Wall clock time and date at job start Tue Mar 31 2020 13:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47212 * 2 1 4 4 C 1.34783 * 119.99787 * 276.64891 * 3 2 1 5 5 O 1.21574 * 119.99985 * 176.49701 * 4 3 2 6 6 C 1.47688 * 119.99976 * 356.50369 * 4 3 2 7 7 C 1.39482 * 122.10513 * 186.39692 * 6 4 3 8 8 C 1.35004 * 111.68790 * 179.77941 * 7 6 4 9 9 S 1.71767 * 105.44880 * 0.43512 * 8 7 6 10 10 N 1.30607 * 122.10208 * 6.67984 * 6 4 3 11 11 C 1.46501 * 120.00481 * 96.65460 * 3 2 1 12 12 H 1.08993 * 109.20099 * 0.63777 * 11 3 2 13 13 C 1.50117 * 109.20968 * 119.99927 * 11 3 2 14 14 C 1.52527 * 105.41568 * 217.98127 * 13 11 3 15 15 C 1.46234 * 114.28127 * 270.59820 * 14 13 11 16 16 N 1.50176 * 107.53367 * 58.40075 * 15 14 13 17 17 C 1.36936 * 120.53319 * 109.57284 * 16 15 14 18 18 H 1.07997 * 119.99802 * 156.96514 * 17 16 15 19 19 C 1.38814 * 120.00097 * 336.95080 * 17 16 15 20 20 N 1.31620 * 120.00176 * 343.44254 * 19 17 16 21 21 Si 1.86803 * 119.99727 * 163.43056 * 19 17 16 22 22 H 1.48501 * 109.46787 * 180.02562 * 21 19 17 23 23 H 1.48489 * 109.47275 * 300.00476 * 21 19 17 24 24 H 1.48497 * 109.46995 * 60.00728 * 21 19 17 25 25 C 1.43430 * 118.92600 * 289.84604 * 16 15 14 26 26 C 1.54401 * 116.38891 * 91.45423 * 25 16 15 27 27 H 1.08998 * 109.46810 * 60.00528 * 1 2 3 28 28 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47437 * 300.00712 * 1 2 3 30 30 H 1.09000 * 109.47673 * 239.99740 * 2 1 3 31 31 H 1.08998 * 109.46810 * 119.99472 * 2 1 3 32 32 H 1.08001 * 124.15583 * 359.97438 * 7 6 4 33 33 H 1.08001 * 127.27693 * 180.13081 * 8 7 6 34 34 H 1.09004 * 110.25165 * 99.01379 * 13 11 3 35 35 H 1.09001 * 110.25246 * 336.95566 * 13 11 3 36 36 H 1.08994 * 108.52819 * 149.34680 * 14 13 11 37 37 H 1.09008 * 108.52135 * 31.83435 * 14 13 11 38 38 H 1.09008 * 109.84458 * 298.90092 * 15 14 13 39 39 H 1.09004 * 109.90599 * 177.94426 * 15 14 13 40 40 H 0.96996 * 120.00277 * 180.02562 * 20 19 17 41 41 H 1.09004 * 108.15708 * 213.03139 * 25 16 15 42 42 H 1.08999 * 108.16028 * 329.59463 * 25 16 15 43 43 H 1.09003 * 109.44331 * 198.43252 * 26 25 16 44 44 H 1.09001 * 109.24083 * 78.73636 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1155 2.0616 -1.1594 5 8 2.4599 3.2275 -1.1530 6 6 1.8036 1.3908 -2.4377 7 6 2.0138 2.0093 -3.6701 8 6 1.6620 1.2070 -4.6973 9 16 1.0911 -0.2415 -3.9719 10 7 1.3085 0.1831 -2.4850 11 6 2.4011 2.0229 1.2601 12 1 2.2646 1.3159 2.0784 13 6 3.8457 2.4251 1.1907 14 6 4.4083 2.1584 2.5831 15 6 4.2906 3.2870 3.5055 16 7 2.8330 3.6317 3.6150 17 6 2.1424 3.3758 4.7695 18 1 1.2443 3.9312 4.9958 19 6 2.5967 2.4024 5.6487 20 7 3.4773 1.5109 5.2459 21 14 1.9582 2.3578 7.4037 22 1 2.5948 1.2320 8.1335 23 1 2.2875 3.6366 8.0829 24 1 0.4853 2.1696 7.3900 25 6 2.1746 4.2278 2.4888 26 6 1.4970 3.2573 1.4973 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 2.4121 3.0062 -3.7881 33 1 1.7219 1.4308 -5.7522 34 1 3.9312 3.4839 0.9458 35 1 4.3702 1.8216 0.4499 36 1 5.4624 1.8983 2.4868 37 1 3.8825 1.3049 3.0113 38 1 4.8447 4.1416 3.1173 39 1 4.6795 3.0079 4.4849 40 1 3.7944 0.8305 5.8602 41 1 1.4119 4.9104 2.8635 42 1 2.9087 4.8163 1.9385 43 1 1.3263 3.7677 0.5494 44 1 0.5418 2.9318 1.9094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998046181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:29 Heat of formation + Delta-G solvation = 60.272580 kcal Electronic energy + Delta-G solvation = -26741.460255 eV Core-core repulsion = 23208.599148 eV Total energy + Delta-G solvation = -3532.861107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72943 -38.79950 -37.12023 -35.64316 -33.07922 -31.63332 -31.48772 -30.67782 -29.29692 -26.76618 -25.76272 -24.00702 -23.32436 -23.00461 -21.24939 -19.92249 -19.55930 -18.85009 -18.34306 -16.78169 -16.65104 -15.65620 -15.43521 -14.93632 -14.69750 -14.28358 -13.90447 -13.72246 -13.66595 -13.50311 -13.35532 -13.08388 -12.61858 -12.26379 -12.14356 -11.92692 -11.67721 -11.46934 -11.26410 -11.21360 -11.16733 -10.80745 -10.68097 -10.40501 -10.37019 -10.01839 -9.90841 -9.84584 -9.57953 -9.46908 -9.29463 -9.14590 -8.96030 -8.39862 -8.14862 -6.64248 -5.72973 -3.13584 0.44762 1.29588 1.69372 1.74139 3.31309 3.39570 3.41457 3.46866 3.49144 4.49299 4.55104 4.73410 5.12945 5.29536 5.38030 5.41744 5.50959 5.53877 5.62557 5.68860 5.72449 5.88682 5.98114 6.10489 6.14397 6.18444 6.26197 6.45173 6.47423 6.50549 6.56434 6.71646 6.79041 6.91463 7.00027 7.07989 7.12103 7.29809 7.37419 7.71155 7.78353 7.79951 8.02735 8.42003 8.49498 9.25768 9.93101 10.46801 11.33689 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024508 B = 0.003557 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.206452 B = 7870.291502 C = 8317.730734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.581 3.419 5 O -0.524 6.524 6 C 0.056 3.944 7 C -0.134 4.134 8 C -0.280 4.280 9 S 0.424 5.576 10 N -0.499 5.499 11 C 0.164 3.836 12 H 0.099 0.901 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.164 3.836 16 N -0.590 5.590 17 C -0.243 4.243 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.292 1.292 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.163 3.837 26 C -0.151 4.151 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.096 0.904 38 H 0.004 0.996 39 H 0.095 0.905 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 -5.248 -19.409 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.318 5.318 4 C 0.363 3.637 5 O -0.400 6.400 6 C -0.119 4.119 7 C -0.167 4.167 8 C -0.429 4.429 9 S 0.580 5.420 10 N -0.333 5.333 11 C 0.063 3.937 12 H 0.117 0.883 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.041 3.959 16 N -0.312 5.312 17 C -0.373 4.373 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.213 1.213 24 H -0.212 1.212 25 C 0.034 3.966 26 C -0.193 4.193 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.188 0.812 33 H 0.200 0.800 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.022 0.978 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.762 -6.716 -18.959 20.462 hybrid contribution 0.231 1.463 0.754 1.663 sum -3.531 -5.252 -18.204 19.273 Atomic orbital electron populations 1.22029 0.96048 1.01476 1.01635 1.21967 0.94714 0.82393 1.03331 1.48443 1.62460 1.14031 1.06849 1.17273 0.78682 0.85739 0.81994 1.90775 1.47803 1.15298 1.86171 1.21469 1.03105 0.90228 0.97051 1.21432 1.02723 1.03096 0.89427 1.27114 1.08210 1.02281 1.05286 1.80685 1.51079 1.17163 0.93119 1.73141 1.22082 1.17890 1.20225 1.21458 0.94487 0.95508 0.82207 0.88319 1.21375 0.94494 1.01563 0.98010 1.20928 0.98656 1.03568 0.93411 1.20216 0.83500 0.92282 0.99944 1.44294 1.05083 1.72258 1.09548 1.19221 1.08263 1.13840 0.95982 0.91620 1.24885 1.00030 0.95662 0.99160 1.69934 1.34825 1.16441 1.33897 0.86384 0.78236 0.76949 0.85267 1.21778 1.21266 1.21189 1.20213 0.94955 0.93181 0.88268 1.23181 0.98374 0.97430 1.00331 0.92932 0.92211 0.92732 0.88057 0.90693 0.81203 0.79954 0.91310 0.93597 0.95407 0.88559 0.97774 0.88745 0.93795 0.95082 0.95048 0.91544 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.65 37.16 0.36 -1.75 16 2 C 0.10 1.48 5.70 -4.04 -0.02 1.46 16 3 N -0.59 -10.13 2.31 -167.81 -0.39 -10.51 16 4 C 0.58 9.98 6.83 -12.40 -0.08 9.89 16 5 O -0.52 -10.25 13.81 5.30 0.07 -10.17 16 6 C 0.06 0.78 6.38 -84.06 -0.54 0.24 16 7 C -0.13 -1.52 9.98 -40.27 -0.40 -1.92 16 8 C -0.28 -2.29 11.41 29.58 0.34 -1.95 16 9 S 0.42 3.52 23.20 -107.50 -2.49 1.02 16 10 N -0.50 -6.05 5.82 24.86 0.14 -5.91 16 11 C 0.16 3.28 2.31 -68.39 -0.16 3.12 16 12 H 0.10 2.23 6.37 -51.93 -0.33 1.90 16 13 C -0.12 -2.35 4.25 -28.41 -0.12 -2.47 16 14 C -0.13 -2.79 5.00 -30.19 -0.15 -2.94 16 15 C 0.16 3.93 5.24 -5.20 -0.03 3.90 16 16 N -0.59 -14.75 2.62 -175.40 -0.46 -15.21 16 17 C -0.24 -6.58 9.65 -15.06 -0.15 -6.73 16 18 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 19 C 0.00 0.00 5.00 -17.43 -0.09 -0.09 16 20 N -0.90 -24.70 9.26 55.49 0.51 -24.18 16 21 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.16 3.65 5.13 -4.93 -0.03 3.63 16 26 C -0.15 -3.14 5.77 -25.03 -0.14 -3.29 16 27 H 0.05 0.73 6.89 -51.93 -0.36 0.37 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.40 5.27 -51.93 -0.27 1.13 16 31 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 32 H 0.17 1.86 8.00 -52.49 -0.42 1.44 16 33 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.07 1.47 6.04 -51.93 -0.31 1.16 16 35 H 0.05 0.89 7.86 -51.93 -0.41 0.49 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 2.38 5.37 -51.92 -0.28 2.10 16 38 H 0.00 0.09 8.13 -51.92 -0.42 -0.33 16 39 H 0.09 2.49 5.92 -51.93 -0.31 2.19 16 40 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 41 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 42 H 0.03 0.69 6.89 -51.93 -0.36 0.33 16 43 H 0.07 1.38 5.89 -51.93 -0.31 1.07 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -29.25 345.44 -9.90 -39.15 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.26 Total: 3.02 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.21 Total: 1.10 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.19 Total: -55.82 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.49 Total: 1.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.25 -9.90 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998046181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.425 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds