Wall clock time and date at job start Tue Mar 31 2020 13:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46692 * 2 1 4 4 C 1.34775 * 120.00043 * 276.11923 * 3 2 1 5 5 O 1.21621 * 119.99878 * 175.71298 * 4 3 2 6 6 C 1.47254 * 120.00063 * 355.71040 * 4 3 2 7 7 N 1.30562 * 125.54290 * 6.15858 * 6 4 3 8 8 C 1.30705 * 115.90640 * 179.81964 * 7 6 4 9 9 C 1.34231 * 115.78476 * 0.47369 * 8 7 6 10 10 S 1.71070 * 109.09142 * 359.75051 * 9 8 7 11 11 C 1.46496 * 120.00011 * 96.12181 * 3 2 1 12 12 H 1.09004 * 109.51135 * 0.05099 * 11 3 2 13 13 C 1.52573 * 109.49039 * 239.99788 * 11 3 2 14 14 C 1.47090 * 114.32717 * 155.02498 * 13 11 3 15 15 C 1.54859 * 110.32736 * 62.79976 * 14 13 11 16 16 N 1.44581 * 109.59755 * 288.73441 * 15 14 13 17 17 C 1.36934 * 118.64517 * 270.72071 * 16 15 14 18 18 H 1.08006 * 119.99932 * 29.95780 * 17 16 15 19 19 C 1.38816 * 120.00508 * 209.95428 * 17 16 15 20 20 N 1.31622 * 119.99356 * 9.88727 * 19 17 16 21 21 Si 1.86797 * 120.00211 * 189.88785 * 19 17 16 22 22 H 1.48501 * 109.46967 * 90.00214 * 21 19 17 23 23 H 1.48493 * 109.46850 * 209.99873 * 21 19 17 24 24 H 1.48494 * 109.47165 * 330.00134 * 21 19 17 25 25 C 1.47606 * 122.71414 * 90.72869 * 16 15 14 26 26 C 1.50877 * 109.49239 * 120.11086 * 11 3 2 27 27 H 1.08994 * 109.46562 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47066 * 299.99676 * 1 2 3 29 29 H 1.08995 * 109.47084 * 59.99740 * 1 2 3 30 30 H 1.09001 * 109.47066 * 240.00324 * 2 1 3 31 31 H 1.08999 * 109.47488 * 119.99975 * 2 1 3 32 32 H 1.07996 * 122.10392 * 180.22716 * 8 7 6 33 33 H 1.07999 * 125.45421 * 179.74062 * 9 8 7 34 34 H 1.09001 * 108.51394 * 33.76695 * 13 11 3 35 35 H 1.08998 * 108.38798 * 276.18723 * 13 11 3 36 36 H 1.09011 * 109.32552 * 302.53736 * 14 13 11 37 37 H 1.08999 * 109.19252 * 182.97844 * 14 13 11 38 38 H 1.09000 * 109.44740 * 48.77009 * 15 14 13 39 39 H 1.09001 * 109.45194 * 168.69650 * 15 14 13 40 40 H 0.96999 * 119.99347 * 180.02562 * 20 19 17 41 41 H 1.08999 * 108.94750 * 197.18331 * 25 16 15 42 42 H 1.08998 * 108.87813 * 78.50033 * 25 16 15 43 43 H 1.09003 * 109.36628 * 332.04561 * 26 11 3 44 44 H 1.09009 * 109.36886 * 91.66055 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1256 2.0581 -1.1605 5 8 2.4561 3.2285 -1.1536 6 6 1.8427 1.3805 -2.4369 7 7 1.3732 0.1689 -2.5653 8 6 1.1888 -0.2451 -3.7913 9 6 1.5162 0.6272 -4.7576 10 16 2.0897 2.0696 -4.0386 11 6 2.3900 2.0268 1.2615 12 1 2.2383 1.3297 2.0856 13 6 1.5229 3.2638 1.4751 14 6 1.3678 3.6593 2.8833 15 6 2.7404 4.0442 3.4883 16 7 3.5460 2.8557 3.6582 17 6 3.4536 2.1630 4.8357 18 1 2.5283 2.1656 5.3927 19 6 4.5493 1.4571 5.3136 20 7 5.7273 1.6076 4.7462 21 14 4.3517 0.2939 6.7618 22 1 4.0086 -1.0624 6.2640 23 1 5.6237 0.2338 7.5255 24 1 3.2656 0.7857 7.6471 25 6 4.4640 2.3584 2.6148 26 6 3.8412 2.4362 1.2090 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8900 32 1 0.8015 -1.2286 -4.0128 33 1 1.4312 0.4471 -5.8191 34 1 0.5342 3.0695 1.0592 35 1 1.9693 4.0951 0.9294 36 1 0.9455 2.8274 3.4472 37 1 0.6945 4.5143 2.9433 38 1 3.2510 4.7361 2.8184 39 1 2.5893 4.5218 4.4564 40 1 6.4928 1.1141 5.0799 41 1 4.7182 1.3210 2.8323 42 1 5.3748 2.9568 2.6320 43 1 4.3810 1.7689 0.5371 44 1 3.9153 3.4581 0.8370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998161441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:44 Heat of formation + Delta-G solvation = 52.032025 kcal Electronic energy + Delta-G solvation = -26502.982827 eV Core-core repulsion = 22969.764382 eV Total energy + Delta-G solvation = -3533.218445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60363 -39.33735 -37.32132 -35.58996 -33.40157 -31.77747 -30.72965 -30.52108 -29.41100 -26.69389 -25.70400 -23.97707 -23.35899 -23.18972 -21.48821 -20.52184 -19.40762 -18.87670 -17.94321 -16.61520 -16.52643 -15.83025 -15.66017 -15.21180 -14.87846 -14.27358 -14.12004 -13.85350 -13.78595 -13.58049 -13.43905 -13.12634 -12.84826 -12.41203 -12.26888 -11.85821 -11.83217 -11.72484 -11.34085 -11.04593 -11.02576 -10.83058 -10.81743 -10.39650 -10.24592 -10.13075 -9.95368 -9.88614 -9.64632 -9.64261 -9.47555 -9.40242 -9.14616 -8.39326 -8.30529 -6.55148 -5.72741 -3.21463 0.08065 0.96210 1.50437 2.23742 3.19505 3.21889 3.38889 3.46123 3.47230 3.96153 4.52890 4.73203 4.82079 5.09249 5.24162 5.38406 5.39678 5.49371 5.59408 5.62006 5.66733 5.71873 5.88225 6.06596 6.09255 6.13768 6.19842 6.44012 6.45088 6.49317 6.57945 6.65000 6.70350 6.79043 6.88659 7.01149 7.07276 7.18612 7.27816 7.49893 7.62563 7.79173 7.87243 8.25225 8.54793 9.30587 9.96349 10.43586 11.34076 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.003611 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.781204 B = 7752.219948 C = 8079.125925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.578 5.578 4 C 0.588 3.412 5 O -0.523 6.523 6 C -0.005 4.005 7 N -0.420 5.420 8 C 0.024 3.976 9 C -0.288 4.288 10 S 0.239 5.761 11 C 0.164 3.836 12 H 0.102 0.898 13 C -0.109 4.109 14 C -0.142 4.142 15 C 0.157 3.843 16 N -0.593 5.593 17 C -0.258 4.258 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.184 3.816 26 C -0.148 4.148 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -3.213 -18.393 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.309 5.309 4 C 0.371 3.629 5 O -0.400 6.400 6 C -0.280 4.280 7 N -0.139 5.139 8 C -0.132 4.132 9 C -0.429 4.429 10 S 0.494 5.506 11 C 0.063 3.937 12 H 0.120 0.880 13 C -0.148 4.148 14 C -0.183 4.183 15 C 0.029 3.971 16 N -0.314 5.314 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.550 5.550 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.058 3.942 26 C -0.187 4.187 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.198 0.802 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.953 -1.969 -18.214 20.390 hybrid contribution -0.544 -1.846 0.321 1.951 sum -9.496 -3.815 -17.892 20.612 Atomic orbital electron populations 1.22012 0.95969 1.01663 1.01512 1.22057 0.94692 0.81909 1.04357 1.48283 1.62272 1.14353 1.06041 1.16783 0.78753 0.85664 0.81686 1.90839 1.48127 1.14747 1.86242 1.28053 1.06694 0.94365 0.98855 1.67162 1.12573 1.10926 1.23201 1.21851 1.03053 1.02242 0.86085 1.26858 1.09780 0.99939 1.06315 1.84118 1.54617 1.13519 0.98348 1.20749 0.95054 0.95336 0.82590 0.87990 1.20651 0.98292 0.97967 0.97868 1.21445 1.00747 1.00322 0.95785 1.20714 0.89706 0.89073 0.97648 1.43667 1.48182 1.25624 1.13963 1.19215 0.95340 1.25380 0.98829 0.91826 1.25145 0.94931 1.01108 0.98053 1.70032 0.98902 1.43297 1.42737 0.86312 0.76930 0.81096 0.82540 1.21522 1.21787 1.20470 1.20973 0.90305 1.00333 0.82542 1.22453 0.94249 1.01103 1.00943 0.92002 0.92970 0.92874 0.87518 0.90542 0.80728 0.80160 0.94135 0.91466 0.92360 0.93292 0.94866 0.93718 0.93720 0.90829 0.95440 0.93007 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.76 37.16 0.36 -1.53 16 2 C 0.09 1.28 5.70 -4.04 -0.02 1.25 16 3 N -0.58 -9.38 2.27 -168.90 -0.38 -9.77 16 4 C 0.59 9.65 7.02 -12.60 -0.09 9.56 16 5 O -0.52 -9.80 14.15 5.26 0.07 -9.73 16 6 C 0.00 -0.07 7.06 -14.43 -0.10 -0.17 16 7 N -0.42 -4.99 5.82 -11.50 -0.07 -5.05 16 8 C 0.02 0.22 11.24 -19.44 -0.22 0.00 16 9 C -0.29 -2.27 11.09 29.32 0.33 -1.94 16 10 S 0.24 2.46 23.04 -107.50 -2.48 -0.01 16 11 C 0.16 3.04 2.17 -69.22 -0.15 2.89 16 12 H 0.10 2.07 7.06 -51.93 -0.37 1.70 16 13 C -0.11 -1.99 3.91 -29.79 -0.12 -2.11 16 14 C -0.14 -2.63 5.74 -28.59 -0.16 -2.79 16 15 C 0.16 3.35 5.65 -4.09 -0.02 3.32 16 16 N -0.59 -14.58 2.26 -172.08 -0.39 -14.97 16 17 C -0.26 -6.91 9.42 -15.06 -0.14 -7.05 16 18 H 0.06 1.69 7.85 -52.48 -0.41 1.28 16 19 C 0.01 0.17 5.00 -17.43 -0.09 0.08 16 20 N -0.91 -25.99 10.90 55.49 0.60 -25.39 16 21 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.18 4.43 4.64 -2.94 -0.01 4.41 16 26 C -0.15 -3.00 4.36 -27.30 -0.12 -3.12 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.68 7.12 -51.93 -0.37 0.31 16 30 H 0.11 1.41 5.28 -51.93 -0.27 1.14 16 31 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 32 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 36 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 1.95 6.42 -51.93 -0.33 1.61 16 42 H 0.03 0.73 8.00 -51.93 -0.42 0.31 16 43 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 44 H 0.06 1.27 6.74 -51.92 -0.35 0.92 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -30.03 353.62 -9.48 -39.51 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.59 Total: 0.78 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.56 Total: 2.82 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.24 Total: -55.18 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.48 Total: -0.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.03 -9.48 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998161441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.544 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds