Wall clock time and date at job start Tue Mar 31 2020 13:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46627 * 2 1 4 4 C 1.34778 * 120.00046 * 274.26248 * 3 2 1 5 5 O 1.21622 * 120.00295 * 185.16469 * 4 3 2 6 6 C 1.47260 * 119.99650 * 5.16019 * 4 3 2 7 7 N 1.30553 * 125.54488 * 5.56033 * 6 4 3 8 8 C 1.30696 * 115.90968 * 179.81945 * 7 6 4 9 9 C 1.34240 * 115.78309 * 0.47239 * 8 7 6 10 10 S 1.71066 * 109.08705 * 359.75060 * 9 8 7 11 11 C 1.46500 * 120.00346 * 94.26669 * 3 2 1 12 12 H 1.09000 * 110.21417 * 1.93384 * 11 3 2 13 13 C 1.50133 * 110.25287 * 124.01342 * 11 3 2 14 14 C 1.54832 * 110.82047 * 216.66031 * 13 11 3 15 15 C 1.54903 * 110.13817 * 321.13154 * 14 13 11 16 16 N 1.43428 * 116.08097 * 318.63924 * 15 14 13 17 17 C 1.36935 * 120.54309 * 271.58879 * 16 15 14 18 18 H 1.08002 * 119.99859 * 337.02612 * 17 16 15 19 19 C 1.38814 * 120.00432 * 157.02030 * 17 16 15 20 20 N 1.31616 * 119.99799 * 339.01295 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 159.00728 * 19 17 16 22 22 H 1.48501 * 109.46891 * 60.00342 * 21 19 17 23 23 H 1.48500 * 109.47067 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47221 * 300.00597 * 21 19 17 25 25 C 1.50177 * 118.92577 * 91.57018 * 16 15 14 26 26 C 1.46237 * 107.52997 * 289.59058 * 25 16 15 27 27 H 1.08995 * 109.47469 * 60.00554 * 1 2 3 28 28 H 1.09011 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47615 * 300.00300 * 1 2 3 30 30 H 1.08992 * 109.47384 * 239.99346 * 2 1 3 31 31 H 1.09000 * 109.47023 * 119.99405 * 2 1 3 32 32 H 1.08002 * 122.11295 * 180.22128 * 8 7 6 33 33 H 1.07996 * 125.45084 * 179.74317 * 9 8 7 34 34 H 1.09003 * 109.20797 * 337.00774 * 13 11 3 35 35 H 1.09001 * 109.20436 * 96.30788 * 13 11 3 36 36 H 1.08997 * 109.36022 * 200.92981 * 14 13 11 37 37 H 1.08997 * 109.36288 * 81.33508 * 14 13 11 38 38 H 1.09008 * 108.16189 * 196.92659 * 15 14 13 39 39 H 1.09003 * 108.16149 * 80.36377 * 15 14 13 40 40 H 0.96998 * 119.99766 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.84348 * 49.09358 * 25 16 15 42 42 H 1.08998 * 109.84999 * 170.01585 * 25 16 15 43 43 H 1.09002 * 108.52420 * 179.64921 * 26 25 16 44 44 H 1.08999 * 108.52278 * 297.32013 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1610 2.0455 -1.1640 5 8 2.6540 3.1573 -1.1732 6 6 1.7200 1.4251 -2.4246 7 7 1.0873 0.2880 -2.5303 8 6 0.7818 -0.0847 -3.7451 9 6 1.1679 0.7469 -4.7256 10 16 1.9671 2.0926 -4.0353 11 6 2.3513 2.0405 1.2652 12 1 2.2102 1.3511 2.0976 13 6 3.7670 2.5394 1.2342 14 6 4.4363 2.3825 2.6216 15 6 3.4219 2.7158 3.7438 16 7 2.5730 3.8482 3.5106 17 6 2.9722 5.1049 3.8798 18 1 3.7160 5.2299 4.6529 19 6 2.4210 6.2183 3.2606 20 7 1.8525 6.1003 2.0794 21 14 2.4861 7.8839 4.1036 22 1 3.9022 8.2665 4.3351 23 1 1.8327 8.9011 3.2412 24 1 1.7748 7.8082 5.4050 25 6 1.2394 3.6333 2.8544 26 6 1.4876 3.2830 1.4565 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8900 32 1 0.2555 -1.0058 -3.9478 33 1 1.0009 0.5910 -5.7811 34 1 4.3321 1.9693 0.4968 35 1 3.7700 3.5921 0.9515 36 1 5.2873 3.0599 2.6909 37 1 4.7833 1.3562 2.7414 38 1 3.9791 2.8928 4.6639 39 1 2.7884 1.8426 3.8995 40 1 1.4670 6.8782 1.6469 41 1 0.7094 2.8207 3.3510 42 1 0.6487 4.5478 2.9085 43 1 0.5287 3.1170 0.9655 44 1 1.9827 4.1242 0.9714 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998161447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:48 Heat of formation + Delta-G solvation = 64.788605 kcal Electronic energy + Delta-G solvation = -26778.231699 eV Core-core repulsion = 23245.566421 eV Total energy + Delta-G solvation = -3532.665278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48863 -39.23745 -37.26522 -35.47594 -33.09832 -31.59228 -30.59934 -30.44813 -29.42455 -26.63281 -25.64686 -23.96548 -23.31272 -22.94287 -21.42590 -20.44507 -19.44010 -18.63378 -17.78802 -16.64387 -16.48350 -15.62018 -15.39852 -15.11911 -14.80882 -13.99753 -13.88605 -13.80874 -13.67845 -13.66013 -13.34575 -13.13391 -12.89776 -12.23537 -11.99581 -11.80273 -11.60794 -11.56428 -11.34517 -11.11453 -10.92498 -10.67312 -10.57763 -10.37850 -10.17811 -9.91298 -9.83193 -9.71611 -9.68947 -9.42930 -9.25556 -9.10982 -9.02813 -8.40651 -8.10485 -6.63061 -5.68021 -3.07094 0.19269 1.07812 1.61901 2.35024 3.28146 3.40227 3.45757 3.52067 3.53191 4.06987 4.59825 4.83961 4.90147 5.18590 5.24463 5.44198 5.47175 5.55664 5.65078 5.69607 5.78747 5.87874 5.95695 6.03062 6.16678 6.21609 6.31169 6.38540 6.52706 6.56210 6.63758 6.76292 6.96056 6.97525 7.08869 7.14704 7.29816 7.36458 7.41333 7.60158 7.80276 7.85995 8.17085 8.44936 8.52070 9.28374 9.96283 10.49194 11.38660 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.004012 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.869652 B = 6978.248486 C = 7664.867402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 N -0.581 5.581 4 C 0.585 3.415 5 O -0.504 6.504 6 C -0.004 4.004 7 N -0.422 5.422 8 C 0.023 3.977 9 C -0.291 4.291 10 S 0.242 5.758 11 C 0.155 3.845 12 H 0.083 0.917 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.157 3.843 16 N -0.587 5.587 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.171 3.829 26 C -0.138 4.138 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.004 0.996 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -14.876 -11.829 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.313 5.313 4 C 0.367 3.633 5 O -0.377 6.377 6 C -0.279 4.279 7 N -0.140 5.140 8 C -0.134 4.134 9 C -0.432 4.432 10 S 0.497 5.503 11 C 0.053 3.947 12 H 0.101 0.899 13 C -0.145 4.145 14 C -0.185 4.185 15 C 0.027 3.973 16 N -0.308 5.308 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.213 1.213 25 C 0.047 3.953 26 C -0.177 4.177 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.191 0.809 33 H 0.197 0.803 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.886 -13.474 -11.799 18.009 hybrid contribution -0.578 -0.184 -0.185 0.634 sum -2.464 -13.658 -11.984 18.336 Atomic orbital electron populations 1.22063 0.95823 1.01408 1.02077 1.21739 0.95001 0.81933 1.02775 1.48116 1.63534 1.13995 1.05681 1.16775 0.79894 0.85066 0.81559 1.90947 1.43113 1.18166 1.85521 1.28096 1.05008 0.95878 0.98879 1.67225 1.11127 1.11819 1.23829 1.21810 1.03154 1.02276 0.86149 1.26859 1.08833 1.01302 1.06218 1.84196 1.48059 1.19188 0.98899 1.20696 0.96878 0.95101 0.81979 0.89891 1.21730 0.93491 1.03266 0.96034 1.22904 0.99977 0.98550 0.97100 1.20415 0.91819 0.90224 0.94803 1.44246 1.13107 1.03022 1.70426 1.19123 1.22603 0.82461 1.14129 0.91563 1.24886 1.01774 0.97519 0.95198 1.69997 1.42199 1.29136 1.12318 0.86455 0.77643 0.84240 0.78941 1.21117 1.21812 1.21296 1.20092 0.87020 0.98623 0.89603 1.21404 0.97711 0.97823 1.00806 0.91942 0.92399 0.93067 0.89057 0.91243 0.80869 0.80271 0.94667 0.89312 0.92829 0.94065 0.94967 0.95646 0.93695 0.97806 0.89183 0.95660 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.63 37.16 0.36 -1.61 16 2 C 0.11 1.46 5.68 -4.04 -0.02 1.43 16 3 N -0.58 -9.89 2.32 -169.35 -0.39 -10.28 16 4 C 0.58 10.64 6.94 -12.59 -0.09 10.55 16 5 O -0.50 -11.00 14.25 5.26 0.07 -10.92 16 6 C 0.00 -0.05 6.99 -14.43 -0.10 -0.16 16 7 N -0.42 -5.31 5.30 -11.50 -0.06 -5.37 16 8 C 0.02 0.22 11.24 -19.44 -0.22 0.00 16 9 C -0.29 -2.57 11.09 29.32 0.33 -2.24 16 10 S 0.24 2.84 23.04 -107.50 -2.48 0.36 16 11 C 0.15 2.98 2.38 -69.60 -0.17 2.82 16 12 H 0.08 1.51 5.93 -51.93 -0.31 1.20 16 13 C -0.11 -2.22 4.00 -27.19 -0.11 -2.33 16 14 C -0.14 -2.81 6.41 -24.76 -0.16 -2.96 16 15 C 0.16 3.30 5.17 -4.66 -0.02 3.27 16 16 N -0.59 -14.53 2.60 -175.07 -0.46 -14.99 16 17 C -0.25 -6.94 9.62 -15.06 -0.14 -7.08 16 18 H 0.07 1.80 7.90 -52.49 -0.41 1.39 16 19 C 0.00 0.14 4.88 -17.43 -0.08 0.05 16 20 N -0.89 -25.50 9.50 55.49 0.53 -24.98 16 21 Si 0.90 21.93 29.60 -169.99 -5.03 16.89 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.17 4.05 5.24 -5.20 -0.03 4.03 16 26 C -0.14 -3.12 3.87 -30.19 -0.12 -3.24 16 27 H 0.06 0.87 6.39 -51.93 -0.33 0.53 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.18 5.81 -51.93 -0.30 0.87 16 31 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 32 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.03 0.70 7.77 -51.93 -0.40 0.29 16 35 H 0.09 2.26 6.30 -51.93 -0.33 1.93 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.67 7.99 -51.92 -0.41 0.26 16 39 H 0.03 0.49 6.90 -51.93 -0.36 0.13 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.00 0.08 8.12 -51.93 -0.42 -0.34 16 42 H 0.09 2.40 6.08 -51.93 -0.32 2.08 16 43 H 0.02 0.56 8.02 -51.93 -0.42 0.14 16 44 H 0.12 3.24 4.55 -51.93 -0.24 3.00 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -30.48 347.65 -9.48 -39.96 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.33 Total: 1.55 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.58 Total: 2.53 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.38 Total: -55.62 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.48 Total: 0.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.48 -9.48 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998161447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.753 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds