Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99958 * 2 1 4 4 C 1.46903 * 111.00248 * 123.95853 * 2 1 3 5 5 C 1.50694 * 109.47120 * 164.18262 * 4 2 1 6 6 C 1.37478 * 123.34970 * 105.60928 * 5 4 2 7 7 C 1.33816 * 115.09953 * 180.29631 * 6 5 4 8 8 S 1.70615 * 110.95692 * 359.72508 * 7 6 5 9 9 C 1.36650 * 123.35538 * 285.39060 * 5 4 2 10 10 C 1.46578 * 125.45617 * 359.97438 * 9 5 4 11 11 O 1.21705 * 120.00017 * 354.62166 * 10 9 5 12 12 N 1.34775 * 119.99783 * 174.62399 * 10 9 5 13 13 C 1.46506 * 119.99809 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.88517 * 322.56811 * 13 12 10 15 15 C 1.55405 * 110.88749 * 198.68978 * 13 12 10 16 16 C 1.54327 * 102.82764 * 277.26200 * 15 13 12 17 17 N 1.47028 * 107.40146 * 337.98149 * 16 15 13 18 18 C 1.36936 * 125.64661 * 178.82655 * 17 16 15 19 19 H 1.08003 * 119.99863 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00148 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99753 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46837 * 60.00715 * 22 20 18 24 24 H 1.48499 * 109.46906 * 180.02562 * 22 20 18 25 25 H 1.48490 * 109.47491 * 300.00514 * 22 20 18 26 26 C 1.47424 * 108.70138 * 358.86235 * 17 16 15 27 27 H 1.08997 * 109.46670 * 296.04267 * 1 2 3 28 28 H 1.08997 * 109.47272 * 56.04335 * 1 2 3 29 29 H 1.09000 * 109.46682 * 176.04286 * 1 2 3 30 30 H 1.09004 * 109.47508 * 182.27931 * 3 2 1 31 31 H 1.08996 * 109.47598 * 302.28429 * 3 2 1 32 32 H 1.09004 * 109.46976 * 62.28565 * 3 2 1 33 33 H 1.09003 * 109.46822 * 44.18611 * 4 2 1 34 34 H 1.09000 * 109.47104 * 284.18964 * 4 2 1 35 35 H 1.08004 * 122.44898 * 0.04477 * 6 5 4 36 36 H 1.08000 * 124.51877 * 179.74493 * 7 6 5 37 37 H 0.96998 * 120.00437 * 0.02562 * 12 10 9 38 38 H 1.09000 * 110.69243 * 158.97792 * 15 13 12 39 39 H 1.08998 * 110.85450 * 35.62704 * 15 13 12 40 40 H 1.08998 * 109.88302 * 218.48357 * 16 15 13 41 41 H 1.09003 * 109.87791 * 97.47287 * 16 15 13 42 42 H 0.97004 * 119.99507 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.36695 * 142.96918 * 26 17 16 44 44 H 1.08995 * 110.36527 * 265.18125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9956 -0.7661 1.1375 5 6 3.4517 -1.0756 0.9038 6 6 4.4754 -0.4362 1.5621 7 6 5.7062 -0.8367 1.2225 8 16 5.6437 -2.0662 0.0413 9 6 3.8861 -2.0226 0.0196 10 6 3.0249 -2.8633 -0.8171 11 8 1.8158 -2.8163 -0.6859 12 7 3.5719 -3.6884 -1.7316 13 6 2.7111 -4.5283 -2.5682 14 1 1.8576 -4.8977 -1.9997 15 6 3.5179 -5.7018 -3.1905 16 6 4.1751 -5.0490 -4.4249 17 7 3.3789 -3.8625 -4.7712 18 6 3.6451 -2.9940 -5.7958 19 1 2.9966 -2.1479 -5.9688 20 6 4.7485 -3.2011 -6.6122 21 7 5.5386 -4.2325 -6.4017 22 14 5.1112 -2.0167 -8.0105 23 1 5.3219 -0.6529 -7.4618 24 1 6.3351 -2.4569 -8.7271 25 1 3.9650 -1.9990 -8.9542 26 6 2.2469 -3.7623 -3.8320 27 1 -0.3632 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0844 1.3427 -0.0409 31 1 1.6133 1.9074 -0.8687 32 1 1.6795 1.8819 0.9098 33 1 1.4378 -1.6972 1.2378 34 1 1.8906 -0.1796 2.0503 35 1 4.2992 0.3358 2.2966 36 1 6.6176 -0.4354 1.6407 37 1 4.5355 -3.7262 -1.8359 38 1 2.8517 -6.5106 -3.4908 39 1 4.2760 -6.0630 -2.4956 40 1 4.1765 -5.7509 -5.2588 41 1 5.1971 -4.7533 -4.1877 42 1 6.3094 -4.3774 -6.9725 43 1 2.0457 -2.7186 -3.5904 44 1 1.3591 -4.2306 -4.2567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014594437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = 17.261947 kcal Electronic energy + Delta-G solvation = -25858.755717 eV Core-core repulsion = 22324.029529 eV Total energy + Delta-G solvation = -3534.726188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01836 -39.66736 -38.44969 -37.22927 -35.34555 -33.62614 -31.43034 -30.89757 -29.36126 -28.44267 -28.23645 -26.40588 -25.06267 -23.00533 -22.52475 -21.93378 -21.28535 -19.89638 -19.15980 -18.77691 -17.28198 -16.96731 -16.61752 -16.50770 -16.14313 -15.91303 -15.83587 -15.50093 -15.16964 -15.10269 -14.50181 -14.12037 -13.85003 -13.76341 -13.60016 -13.52803 -13.27275 -13.04400 -12.88316 -12.77615 -12.56225 -12.53805 -12.41261 -12.23921 -12.08638 -12.02132 -11.80877 -11.77673 -11.59586 -10.81697 -10.69407 -10.07353 -9.68448 -9.46051 -9.13553 -8.83654 -7.83077 -5.16747 -0.40355 0.56086 1.00683 1.44511 1.45528 1.48008 1.54399 2.16092 2.37604 2.50605 3.23417 3.35425 3.69398 3.74877 3.93499 3.97289 4.10648 4.15116 4.28817 4.33214 4.37823 4.47768 4.55010 4.63805 4.69936 4.73024 4.75633 4.82710 4.94240 4.98559 5.01183 5.03231 5.04780 5.07814 5.36645 5.37740 5.45158 5.61107 5.69436 5.78157 6.15508 6.22079 6.23041 6.59165 7.13995 7.28310 7.79467 8.43928 9.26725 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.004027 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.217050 B = 6951.462122 C = 7079.117859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.556 5.556 3 C 0.028 3.972 4 C 0.120 3.880 5 C -0.027 4.027 6 C -0.151 4.151 7 C -0.218 4.218 8 S 0.204 5.796 9 C -0.275 4.275 10 C 0.588 3.412 11 O -0.544 6.544 12 N -0.706 5.706 13 C 0.146 3.854 14 H 0.104 0.896 15 C -0.134 4.134 16 C 0.184 3.816 17 N -0.619 5.619 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.126 3.874 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.398 0.602 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.010 0.990 41 H 0.018 0.982 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 6.247 20.286 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.280 5.280 3 C -0.120 4.120 4 C -0.009 4.009 5 C -0.043 4.043 6 C -0.181 4.181 7 C -0.356 4.356 8 S 0.472 5.528 9 C -0.396 4.396 10 C 0.375 3.625 11 O -0.424 6.424 12 N -0.356 5.356 13 C 0.041 3.959 14 H 0.122 0.878 15 C -0.172 4.172 16 C 0.059 3.941 17 N -0.346 5.346 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.594 5.594 22 Si 0.801 3.199 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.207 1.207 26 C -0.001 4.001 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.185 0.815 36 H 0.217 0.783 37 H 0.233 0.767 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.982 5.205 18.995 19.719 hybrid contribution -0.519 1.763 0.092 1.841 sum -1.501 6.969 19.087 20.374 Atomic orbital electron populations 1.22239 0.86271 1.01895 1.00583 1.61693 1.08717 1.14059 1.43527 1.22390 1.00463 0.88237 1.00920 1.20678 0.89997 0.98742 0.91527 1.19555 0.97366 0.93378 0.94023 1.20055 0.90442 1.03688 1.03956 1.25607 1.03572 1.03158 1.03214 1.83281 0.99043 1.34268 1.36191 1.24454 0.98088 1.08319 1.08786 1.17154 0.87271 0.78801 0.79277 1.90734 1.14423 1.67243 1.69959 1.45737 1.10275 1.42597 1.37018 1.21986 0.93682 0.90357 0.89894 0.87782 1.23134 1.00191 0.96606 0.97298 1.20953 0.93057 0.87175 0.92898 1.44677 1.27962 1.28452 1.33521 1.19281 1.07947 1.04276 1.05502 0.91254 1.25496 0.97710 1.00025 1.01871 1.70140 1.17393 1.30610 1.41276 0.85249 0.77037 0.78391 0.79233 1.20743 1.21540 1.20678 1.22010 0.90575 0.97618 0.89871 0.94358 0.91625 0.92432 0.92106 0.91820 0.94063 0.90280 0.92145 0.81536 0.78319 0.76709 0.88783 0.88829 0.97126 0.96349 0.94326 0.95842 0.95131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 9.54 127.69 1.22 2.13 16 2 N -0.56 -15.04 4.59 -953.47 -4.37 -19.41 16 3 C 0.03 0.62 9.40 127.69 1.20 1.82 16 4 C 0.12 2.97 4.34 85.55 0.37 3.34 16 5 C -0.03 -0.68 4.64 -20.42 -0.09 -0.77 16 6 C -0.15 -2.83 9.56 21.08 0.20 -2.63 16 7 C -0.22 -3.80 10.92 66.81 0.73 -3.07 16 8 S 0.20 4.72 22.17 -56.49 -1.25 3.46 16 9 C -0.28 -8.10 6.45 24.08 0.16 -7.94 16 10 C 0.59 20.65 7.77 86.42 0.67 21.32 16 11 O -0.54 -21.13 14.02 -4.36 -0.06 -21.19 16 12 N -0.71 -24.75 5.21 -439.59 -2.29 -27.04 16 13 C 0.15 5.30 3.33 46.47 0.15 5.46 16 14 H 0.10 3.49 7.73 -2.39 -0.02 3.48 16 15 C -0.13 -4.65 6.54 31.87 0.21 -4.44 16 16 C 0.18 8.84 5.36 86.73 0.46 9.31 16 17 N -0.62 -32.44 3.39 -691.98 -2.35 -34.79 16 18 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 21 N -0.95 -56.19 10.31 21.65 0.22 -55.97 16 22 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 C 0.13 5.61 6.93 86.85 0.60 6.21 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.06 1.56 8.09 -2.39 -0.02 1.54 16 30 H 0.06 1.39 7.14 -2.38 -0.02 1.37 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.08 2.26 6.69 -2.39 -0.02 2.25 16 34 H 0.06 1.17 7.98 -2.39 -0.02 1.15 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.40 13.58 7.74 -92.71 -0.72 12.86 16 38 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 41 H 0.02 0.97 7.37 -2.39 -0.02 0.95 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -70.55 368.74 -0.58 -71.13 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.28 Total: 20.42 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 7.21 Total: 14.80 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -8.79 Total: -137.21 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.25 Total: 3.46 kcal Total: -70.55 -0.58 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014594437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.394 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds