Wall clock time and date at job start Tue Mar 31 2020 14:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00296 * 2 1 4 4 H 1.48489 * 109.47098 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.46727 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47119 * 119.99628 * 3 2 1 7 7 C 1.38814 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00005 * 197.36486 * 7 2 1 9 9 N 1.36935 * 119.99907 * 17.36827 * 7 2 1 10 10 C 1.46928 * 120.63106 * 207.68662 * 9 7 2 11 11 C 1.53190 * 108.77457 * 233.58659 * 10 9 7 12 12 C 1.53038 * 109.31456 * 305.36336 * 11 10 9 13 13 C 1.52997 * 109.46349 * 181.38534 * 12 11 10 14 14 N 1.46498 * 115.54756 * 325.58443 * 13 12 11 15 15 C 1.34786 * 119.99898 * 179.91304 * 14 13 12 16 16 O 1.21284 * 119.99421 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00018 * 180.02562 * 15 14 13 18 18 H 1.08999 * 115.55149 * 34.32483 * 17 15 14 19 19 C 1.53072 * 117.53014 * 248.61409 * 17 15 14 20 20 C 1.53003 * 59.98522 * 252.53298 * 19 17 15 21 21 H 1.09000 * 117.50428 * 107.49950 * 20 19 17 22 22 N 1.46497 * 117.49753 * 252.50500 * 20 19 17 23 23 O 1.21805 * 120.00028 * 188.74660 * 22 20 19 24 24 O 1.21805 * 120.00390 * 8.73929 * 22 20 19 25 25 C 1.53003 * 117.51706 * 111.28463 * 13 12 11 26 26 C 1.52995 * 60.00130 * 107.48434 * 25 13 12 27 27 C 1.53045 * 109.53921 * 61.36358 * 12 11 10 28 28 C 1.46929 * 120.63153 * 27.66040 * 9 7 2 29 29 H 0.96999 * 119.99557 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58631 * 113.79656 * 10 9 7 31 31 H 1.09004 * 109.58453 * 353.37144 * 10 9 7 32 32 H 1.09001 * 109.49670 * 185.41209 * 11 10 9 33 33 H 1.08999 * 109.50071 * 65.31534 * 11 10 9 34 34 H 1.09003 * 109.45768 * 301.36318 * 12 11 10 35 35 H 0.96994 * 120.00296 * 359.91084 * 14 13 12 36 36 H 1.08999 * 117.49617 * 145.04494 * 19 17 15 37 37 H 1.09001 * 117.51747 * 0.02562 * 19 17 15 38 38 H 1.08999 * 117.49740 * 214.97612 * 25 13 12 39 39 H 1.09003 * 117.49760 * 359.97438 * 25 13 12 40 40 H 1.09005 * 117.49943 * 252.51583 * 26 25 13 41 41 H 1.08997 * 117.50388 * 107.49246 * 26 25 13 42 42 H 1.09004 * 109.49379 * 58.58885 * 27 12 11 43 43 H 1.08996 * 109.50045 * 178.68761 * 27 12 11 44 44 H 1.08998 * 109.58598 * 246.20006 * 28 9 7 45 45 H 1.08999 * 109.58498 * 6.62791 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2797 9 7 1.3723 -2.3612 -0.3529 10 6 1.8192 -3.6547 0.1818 11 6 2.0741 -4.6103 -0.9880 12 6 0.8184 -4.6903 -1.8592 13 6 1.0575 -5.6704 -3.0094 14 7 2.4232 -5.7024 -3.5387 15 6 2.7339 -6.5350 -4.5520 16 8 1.8829 -7.2581 -5.0253 17 6 4.1388 -6.5683 -5.0962 18 1 4.9302 -6.4052 -4.3647 19 6 4.3624 -6.0291 -6.5112 20 6 4.4280 -7.5347 -6.2465 21 1 3.6021 -8.1461 -6.6099 22 7 5.7474 -8.1704 -6.2802 23 8 5.8400 -9.3841 -6.2352 24 8 6.7520 -7.4854 -6.3532 25 6 0.2758 -6.9856 -2.9914 26 6 -0.0888 -5.8927 -3.9981 27 6 0.5005 -3.3052 -2.4273 28 6 0.2277 -2.3348 -1.2738 29 1 -0.4849 0.8401 0.0004 30 1 1.0468 -4.0685 0.8301 31 1 2.7400 -3.5172 0.7487 32 1 2.3133 -5.6014 -0.6026 33 1 2.9079 -4.2405 -1.5848 34 1 -0.0208 -5.0363 -1.2556 35 1 3.1037 -5.1243 -3.1599 36 1 5.3009 -5.5117 -6.7101 37 1 3.4933 -5.6498 -7.0488 38 1 0.7777 -7.8746 -3.3734 39 1 -0.4087 -7.1529 -2.1598 40 1 -1.0134 -5.3407 -3.8289 41 1 0.1731 -6.0625 -5.0424 42 1 1.3492 -2.9478 -3.0106 43 1 -0.3803 -3.3675 -3.0663 44 1 -0.6744 -2.6411 -0.7442 45 1 0.0984 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000153272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:29 Heat of formation + Delta-G solvation = 35.576231 kcal Electronic energy + Delta-G solvation = -27898.971872 eV Core-core repulsion = 23922.286979 eV Total energy + Delta-G solvation = -3976.684892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.65922 -40.92448 -38.74423 -37.26601 -36.65707 -35.89531 -33.30253 -32.88453 -30.45518 -29.85200 -28.30612 -25.85377 -25.08040 -22.95968 -22.73778 -22.57450 -21.79662 -20.93957 -20.08574 -19.46551 -19.04642 -18.71993 -18.05723 -17.41859 -16.87159 -15.80077 -15.44935 -15.39802 -14.89103 -14.21727 -14.04158 -13.75328 -13.68144 -13.60130 -13.20405 -13.06754 -12.92511 -12.42088 -12.11034 -11.88995 -11.82288 -11.62813 -11.48808 -11.43267 -11.41033 -11.17709 -11.08016 -10.82407 -10.77942 -10.53039 -10.40677 -10.23344 -10.08769 -9.99666 -9.66782 -9.49186 -8.72507 -8.52624 -6.76111 -5.86421 -3.28852 0.07214 1.14148 1.82131 2.54067 2.75642 3.28531 3.32634 3.39163 3.39546 3.60274 3.92634 3.96679 4.19566 4.42833 4.60978 4.66480 4.86624 4.89237 5.00997 5.04773 5.21589 5.32021 5.45943 5.56565 5.60299 5.75811 5.80569 5.95708 5.98030 5.99170 6.18499 6.29176 6.30688 6.38161 6.52536 6.57301 6.61973 6.69695 6.83477 7.15873 7.25691 7.27916 7.57228 7.71791 7.76824 8.37261 9.13661 9.77040 10.33289 11.22048 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002945 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.073943 B = 9504.419103 C =10522.369752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.042 4.042 13 C 0.106 3.894 14 N -0.673 5.673 15 C 0.542 3.458 16 O -0.530 6.530 17 C -0.146 4.146 18 H 0.146 0.854 19 C -0.106 4.106 20 C -0.061 4.061 21 H 0.186 0.814 22 N 0.011 4.989 23 O -0.152 6.152 24 O -0.161 6.161 25 C -0.178 4.178 26 C -0.173 4.173 27 C -0.132 4.132 28 C 0.170 3.830 29 H 0.255 0.745 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -12.584 -11.050 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.167 4.167 12 C -0.061 4.061 13 C 0.019 3.981 14 N -0.322 5.322 15 C 0.326 3.674 16 O -0.407 6.407 17 C -0.169 4.169 18 H 0.164 0.836 19 C -0.143 4.143 20 C -0.161 4.161 21 H 0.203 0.797 22 N 0.532 4.468 23 O -0.371 6.371 24 O -0.378 6.378 25 C -0.217 4.217 26 C -0.212 4.212 27 C -0.171 4.171 28 C 0.044 3.956 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.487 -12.577 -11.325 17.280 hybrid contribution 1.000 0.867 0.198 1.338 sum 4.487 -11.710 -11.127 16.765 Atomic orbital electron populations 1.70019 1.05278 1.25699 1.53640 1.25035 0.95266 0.98432 1.00807 0.86381 0.78946 0.83366 0.78145 1.21031 1.21615 1.20861 1.19133 0.92693 0.84875 1.41813 0.91730 1.44063 1.35873 1.01332 1.50210 1.20880 0.97781 0.86920 0.92554 1.22044 0.96470 0.99341 0.98802 1.20811 0.99116 0.93889 0.92301 1.21061 0.79190 0.99504 0.98357 1.45278 1.12083 1.40706 1.34171 1.19100 0.87455 0.80612 0.80214 1.90719 1.48814 1.41702 1.59495 1.22821 0.99407 1.00547 0.94083 0.83585 1.23692 1.07245 0.89141 0.94259 1.25002 0.85910 0.95965 1.09212 0.79704 1.43808 1.03811 1.01415 0.97729 1.94592 1.93879 0.96256 1.52406 1.94557 1.27509 1.63195 1.52562 1.23457 1.02686 0.93844 1.01672 1.23349 0.98430 1.01994 0.97382 1.22253 1.00309 0.94608 0.99974 1.20795 0.88614 0.98332 0.87838 0.93522 0.96355 0.92689 0.92834 0.92735 0.90071 0.75139 0.84154 0.84667 0.87779 0.88735 0.88509 0.87809 0.92775 0.93011 0.96422 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.19 55.49 0.62 -24.66 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.67 9.59 -15.06 -0.14 -6.81 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -13.80 2.99 -172.32 -0.52 -14.32 16 10 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 11 C -0.13 -1.89 4.83 -26.61 -0.13 -2.01 16 12 C -0.04 -0.61 2.28 -90.58 -0.21 -0.82 16 13 C 0.11 1.33 2.48 -131.82 -0.33 1.01 16 14 N -0.67 -7.33 5.39 -47.61 -0.26 -7.59 16 15 C 0.54 5.67 7.32 -10.98 -0.08 5.59 16 16 O -0.53 -6.83 11.74 5.55 0.07 -6.77 16 17 C -0.15 -1.14 6.08 -91.73 -0.56 -1.69 16 18 H 0.15 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.11 -0.64 9.73 -26.69 -0.26 -0.90 16 20 C -0.06 -0.51 6.42 -67.93 -0.44 -0.94 16 21 H 0.19 1.51 7.67 -51.93 -0.40 1.11 16 22 N 0.01 0.11 4.33 -4.89 -0.02 0.09 16 23 O -0.15 -1.89 19.24 -29.46 -0.57 -2.46 16 24 O -0.16 -1.81 18.28 -29.46 -0.54 -2.35 16 25 C -0.18 -2.23 9.36 -26.73 -0.25 -2.48 16 26 C -0.17 -2.20 8.91 -26.73 -0.24 -2.44 16 27 C -0.13 -2.24 5.22 -26.61 -0.14 -2.38 16 28 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 34 H 0.08 1.22 7.90 -51.93 -0.41 0.81 16 35 H 0.41 4.04 6.66 -40.82 -0.27 3.77 16 36 H 0.14 0.70 7.63 -51.93 -0.40 0.30 16 37 H 0.14 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.41 6.37 -51.93 -0.33 1.08 16 39 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 40 H 0.10 1.19 7.60 -51.93 -0.39 0.79 16 41 H 0.10 1.39 6.38 -51.93 -0.33 1.06 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.81 7.24 -51.93 -0.38 0.44 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -30.13 364.04 -10.13 -40.26 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.48 Total: 3.81 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.90 Total: -7.38 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.17 Total: -46.47 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.04 Total: -11.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.13 -10.13 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000153272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.839 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds