Wall clock time and date at job start Tue Mar 31 2020 13:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99945 * 2 1 4 4 C 1.46894 * 111.00181 * 123.95197 * 2 1 3 5 5 C 1.50703 * 109.46986 * 66.04420 * 4 2 1 6 6 C 1.37474 * 123.35471 * 260.02455 * 5 4 2 7 7 C 1.33813 * 115.10340 * 179.97438 * 6 5 4 8 8 S 1.70626 * 110.95311 * 359.72722 * 7 6 5 9 9 C 1.36650 * 123.35227 * 80.00008 * 5 4 2 10 10 C 1.46590 * 125.45580 * 0.02562 * 9 5 4 11 11 O 1.21704 * 119.99562 * 0.02562 * 10 9 5 12 12 N 1.34774 * 119.99786 * 179.97438 * 10 9 5 13 13 C 1.46500 * 119.99653 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88755 * 31.11787 * 13 12 10 15 15 C 1.55155 * 111.00541 * 155.00458 * 13 12 10 16 16 C 1.54322 * 102.94686 * 82.56950 * 15 13 12 17 17 N 1.47027 * 107.26711 * 22.19452 * 16 15 13 18 18 C 1.36933 * 125.64361 * 181.02428 * 17 16 15 19 19 H 1.08008 * 119.99841 * 173.95405 * 18 17 16 20 20 C 1.38807 * 120.00636 * 353.95412 * 18 17 16 21 21 N 1.31619 * 119.99583 * 6.85877 * 20 18 17 22 22 Si 1.86796 * 120.00502 * 186.85860 * 20 18 17 23 23 H 1.48495 * 109.47358 * 94.98334 * 22 20 18 24 24 H 1.48506 * 109.47418 * 214.98538 * 22 20 18 25 25 H 1.48506 * 109.46851 * 334.98270 * 22 20 18 26 26 C 1.47420 * 108.70308 * 1.28479 * 17 16 15 27 27 H 1.09001 * 109.47412 * 296.04576 * 1 2 3 28 28 H 1.08996 * 109.47509 * 56.04341 * 1 2 3 29 29 H 1.08997 * 109.47368 * 176.04906 * 1 2 3 30 30 H 1.09004 * 109.47463 * 183.95609 * 3 2 1 31 31 H 1.09007 * 109.47195 * 303.95491 * 3 2 1 32 32 H 1.09000 * 109.47695 * 63.95460 * 3 2 1 33 33 H 1.09004 * 109.47476 * 306.05022 * 4 2 1 34 34 H 1.09000 * 109.47352 * 186.04625 * 4 2 1 35 35 H 1.08003 * 122.44750 * 359.95682 * 6 5 4 36 36 H 1.08003 * 124.52602 * 180.02562 * 7 6 5 37 37 H 0.96991 * 120.00388 * 0.02562 * 12 10 9 38 38 H 1.08999 * 110.71565 * 324.20577 * 15 13 12 39 39 H 1.09004 * 110.87370 * 201.00935 * 15 13 12 40 40 H 1.09003 * 109.87979 * 262.78270 * 16 15 13 41 41 H 1.08993 * 110.01458 * 141.68109 * 16 15 13 42 42 H 0.97005 * 119.99957 * 180.02562 * 21 20 18 43 43 H 1.09010 * 110.36379 * 94.48476 * 26 17 16 44 44 H 1.09000 * 110.36819 * 216.79835 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6369 -2.2204 0.9729 6 6 0.5845 -2.8180 1.6250 7 6 0.4150 -4.1180 1.3570 8 16 1.5856 -4.6693 0.2448 9 6 2.3251 -3.0764 0.1600 10 6 3.4897 -2.7220 -0.6567 11 8 3.9179 -1.5828 -0.6438 12 7 4.0867 -3.6578 -1.4210 13 6 5.2509 -3.3037 -2.2368 14 1 5.8320 -2.5131 -1.7622 15 6 6.1322 -4.5492 -2.5185 16 6 5.4213 -5.2119 -3.7172 17 7 4.6218 -4.1712 -4.3802 18 6 3.8237 -4.3560 -5.4774 19 1 3.1991 -3.5496 -5.8329 20 6 3.8172 -5.5795 -6.1330 21 7 4.4718 -6.6019 -5.6245 22 14 2.8796 -5.7750 -7.7367 23 1 3.8049 -5.5679 -8.8795 24 1 2.3017 -7.1411 -7.8089 25 1 1.7866 -4.7714 -7.7965 26 6 4.8266 -2.8947 -3.6718 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8525 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1756 35 1 -0.0583 -2.2777 2.3043 36 1 -0.3621 -4.7347 1.7838 37 1 3.7456 -4.5657 -1.4310 38 1 6.1412 -5.2178 -1.6577 39 1 7.1468 -4.2544 -2.7866 40 1 4.7699 -6.0121 -3.3657 41 1 6.1583 -5.6126 -4.4131 42 1 4.4676 -7.4569 -6.0828 43 1 5.6155 -2.3162 -4.1528 44 1 3.8990 -2.3230 -3.6443 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014594446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:11 Heat of formation + Delta-G solvation = 37.932605 kcal Electronic energy + Delta-G solvation = -25707.194635 eV Core-core repulsion = 22173.364794 eV Total energy + Delta-G solvation = -3533.829841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.79083 -38.49716 -36.95402 -36.26707 -33.65233 -31.83474 -30.34972 -29.19035 -27.99864 -27.52947 -26.81917 -24.51881 -24.03976 -21.74793 -21.59066 -20.06829 -19.79472 -18.71712 -18.15057 -16.81708 -15.92608 -15.82793 -15.54763 -14.98391 -14.95337 -14.58176 -14.46900 -14.27624 -13.74556 -13.65970 -13.14885 -12.89127 -12.82939 -12.41615 -12.25908 -12.14136 -11.88296 -11.76634 -11.66864 -11.61001 -11.47559 -10.95099 -10.86357 -10.86061 -10.65187 -10.30728 -10.09542 -9.93022 -9.62987 -9.50633 -8.86494 -8.64198 -8.55671 -8.43119 -8.21510 -6.77382 -5.70147 -3.01113 0.56393 1.50590 1.90419 2.34506 3.42353 3.44423 3.48365 3.49691 3.59289 4.15223 4.53578 4.79194 4.94227 5.06070 5.17822 5.24999 5.29907 5.35473 5.41434 5.48215 5.53114 5.54768 5.58920 5.76916 5.81142 5.87014 5.88078 5.89979 5.98031 6.21953 6.25129 6.30768 6.41341 6.54019 6.57092 6.76810 7.06426 7.09901 7.11633 7.53658 7.62316 7.82834 7.91984 8.28199 8.57820 9.25240 9.85530 10.51986 11.42331 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003764 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.097491 B = 7437.714744 C = 7623.823433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.526 5.526 3 C 0.032 3.968 4 C 0.117 3.883 5 C -0.034 4.034 6 C -0.144 4.144 7 C -0.241 4.241 8 S 0.211 5.789 9 C -0.235 4.235 10 C 0.588 3.412 11 O -0.520 6.520 12 N -0.703 5.703 13 C 0.131 3.869 14 H 0.092 0.908 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.125 3.875 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.251 0.749 43 H 0.028 0.972 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 7.378 17.446 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.250 5.250 3 C -0.116 4.116 4 C -0.012 4.012 5 C -0.049 4.049 6 C -0.176 4.176 7 C -0.378 4.378 8 S 0.480 5.520 9 C -0.356 4.356 10 C 0.374 3.626 11 O -0.398 6.398 12 N -0.353 5.353 13 C 0.026 3.974 14 H 0.110 0.890 15 C -0.193 4.193 16 C 0.050 3.950 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.002 4.002 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.115 6.357 16.169 18.111 hybrid contribution -1.545 0.959 0.509 1.888 sum -6.660 7.316 16.677 19.391 Atomic orbital electron populations 1.22436 0.87982 1.02246 0.99875 1.61786 1.07026 1.13588 1.42578 1.22320 1.01505 0.88138 0.99649 1.20754 1.01974 0.87716 0.90793 1.19230 0.94018 0.96278 0.95371 1.19834 0.99711 0.94312 1.03757 1.25203 1.06412 1.00354 1.05874 1.83362 1.21423 1.09176 1.38069 1.24618 1.04711 0.98036 1.08247 1.16817 0.81547 0.85194 0.79069 1.90770 1.64120 1.19074 1.65808 1.45717 1.32070 1.12725 1.44747 1.22158 0.85787 0.97764 0.91700 0.89038 1.23224 0.98950 0.96668 1.00485 1.21182 0.93622 0.90332 0.89876 1.44470 1.52888 1.03098 1.32581 1.19064 1.16683 0.97684 1.01741 0.90560 1.24775 1.00533 0.95983 0.99040 1.69966 1.46875 1.01121 1.39012 0.86149 0.79080 0.76963 0.83935 1.21685 1.21844 1.20687 1.21986 0.98451 0.90027 0.89703 0.96179 0.91596 0.91403 0.90766 0.91577 0.96352 0.94691 0.88107 0.84423 0.81651 0.76772 0.91684 0.90856 0.94052 0.93439 0.93864 0.95400 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.33 60.06 0.56 0.82 16 2 N -0.53 -7.06 4.85 -252.72 -1.22 -8.29 16 3 C 0.03 0.37 9.57 60.06 0.57 0.94 16 4 C 0.12 1.50 4.35 -4.98 -0.02 1.47 16 5 C -0.03 -0.44 4.54 -105.47 -0.48 -0.92 16 6 C -0.14 -1.55 9.17 -41.41 -0.38 -1.93 16 7 C -0.24 -2.46 10.92 29.18 0.32 -2.14 16 8 S 0.21 2.58 22.16 -107.50 -2.38 0.20 16 9 C -0.23 -3.47 6.45 -36.79 -0.24 -3.70 16 10 C 0.59 10.16 7.78 -12.89 -0.10 10.06 16 11 O -0.52 -9.88 13.98 5.19 0.07 -9.80 16 12 N -0.70 -12.22 5.19 -52.95 -0.27 -12.50 16 13 C 0.13 2.40 3.43 -65.66 -0.23 2.17 16 14 H 0.09 1.60 7.54 -51.93 -0.39 1.21 16 15 C -0.15 -2.77 6.54 -24.90 -0.16 -2.93 16 16 C 0.17 4.09 5.37 -3.06 -0.02 4.08 16 17 N -0.60 -15.31 3.39 -169.93 -0.58 -15.88 16 18 C -0.22 -6.26 10.26 -15.06 -0.15 -6.42 16 19 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -26.69 10.36 55.49 0.57 -26.11 16 22 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.13 2.72 6.95 -2.41 -0.02 2.71 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 30 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.10 1.44 6.57 -51.93 -0.34 1.10 16 35 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.40 6.77 7.78 -40.82 -0.32 6.45 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.04 1.05 7.55 -51.93 -0.39 0.66 16 41 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -31.56 368.02 -10.51 -42.07 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.79 Total: 3.65 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.44 Total: 3.91 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -1.50 Total: -62.78 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.38 Total: 0.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.56 -10.51 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014594446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.999 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds