Wall clock time and date at job start Tue Mar 31 2020 13:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46692 * 2 1 4 4 C 1.34775 * 120.00043 * 276.11923 * 3 2 1 5 5 O 1.21621 * 119.99878 * 175.71298 * 4 3 2 6 6 C 1.47254 * 120.00063 * 355.71040 * 4 3 2 7 7 N 1.30562 * 125.54290 * 6.15858 * 6 4 3 8 8 C 1.30705 * 115.90640 * 179.81964 * 7 6 4 9 9 C 1.34231 * 115.78476 * 0.47369 * 8 7 6 10 10 S 1.71070 * 109.09142 * 359.75051 * 9 8 7 11 11 C 1.46496 * 120.00011 * 96.12181 * 3 2 1 12 12 H 1.09004 * 109.51135 * 0.05099 * 11 3 2 13 13 C 1.52573 * 109.49039 * 239.99788 * 11 3 2 14 14 C 1.47090 * 114.32717 * 155.02498 * 13 11 3 15 15 C 1.54859 * 110.32736 * 62.79976 * 14 13 11 16 16 N 1.44581 * 109.59755 * 288.73441 * 15 14 13 17 17 C 1.36934 * 118.64517 * 270.72071 * 16 15 14 18 18 H 1.08006 * 119.99932 * 29.95780 * 17 16 15 19 19 C 1.38816 * 120.00508 * 209.95428 * 17 16 15 20 20 N 1.31622 * 119.99356 * 9.88727 * 19 17 16 21 21 Si 1.86797 * 120.00211 * 189.88785 * 19 17 16 22 22 H 1.48501 * 109.46967 * 90.00214 * 21 19 17 23 23 H 1.48493 * 109.46850 * 209.99873 * 21 19 17 24 24 H 1.48494 * 109.47165 * 330.00134 * 21 19 17 25 25 C 1.47606 * 122.71414 * 90.72869 * 16 15 14 26 26 C 1.50877 * 109.49239 * 120.11086 * 11 3 2 27 27 H 1.08994 * 109.46562 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47066 * 299.99676 * 1 2 3 29 29 H 1.08995 * 109.47084 * 59.99740 * 1 2 3 30 30 H 1.09001 * 109.47066 * 240.00324 * 2 1 3 31 31 H 1.08999 * 109.47488 * 119.99975 * 2 1 3 32 32 H 1.07996 * 122.10392 * 180.22716 * 8 7 6 33 33 H 1.07999 * 125.45421 * 179.74062 * 9 8 7 34 34 H 1.09001 * 108.51394 * 33.76695 * 13 11 3 35 35 H 1.08998 * 108.38798 * 276.18723 * 13 11 3 36 36 H 1.09011 * 109.32552 * 302.53736 * 14 13 11 37 37 H 1.08999 * 109.19252 * 182.97844 * 14 13 11 38 38 H 1.09000 * 109.44740 * 48.77009 * 15 14 13 39 39 H 1.09001 * 109.45194 * 168.69650 * 15 14 13 40 40 H 0.96999 * 119.99347 * 180.02562 * 20 19 17 41 41 H 1.08999 * 108.94750 * 197.18331 * 25 16 15 42 42 H 1.08998 * 108.87813 * 78.50033 * 25 16 15 43 43 H 1.09003 * 109.36628 * 332.04561 * 26 11 3 44 44 H 1.09009 * 109.36886 * 91.66055 * 26 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1256 2.0581 -1.1605 5 8 2.4561 3.2285 -1.1536 6 6 1.8427 1.3805 -2.4369 7 7 1.3732 0.1689 -2.5653 8 6 1.1888 -0.2451 -3.7913 9 6 1.5162 0.6272 -4.7576 10 16 2.0897 2.0696 -4.0386 11 6 2.3900 2.0268 1.2615 12 1 2.2383 1.3297 2.0856 13 6 1.5229 3.2638 1.4751 14 6 1.3678 3.6593 2.8833 15 6 2.7404 4.0442 3.4883 16 7 3.5460 2.8557 3.6582 17 6 3.4536 2.1630 4.8357 18 1 2.5283 2.1656 5.3927 19 6 4.5493 1.4571 5.3136 20 7 5.7273 1.6076 4.7462 21 14 4.3517 0.2939 6.7618 22 1 4.0086 -1.0624 6.2640 23 1 5.6237 0.2338 7.5255 24 1 3.2656 0.7857 7.6471 25 6 4.4640 2.3584 2.6148 26 6 3.8412 2.4362 1.2090 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8900 32 1 0.8015 -1.2286 -4.0128 33 1 1.4312 0.4471 -5.8191 34 1 0.5342 3.0695 1.0592 35 1 1.9693 4.0951 0.9294 36 1 0.9455 2.8274 3.4472 37 1 0.6945 4.5143 2.9433 38 1 3.2510 4.7361 2.8184 39 1 2.5893 4.5218 4.4564 40 1 6.4928 1.1141 5.0799 41 1 4.7182 1.3210 2.8323 42 1 5.3748 2.9568 2.6320 43 1 4.3810 1.7689 0.5371 44 1 3.9153 3.4581 0.8370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998161441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:44 Heat of formation + Delta-G solvation = 35.980555 kcal Electronic energy + Delta-G solvation = -26503.678871 eV Core-core repulsion = 22969.764382 eV Total energy + Delta-G solvation = -3533.914489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74736 -40.36447 -38.91194 -36.96787 -35.14042 -33.33904 -32.59002 -31.46448 -30.69667 -28.03612 -27.19410 -25.54203 -25.05692 -24.46197 -22.49601 -21.84763 -21.18526 -20.01287 -18.96010 -18.52095 -17.65485 -17.24005 -16.92568 -16.50835 -16.14532 -15.99258 -15.60608 -15.14714 -15.02249 -14.84991 -14.70086 -14.44660 -14.18458 -13.94165 -13.76349 -13.46666 -13.19609 -12.99023 -12.78375 -12.70974 -12.53510 -12.42572 -12.08060 -12.07522 -11.97047 -11.77863 -11.65539 -11.37263 -11.33630 -11.07279 -10.67277 -10.48615 -10.42901 -9.98263 -9.60623 -8.58541 -7.81551 -5.33550 -0.76212 0.13340 0.76759 1.37636 1.49265 1.49766 1.58910 2.01116 2.15565 2.54030 3.00571 3.32880 3.65923 3.74716 3.96995 4.05092 4.14456 4.31410 4.38955 4.39867 4.43527 4.48398 4.51630 4.64115 4.72126 4.77884 4.89844 4.92844 5.03309 5.08650 5.12418 5.18502 5.20616 5.23543 5.34015 5.44305 5.48756 5.57873 5.67291 5.73151 5.77022 6.34955 6.46077 6.50666 7.02877 7.22114 7.95840 8.38868 9.23617 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.003611 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.781204 B = 7752.219948 C = 8079.125925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 N -0.583 5.583 4 C 0.586 3.414 5 O -0.558 6.558 6 C -0.054 4.054 7 N -0.421 5.421 8 C 0.009 3.991 9 C -0.254 4.254 10 S 0.251 5.749 11 C 0.174 3.826 12 H 0.084 0.916 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.046 4.046 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.269 1.269 25 C 0.200 3.800 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.207 0.793 33 H 0.221 0.779 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.248 0.752 41 H 0.045 0.955 42 H -0.006 1.006 43 H 0.052 0.948 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 -4.498 -20.368 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 N -0.314 5.314 4 C 0.371 3.629 5 O -0.436 6.436 6 C -0.326 4.326 7 N -0.140 5.140 8 C -0.147 4.147 9 C -0.394 4.394 10 S 0.505 5.495 11 C 0.071 3.929 12 H 0.102 0.898 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.584 5.584 21 Si 0.794 3.206 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.193 1.193 25 C 0.075 3.925 26 C -0.167 4.167 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.147 -3.256 -20.190 23.291 hybrid contribution 0.114 -1.441 0.761 1.634 sum -11.032 -4.698 -19.429 22.831 Atomic orbital electron populations 1.21912 0.94592 1.02808 1.00733 1.22195 0.95747 0.80558 1.04448 1.48253 1.62625 1.15187 1.05364 1.17139 0.77735 0.85396 0.82602 1.90804 1.49675 1.16188 1.86981 1.27417 1.10797 0.95682 0.98711 1.67071 1.11624 1.10265 1.25084 1.22342 1.03460 1.03733 0.85204 1.27363 1.06251 0.97841 1.07991 1.84115 1.54069 1.14627 0.96697 1.20386 0.93675 0.95240 0.83557 0.89802 1.20538 0.98568 0.97232 0.97465 1.21277 0.99013 1.01085 0.95408 1.20856 0.90781 0.88004 0.97794 1.43838 1.48508 1.26627 1.13677 1.19513 0.95360 1.25176 0.99267 0.91471 1.25877 0.94650 1.02884 1.00710 1.70210 0.99515 1.44385 1.44250 0.85294 0.76639 0.79137 0.79535 1.21067 1.22432 1.19335 1.20627 0.89594 0.97758 0.84558 1.22174 0.95694 1.00699 0.98159 0.89852 0.94048 0.93199 0.86641 0.91180 0.77624 0.76269 0.93007 0.92573 0.93013 0.90538 0.94948 0.93948 0.94285 0.93630 0.98840 0.92951 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.76 71.98 0.70 -2.61 16 2 C 0.09 2.49 5.70 86.38 0.49 2.99 16 3 N -0.58 -19.05 2.27 -806.53 -1.83 -20.88 16 4 C 0.59 19.29 7.02 86.61 0.61 19.89 16 5 O -0.56 -21.25 14.15 -4.10 -0.06 -21.31 16 6 C -0.05 -1.39 7.06 87.25 0.62 -0.77 16 7 N -0.42 -9.10 5.82 -190.31 -1.11 -10.21 16 8 C 0.01 0.12 11.24 83.95 0.94 1.07 16 9 C -0.25 -2.93 11.09 66.90 0.74 -2.19 16 10 S 0.25 4.66 23.04 -56.49 -1.30 3.36 16 11 C 0.17 6.58 2.17 44.16 0.10 6.68 16 12 H 0.08 3.49 7.06 -2.39 -0.02 3.47 16 13 C -0.10 -3.61 3.91 28.61 0.11 -3.49 16 14 C -0.13 -4.62 5.74 29.39 0.17 -4.45 16 15 C 0.15 6.58 5.65 87.37 0.49 7.07 16 16 N -0.60 -30.59 2.26 -698.35 -1.58 -32.17 16 17 C -0.26 -14.31 9.42 84.03 0.79 -13.52 16 18 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 19 C -0.05 -2.56 5.00 84.86 0.42 -2.13 16 20 N -0.94 -55.74 10.90 21.65 0.24 -55.50 16 21 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 C 0.20 10.14 4.64 86.49 0.40 10.55 16 26 C -0.13 -5.40 4.36 30.23 0.13 -5.27 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.20 7.12 -2.39 -0.02 1.18 16 30 H 0.12 2.93 5.28 -2.39 -0.01 2.92 16 31 H 0.07 1.95 7.79 -2.39 -0.02 1.93 16 32 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.22 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 35 H 0.06 2.18 6.21 -2.39 -0.01 2.17 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 39 H 0.04 1.83 7.99 -2.39 -0.02 1.81 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.05 2.54 6.42 -2.39 -0.02 2.53 16 42 H -0.01 -0.37 8.00 -2.39 -0.02 -0.39 16 43 H 0.05 2.17 7.97 -2.39 -0.02 2.15 16 44 H 0.05 2.33 6.74 -2.38 -0.02 2.31 16 Total: -1.00 -67.37 353.62 4.10 -63.27 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.00 Total: 12.82 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.72 Total: 13.80 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -4.29 Total: -118.76 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Total: -67.37 4.10 -63.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998161441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.246 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds