Wall clock time and date at job start Tue Mar 31 2020 13:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47382 * 2 1 4 4 C 1.34780 * 119.99811 * 82.87022 * 3 2 1 5 5 O 1.21633 * 119.99856 * 182.04750 * 4 3 2 6 6 C 1.47101 * 120.00075 * 2.05848 * 4 3 2 7 7 C 1.38385 * 127.99887 * 173.16539 * 6 4 3 8 8 C 1.37577 * 111.26354 * 179.97438 * 7 6 4 9 9 N 1.29556 * 117.95017 * 0.02562 * 8 7 6 10 10 S 1.56314 * 110.37673 * 359.69177 * 9 8 7 11 11 C 1.46496 * 120.00123 * 262.87817 * 3 2 1 12 12 H 1.09003 * 109.20465 * 359.97438 * 11 3 2 13 13 C 1.50126 * 109.21295 * 119.35987 * 11 3 2 14 14 C 1.52526 * 105.41550 * 218.02774 * 13 11 3 15 15 C 1.46239 * 114.27280 * 270.58932 * 14 13 11 16 16 N 1.50163 * 107.53433 * 58.41209 * 15 14 13 17 17 C 1.36938 * 120.54086 * 109.60851 * 16 15 14 18 18 H 1.07995 * 120.00550 * 145.12230 * 17 16 15 19 19 C 1.38812 * 119.99842 * 325.12060 * 17 16 15 20 20 N 1.31624 * 120.00122 * 343.79617 * 19 17 16 21 21 Si 1.86797 * 120.00113 * 163.79442 * 19 17 16 22 22 H 1.48505 * 109.46880 * 60.00158 * 21 19 17 23 23 H 1.48496 * 109.47094 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47308 * 300.00424 * 21 19 17 25 25 C 1.43438 * 118.92249 * 289.58692 * 16 15 14 26 26 C 1.54849 * 109.20700 * 240.63645 * 11 3 2 27 27 H 1.08999 * 109.46941 * 299.99702 * 1 2 3 28 28 H 1.08997 * 109.47240 * 59.99566 * 1 2 3 29 29 H 1.08999 * 109.47640 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47240 * 120.00434 * 2 1 3 31 31 H 1.08999 * 109.46941 * 240.00298 * 2 1 3 32 32 H 1.08001 * 124.36778 * 359.97438 * 7 6 4 33 33 H 1.07998 * 121.02579 * 180.02562 * 8 7 6 34 34 H 1.09002 * 110.24579 * 336.99541 * 13 11 3 35 35 H 1.08998 * 110.25399 * 99.04825 * 13 11 3 36 36 H 1.08992 * 108.52824 * 31.83379 * 14 13 11 37 37 H 1.09003 * 108.52270 * 149.35244 * 14 13 11 38 38 H 1.09006 * 109.84247 * 177.91569 * 15 14 13 39 39 H 1.09004 * 109.85157 * 298.89863 * 15 14 13 40 40 H 0.96996 * 120.00354 * 179.97438 * 20 19 17 41 41 H 1.09005 * 108.15423 * 213.28833 * 25 16 15 42 42 H 1.09006 * 108.15763 * 330.05749 * 25 16 15 43 43 H 1.09001 * 109.35646 * 320.99611 * 26 11 3 44 44 H 1.08998 * 109.35735 * 80.58485 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1064 2.0648 1.1582 5 8 2.4765 3.2235 1.1539 6 6 1.7552 1.4096 2.4276 7 6 1.9057 1.9035 3.7115 8 6 1.4621 0.9996 4.6490 9 7 0.9896 -0.1305 4.2269 10 16 1.0353 -0.1904 2.6656 11 6 2.4109 2.0194 -1.2589 12 1 2.2703 1.3137 -2.0777 13 6 1.5474 3.2252 -1.4918 14 6 1.2777 3.2469 -2.9928 15 6 2.2689 3.9890 -3.7710 16 7 3.6082 3.3600 -3.5150 17 6 4.2397 2.6439 -4.4966 18 1 5.3163 2.6709 -4.5770 19 6 3.4961 1.8832 -5.3883 20 7 2.2429 1.5874 -5.1153 21 14 4.2737 1.2795 -6.9758 22 1 5.4424 0.4199 -6.6588 23 1 3.2769 0.4954 -7.7483 24 1 4.7199 2.4438 -7.7825 25 6 4.2155 3.5218 -2.2256 26 6 3.9047 2.4199 -1.1829 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.3182 2.8734 3.9471 33 1 1.5064 1.2251 5.7042 34 1 0.6111 3.1306 -0.9416 35 1 2.0741 4.1304 -1.1899 36 1 1.2518 2.2193 -3.3550 37 1 0.2985 3.6949 -3.1623 38 1 2.0279 3.9272 -4.8323 39 1 2.2831 5.0318 -3.4541 40 1 1.7231 1.0562 -5.7386 41 1 5.2961 3.5657 -2.3623 42 1 3.8885 4.4765 -1.8135 43 1 4.1281 2.7940 -0.1837 44 1 4.5238 1.5462 -1.3862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998026297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:23 Heat of formation + Delta-G solvation = 33.879092 kcal Electronic energy + Delta-G solvation = -26713.706194 eV Core-core repulsion = 23179.700579 eV Total energy + Delta-G solvation = -3534.005615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52182 -40.08862 -38.95494 -37.04502 -34.91589 -33.27851 -32.97024 -32.01864 -30.73846 -28.08333 -27.06560 -25.72729 -24.85383 -24.54232 -22.65165 -21.66015 -20.90835 -20.32564 -18.91656 -18.48912 -17.84495 -17.08608 -16.92034 -16.52534 -16.16625 -15.78624 -15.66054 -15.34136 -15.19372 -14.91308 -14.63155 -14.27875 -14.03487 -13.97775 -13.85377 -13.31275 -13.19956 -13.17860 -12.86588 -12.65000 -12.49552 -12.29108 -12.26636 -12.09834 -11.91332 -11.62815 -11.50382 -11.37700 -11.19678 -11.03241 -10.79509 -10.68027 -10.43879 -9.69014 -9.56723 -8.48543 -7.77224 -5.32924 -0.70587 0.27455 0.97259 1.27352 1.51428 1.54182 1.59443 1.90896 2.06977 2.56383 3.32411 3.35050 3.65026 3.82396 3.99067 4.06604 4.11857 4.14967 4.25406 4.39498 4.40926 4.51822 4.67461 4.70669 4.72322 4.82871 4.86028 4.91218 4.93726 4.99998 5.05790 5.18244 5.23595 5.29057 5.33377 5.37255 5.53626 5.58531 5.65430 5.73217 5.76922 6.20754 6.38915 6.53696 7.06297 7.24267 7.90261 8.49197 9.23381 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.003742 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.928558 B = 7481.008100 C = 7925.216055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 N -0.601 5.601 4 C 0.587 3.413 5 O -0.554 6.554 6 C -0.298 4.298 7 C -0.110 4.110 8 C 0.062 3.938 9 N -0.570 5.570 10 S 0.476 5.524 11 C 0.179 3.821 12 H 0.084 0.916 13 C -0.096 4.096 14 C -0.133 4.133 15 C 0.175 3.825 16 N -0.597 5.597 17 C -0.275 4.275 18 H 0.051 0.949 19 C -0.020 4.020 20 N -0.905 5.905 21 Si 0.955 3.045 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.164 3.836 26 C -0.139 4.139 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.182 0.818 33 H 0.208 0.792 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.251 0.749 41 H 0.027 0.973 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -4.778 15.744 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.037 4.037 3 N -0.332 5.332 4 C 0.375 3.625 5 O -0.433 6.433 6 C -0.431 4.431 7 C -0.146 4.146 8 C -0.129 4.129 9 N -0.399 5.399 10 S 0.633 5.367 11 C 0.077 3.923 12 H 0.103 0.897 13 C -0.134 4.134 14 C -0.172 4.172 15 C 0.052 3.948 16 N -0.320 5.320 17 C -0.405 4.405 18 H 0.069 0.931 19 C -0.218 4.218 20 N -0.549 5.549 21 Si 0.784 3.216 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.036 3.964 26 C -0.181 4.181 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.225 0.775 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.966 -6.282 15.349 17.625 hybrid contribution 1.160 1.361 -0.427 1.839 sum -4.807 -4.921 14.922 16.431 Atomic orbital electron populations 1.22372 0.93817 1.04789 1.02283 1.22102 0.96286 0.81552 1.03758 1.48412 1.63442 1.14668 1.06689 1.17097 0.77623 0.85403 0.82414 1.90773 1.48287 1.17401 1.86871 1.26907 1.13211 1.05022 0.97946 1.22355 0.99883 1.02726 0.89610 1.22539 0.98768 0.87618 1.04006 1.72083 1.24356 1.26563 1.16929 1.82119 1.47911 1.10255 0.96430 1.21056 0.93784 0.94726 0.82765 0.89748 1.21128 0.98068 0.97870 0.96346 1.20957 0.97269 1.05266 0.93744 1.19933 0.84861 0.91943 0.98072 1.44209 1.20704 1.59379 1.07703 1.19213 0.91180 1.21743 1.08368 0.93091 1.25677 0.97079 0.96902 1.02184 1.69927 1.09150 1.40091 1.35711 0.85564 0.77556 0.77658 0.80773 1.20724 1.21694 1.21306 1.20332 0.95609 0.94976 0.85514 1.23047 0.95246 1.00051 0.99759 0.92411 0.92318 0.87690 0.89776 0.88180 0.80064 0.77550 0.92708 0.92746 0.88594 0.94649 0.93604 0.96451 0.93947 0.95419 0.94927 0.91858 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.04 71.98 0.65 -2.76 16 2 C 0.09 2.04 5.68 86.38 0.49 2.53 16 3 N -0.60 -18.59 2.31 -803.71 -1.86 -20.44 16 4 C 0.59 18.66 6.79 86.57 0.59 19.24 16 5 O -0.55 -21.13 14.16 -4.14 -0.06 -21.19 16 6 C -0.30 -7.40 6.29 24.63 0.15 -7.24 16 7 C -0.11 -2.26 10.41 22.15 0.23 -2.03 16 8 C 0.06 1.09 11.14 84.87 0.95 2.04 16 9 N -0.57 -11.91 11.29 -85.47 -0.96 -12.88 16 10 S 0.48 9.25 16.39 -56.49 -0.93 8.32 16 11 C 0.18 6.75 2.31 44.70 0.10 6.86 16 12 H 0.08 3.64 6.37 -2.39 -0.02 3.63 16 13 C -0.10 -3.72 4.18 29.51 0.12 -3.59 16 14 C -0.13 -5.65 5.05 28.36 0.14 -5.51 16 15 C 0.18 8.14 5.25 83.58 0.44 8.58 16 16 N -0.60 -29.28 2.54 -707.91 -1.80 -31.07 16 17 C -0.27 -14.59 9.51 84.03 0.80 -13.79 16 18 H 0.05 2.75 7.88 -2.91 -0.02 2.73 16 19 C -0.02 -1.06 4.91 84.86 0.42 -0.64 16 20 N -0.91 -47.40 9.61 21.65 0.21 -47.19 16 21 Si 0.96 42.73 29.58 68.60 2.03 44.76 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.16 7.23 5.18 87.58 0.45 7.69 16 26 C -0.14 -5.62 5.78 31.86 0.18 -5.44 16 27 H 0.06 1.12 6.14 -2.94 -0.02 1.10 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.65 4.54 -19.81 -0.09 1.56 16 31 H 0.10 2.37 7.77 -2.39 -0.02 2.35 16 32 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.05 2.02 7.87 -2.39 -0.02 2.00 16 35 H 0.05 2.26 5.98 -2.39 -0.01 2.25 16 36 H 0.10 4.54 4.61 -2.39 -0.01 4.53 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 2.33 6.85 -2.38 -0.02 2.32 16 39 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 40 H 0.25 12.88 8.31 -92.71 -0.77 12.11 16 41 H 0.03 1.22 8.00 -2.38 -0.02 1.20 16 42 H 0.03 1.40 6.88 -2.38 -0.02 1.38 16 43 H 0.06 2.53 6.02 -2.39 -0.01 2.52 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.53 342.74 3.29 -58.24 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.93 Total: 15.52 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.72 Total: 5.93 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -4.41 Total: -111.59 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 9.25 SS G_CDS: -0.93 Total: 8.32 kcal Total: -61.53 3.29 -58.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998026297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.118 kcal (2) G-P(sol) polarization free energy of solvation -61.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds