Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99958 * 2 1 4 4 C 1.46903 * 111.00248 * 123.95853 * 2 1 3 5 5 C 1.50694 * 109.47120 * 164.18262 * 4 2 1 6 6 C 1.37478 * 123.34970 * 105.60928 * 5 4 2 7 7 C 1.33816 * 115.09953 * 180.29631 * 6 5 4 8 8 S 1.70615 * 110.95692 * 359.72508 * 7 6 5 9 9 C 1.36650 * 123.35538 * 285.39060 * 5 4 2 10 10 C 1.46578 * 125.45617 * 359.97438 * 9 5 4 11 11 O 1.21705 * 120.00017 * 354.62166 * 10 9 5 12 12 N 1.34775 * 119.99783 * 174.62399 * 10 9 5 13 13 C 1.46506 * 119.99809 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.88517 * 322.56811 * 13 12 10 15 15 C 1.55405 * 110.88749 * 198.68978 * 13 12 10 16 16 C 1.54327 * 102.82764 * 277.26200 * 15 13 12 17 17 N 1.47028 * 107.40146 * 337.98149 * 16 15 13 18 18 C 1.36936 * 125.64661 * 178.82655 * 17 16 15 19 19 H 1.08003 * 119.99863 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00148 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99753 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46837 * 60.00715 * 22 20 18 24 24 H 1.48499 * 109.46906 * 180.02562 * 22 20 18 25 25 H 1.48490 * 109.47491 * 300.00514 * 22 20 18 26 26 C 1.47424 * 108.70138 * 358.86235 * 17 16 15 27 27 H 1.08997 * 109.46670 * 296.04267 * 1 2 3 28 28 H 1.08997 * 109.47272 * 56.04335 * 1 2 3 29 29 H 1.09000 * 109.46682 * 176.04286 * 1 2 3 30 30 H 1.09004 * 109.47508 * 182.27931 * 3 2 1 31 31 H 1.08996 * 109.47598 * 302.28429 * 3 2 1 32 32 H 1.09004 * 109.46976 * 62.28565 * 3 2 1 33 33 H 1.09003 * 109.46822 * 44.18611 * 4 2 1 34 34 H 1.09000 * 109.47104 * 284.18964 * 4 2 1 35 35 H 1.08004 * 122.44898 * 0.04477 * 6 5 4 36 36 H 1.08000 * 124.51877 * 179.74493 * 7 6 5 37 37 H 0.96998 * 120.00437 * 0.02562 * 12 10 9 38 38 H 1.09000 * 110.69243 * 158.97792 * 15 13 12 39 39 H 1.08998 * 110.85450 * 35.62704 * 15 13 12 40 40 H 1.08998 * 109.88302 * 218.48357 * 16 15 13 41 41 H 1.09003 * 109.87791 * 97.47287 * 16 15 13 42 42 H 0.97004 * 119.99507 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.36695 * 142.96918 * 26 17 16 44 44 H 1.08995 * 110.36527 * 265.18125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9956 -0.7661 1.1375 5 6 3.4517 -1.0756 0.9038 6 6 4.4754 -0.4362 1.5621 7 6 5.7062 -0.8367 1.2225 8 16 5.6437 -2.0662 0.0413 9 6 3.8861 -2.0226 0.0196 10 6 3.0249 -2.8633 -0.8171 11 8 1.8158 -2.8163 -0.6859 12 7 3.5719 -3.6884 -1.7316 13 6 2.7111 -4.5283 -2.5682 14 1 1.8576 -4.8977 -1.9997 15 6 3.5179 -5.7018 -3.1905 16 6 4.1751 -5.0490 -4.4249 17 7 3.3789 -3.8625 -4.7712 18 6 3.6451 -2.9940 -5.7958 19 1 2.9966 -2.1479 -5.9688 20 6 4.7485 -3.2011 -6.6122 21 7 5.5386 -4.2325 -6.4017 22 14 5.1112 -2.0167 -8.0105 23 1 5.3219 -0.6529 -7.4618 24 1 6.3351 -2.4569 -8.7271 25 1 3.9650 -1.9990 -8.9542 26 6 2.2469 -3.7623 -3.8320 27 1 -0.3632 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0844 1.3427 -0.0409 31 1 1.6133 1.9074 -0.8687 32 1 1.6795 1.8819 0.9098 33 1 1.4378 -1.6972 1.2378 34 1 1.8906 -0.1796 2.0503 35 1 4.2992 0.3358 2.2966 36 1 6.6176 -0.4354 1.6407 37 1 4.5355 -3.7262 -1.8359 38 1 2.8517 -6.5106 -3.4908 39 1 4.2760 -6.0630 -2.4956 40 1 4.1765 -5.7509 -5.2588 41 1 5.1971 -4.7533 -4.1877 42 1 6.3094 -4.3774 -6.9725 43 1 2.0457 -2.7186 -3.5904 44 1 1.3591 -4.2306 -4.2567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014594437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = 38.542040 kcal Electronic energy + Delta-G solvation = -25857.832943 eV Core-core repulsion = 22324.029529 eV Total energy + Delta-G solvation = -3533.803414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.74784 -38.44600 -36.90189 -36.26628 -33.63020 -31.80558 -30.31191 -29.17300 -27.98132 -27.48011 -26.79733 -24.50127 -24.00923 -21.72031 -21.56485 -20.07896 -19.74517 -18.68563 -18.12913 -16.79366 -15.92051 -15.78232 -15.47639 -14.97183 -14.91731 -14.56378 -14.45537 -14.22468 -13.73854 -13.63799 -13.11895 -12.89328 -12.80194 -12.37536 -12.22018 -12.11529 -11.86440 -11.76237 -11.61590 -11.56584 -11.43612 -10.91397 -10.86067 -10.84161 -10.61732 -10.28342 -10.12022 -9.92778 -9.62360 -9.47455 -8.82707 -8.62283 -8.52235 -8.41876 -8.18661 -6.76021 -5.66779 -2.98537 0.59250 1.52646 1.92091 2.37959 3.44109 3.45424 3.48237 3.49593 3.65906 4.17843 4.55109 4.82769 4.97380 5.08583 5.20230 5.29085 5.33149 5.36151 5.44110 5.52616 5.53896 5.58556 5.62258 5.79328 5.83059 5.88474 5.89530 5.93116 6.06115 6.23142 6.28023 6.31361 6.42231 6.54117 6.59506 6.80555 7.10805 7.12993 7.16516 7.58445 7.60185 7.84084 7.94476 8.30376 8.61598 9.27694 9.87734 10.53741 11.45275 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.004027 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.217050 B = 6951.462122 C = 7079.117859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.526 5.526 3 C 0.024 3.976 4 C 0.118 3.882 5 C -0.034 4.034 6 C -0.144 4.144 7 C -0.241 4.241 8 S 0.206 5.794 9 C -0.232 4.232 10 C 0.590 3.410 11 O -0.519 6.519 12 N -0.703 5.703 13 C 0.133 3.867 14 H 0.088 0.912 15 C -0.154 4.154 16 C 0.176 3.824 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.126 3.874 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.045 0.955 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 5.069 18.415 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.249 5.249 3 C -0.124 4.124 4 C -0.011 4.011 5 C -0.049 4.049 6 C -0.176 4.176 7 C -0.378 4.378 8 S 0.475 5.525 9 C -0.353 4.353 10 C 0.376 3.624 11 O -0.397 6.397 12 N -0.353 5.353 13 C 0.028 3.972 14 H 0.106 0.894 15 C -0.193 4.193 16 C 0.051 3.949 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.001 4.001 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.576 4.026 17.101 17.640 hybrid contribution -0.325 2.065 0.635 2.185 sum -1.901 6.091 17.736 18.849 Atomic orbital electron populations 1.22316 0.86808 1.02838 0.99514 1.61741 1.07894 1.12780 1.42533 1.22428 1.00954 0.89078 0.99976 1.20713 0.90375 0.99272 0.90771 1.19249 0.96562 0.94202 0.94889 1.19836 0.91102 1.03139 1.03502 1.25177 1.02354 1.05112 1.05192 1.83278 1.00926 1.33138 1.35194 1.24608 0.96789 1.06765 1.07164 1.16774 0.87147 0.79053 0.79452 1.90758 1.13315 1.66491 1.69158 1.45729 1.10327 1.42285 1.36997 1.22155 0.92981 0.90878 0.91188 0.89417 1.23269 0.99608 0.96768 0.99638 1.21163 0.93813 0.88260 0.91685 1.44450 1.26812 1.28224 1.33463 1.19011 1.07745 1.03782 1.04394 0.90655 1.24747 0.97784 0.98356 0.99596 1.69941 1.17316 1.29385 1.40666 0.86224 0.77334 0.80294 0.82091 1.21283 1.21660 1.21255 1.21927 0.91259 0.98270 0.88643 0.96465 0.91636 0.90616 0.91543 0.91530 0.96205 0.88330 0.94583 0.84416 0.81689 0.76903 0.90870 0.91635 0.93797 0.93674 0.93851 0.93625 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.54 60.07 0.57 0.98 16 2 N -0.53 -7.31 4.59 -252.72 -1.16 -8.47 16 3 C 0.02 0.29 9.40 60.06 0.56 0.85 16 4 C 0.12 1.53 4.34 -4.98 -0.02 1.51 16 5 C -0.03 -0.45 4.64 -105.48 -0.49 -0.94 16 6 C -0.14 -1.58 9.56 -41.41 -0.40 -1.97 16 7 C -0.24 -2.50 10.92 29.18 0.32 -2.18 16 8 S 0.21 2.53 22.17 -107.50 -2.38 0.14 16 9 C -0.23 -3.47 6.45 -36.79 -0.24 -3.71 16 10 C 0.59 10.29 7.77 -12.90 -0.10 10.19 16 11 O -0.52 -9.91 14.02 5.18 0.07 -9.84 16 12 N -0.70 -12.30 5.21 -52.93 -0.28 -12.57 16 13 C 0.13 2.44 3.33 -65.65 -0.22 2.22 16 14 H 0.09 1.52 7.73 -51.93 -0.40 1.12 16 15 C -0.15 -2.76 6.54 -24.76 -0.16 -2.92 16 16 C 0.18 4.14 5.36 -3.06 -0.02 4.12 16 17 N -0.60 -15.41 3.39 -170.07 -0.58 -15.98 16 18 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.13 2.76 6.93 -2.53 -0.02 2.75 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 33 H 0.10 1.41 6.69 -51.93 -0.35 1.06 16 34 H 0.04 0.39 7.98 -51.93 -0.41 -0.02 16 35 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.40 6.73 7.74 -40.82 -0.32 6.41 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 41 H 0.05 1.16 7.37 -51.93 -0.38 0.77 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -31.74 368.74 -10.49 -42.23 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.82 Total: 3.73 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.45 Total: 4.15 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -1.44 Total: -63.35 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.38 Total: 0.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.74 -10.49 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014594437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.772 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds