 2.9512 15 6 2.2889 4.5446 3.3825 16 7 3.6009 4.3430 2.7370 17 6 4.2753 5.4373 2.2647 18 1 4.9647 5.3322 1.4400 19 6 4.0728 6.6814 2.8460 20 7 3.4622 6.7732 4.0084 21 14 4.6667 8.2254 1.9784 22 1 4.0031 8.3356 0.6544 23 1 4.3307 9.4155 2.8006 24 1 6.1379 8.1526 1.7901 25 6 4.2031 3.0377 2.5821 26 6 3.7749 2.4255 1.2257 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 2.3798 2.8300 -3.9590 33 1 1.3778 1.2634 -5.6925 34 1 0.4165 2.9456 1.0643 35 1 1.7779 4.0891 0.9694 36 1 1.4342 2.5637 3.5103 37 1 0.2552 3.8475 3.1614 38 1 1.9114 5.5319 3.1160 39 1 2.4154 4.4959 4.4640 40 1 3.3204 7.6426 4.4143 41 1 5.2885 3.1331 2.6108 42 1 3.8747 2.3880 3.3934 43 1 3.9271 3.1596 0.4344 44 1 4.3834 1.5450 1.0191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998026296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:20 Heat of formation + Delta-G solvation = 28.864994 kcal Electronic energy + Delta-G solvation = -26544.907714 eV Core-core repulsion = 23010.684672 eV Total energy + Delta-G solvation = -3534.223042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59567 -40.10922 -38.85604 -37.11420 -35.13791 -33.33053 -32.96229 -32.00364 -30.72506 -28.03030 -27.09979 -25.62472 -24.98489 -24.56167 -22.73034 -21.50501 -20.95855 -20.38084 -19.05895 -18.42953 -17.92265 -17.18770 -16.84122 -16.50416 -16.25888 -15.72329 -15.58682 -15.30623 -15.23615 -15.13283 -14.74967 -14.26866 -14.09146 -13.91842 -13.81470 -13.57903 -13.15815 -12.97107 -12.81292 -12.72853 -12.42829 -12.36186 -12.31714 -12.04594 -11.99776 -11.78627 -11.54883 -11.46385 -11.33400 -11.22073 -10.76562 -10.62859 -10.42641 -9.71680 -9.52836 -8.58674 -7.83067 -5.28214 -0.72573 0.25998 0.98720 1.24995 1.41906 1.45165 1.51839 1.89043 2.08063 2.52142 3.29378 3.35091 3.73605 3.86775 3.91443 4.04389 4.10433 4.13705 4.27583 4.33425 4.45347 4.51208 4.54627 4.62853 4.74296 4.78990 4.88137 4.89868 4.91917 4.99846 5.05883 5.14744 5.18955 5.31341 5.36901 5.46799 5.50627 5.58112 5.63634 5.71514 5.78140 5.86385 6.39168 6.45276 7.11778 7.23011 8.01563 8.36686 9.21033 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.003909 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.148118 B = 7160.832486 C = 8060.547454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 N -0.602 5.602 4 C 0.582 3.418 5 O -0.556 6.556 6 C -0.300 4.300 7 C -0.119 4.119 8 C 0.060 3.940 9 N -0.574 5.574 10 S 0.504 5.496 11 C 0.179 3.821 12 H 0.107 0.893 13 C -0.102 4.102 14 C -0.126 4.126 15 C 0.188 3.812 16 N -0.601 5.601 17 C -0.256 4.256 18 H 0.050 0.950 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.954 3.046 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.161 3.839 26 C -0.155 4.155 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.171 0.829 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.000 1.000 40 H 0.248 0.752 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -20.281 -10.840 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.040 4.040 3 N -0.335 5.335 4 C 0.370 3.630 5 O -0.434 6.434 6 C -0.433 4.433 7 C -0.155 4.155 8 C -0.130 4.130 9 N -0.403 5.403 10 S 0.661 5.339 11 C 0.077 3.923 12 H 0.125 0.875 13 C -0.141 4.141 14 C -0.165 4.165 15 C 0.063 3.937 16 N -0.323 5.323 17 C -0.387 4.387 18 H 0.068 0.932 19 C -0.240 4.240 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.202 1.202 25 C 0.034 3.966 26 C -0.196 4.196 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.189 0.811 33 H 0.220 0.780 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.207 -21.513 -10.433 25.621 hybrid contribution 1.349 3.240 -1.106 3.680 sum -7.858 -18.273 -11.539 22.996 Atomic orbital electron populations 1.22477 0.94258 1.05023 1.02348 1.22226 0.96014 0.80813 1.04974 1.48351 1.64749 1.14890 1.05470 1.17218 0.78310 0.84661 0.82857 1.90872 1.44960 1.21013 1.86603 1.26957 1.12276 1.06233 0.97830 1.22311 1.00547 1.02380 0.90296 1.22402 0.97640 0.89164 1.03834 1.72006 1.25081 1.26042 1.17199 1.81939 1.42541 1.13176 0.96267 1.19979 0.93937 0.94336 0.84042 0.87478 1.21160 0.97845 0.98385 0.96716 1.21839 0.99142 1.00000 0.95507 1.20779 0.83737 0.96025 0.93179 1.43780 1.17430 1.02187 1.68881 1.19322 1.21220 0.88317 1.09849 0.93225 1.25609 1.01387 1.00751 0.96238 1.70179 1.48168 1.23229 1.16301 0.85540 0.78389 0.80029 0.77704 1.21595 1.21420 1.20169 1.20706 0.95643 0.86122 0.94172 1.21812 0.96145 1.00659 1.01016 0.87302 0.91170 0.93290 0.90027 0.85879 0.81124 0.78009 0.92026 0.94584 0.90640 0.91316 0.95003 0.98192 0.94281 0.94687 0.92611 0.92998 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.96 71.98 0.64 -1.49 16 2 C 0.08 1.21 5.64 86.38 0.49 1.69 16 3 N -0.60 -15.23 2.26 -813.21 -1.84 -17.07 16 4 C 0.58 18.21 7.02 86.57 0.61 18.82 16 5 O -0.56 -23.42 13.85 -4.13 -0.06 -23.48 16 6 C -0.30 -7.33 6.30 24.63 0.16 -7.17 16 7 C -0.12 -2.66 10.40 22.15 0.23 -2.42 16 8 C 0.06 1.10 11.14 84.87 0.95 2.05 16 9 N -0.57 -11.47 11.29 -85.49 -0.97 -12.43 16 10 S 0.50 8.47 16.03 -56.49 -0.91 7.56 16 11 C 0.18 5.34 1.96 43.01 0.08 5.43 16 12 H 0.11 2.51 6.87 -2.39 -0.02 2.49 16 13 C -0.10 -3.65 4.35 29.76 0.13 -3.52 16 14 C -0.13 -4.48 5.71 30.22 0.17 -4.31 16 15 C 0.19 9.15 4.66 86.49 0.40 9.56 16 16 N -0.60 -30.72 2.27 -698.36 -1.59 -32.30 16 17 C -0.26 -14.92 9.44 84.03 0.79 -14.13 16 18 H 0.05 2.96 7.87 -2.91 -0.02 2.94 16 19 C -0.04 -2.62 4.90 84.86 0.42 -2.20 16 20 N -0.93 -56.53 10.98 21.65 0.24 -56.30 16 21 Si 0.95 47.93 29.58 68.60 2.03 49.96 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.16 6.68 5.65 87.37 0.49 7.17 16 26 C -0.16 -5.65 4.83 29.39 0.14 -5.50 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.71 5.67 -11.07 -0.06 0.64 16 30 H 0.08 1.04 4.94 -17.49 -0.09 0.95 16 31 H 0.12 1.19 7.78 -2.39 -0.02 1.17 16 32 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 35 H 0.04 1.69 6.84 -2.39 -0.02 1.67 16 36 H 0.08 2.24 7.32 -2.39 -0.02 2.23 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.79 6.35 -2.38 -0.02 1.78 16 39 H 0.00 0.00 8.02 -2.39 -0.02 -0.02 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.03 1.51 7.99 -2.39 -0.02 1.49 16 42 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 43 H 0.05 2.38 5.89 -2.39 -0.01 2.36 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -76.28 347.18 3.50 -72.78 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.88 Total: 7.30 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.71 Total: 3.97 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.15 Total: -118.10 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -0.91 Total: 7.56 kcal Total: -76.28 3.50 -72.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998026296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.643 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds