Wall clock time and date at job start Tue Mar 31 2020 13:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99945 * 2 1 4 4 C 1.46894 * 111.00181 * 123.95197 * 2 1 3 5 5 C 1.50703 * 109.46986 * 66.04420 * 4 2 1 6 6 C 1.37474 * 123.35471 * 260.02455 * 5 4 2 7 7 C 1.33813 * 115.10340 * 179.97438 * 6 5 4 8 8 S 1.70626 * 110.95311 * 359.72722 * 7 6 5 9 9 C 1.36650 * 123.35227 * 80.00008 * 5 4 2 10 10 C 1.46590 * 125.45580 * 0.02562 * 9 5 4 11 11 O 1.21704 * 119.99562 * 0.02562 * 10 9 5 12 12 N 1.34774 * 119.99786 * 179.97438 * 10 9 5 13 13 C 1.46500 * 119.99653 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88755 * 31.11787 * 13 12 10 15 15 C 1.55155 * 111.00541 * 155.00458 * 13 12 10 16 16 C 1.54322 * 102.94686 * 82.56950 * 15 13 12 17 17 N 1.47027 * 107.26711 * 22.19452 * 16 15 13 18 18 C 1.36933 * 125.64361 * 181.02428 * 17 16 15 19 19 H 1.08008 * 119.99841 * 173.95405 * 18 17 16 20 20 C 1.38807 * 120.00636 * 353.95412 * 18 17 16 21 21 N 1.31619 * 119.99583 * 6.85877 * 20 18 17 22 22 Si 1.86796 * 120.00502 * 186.85860 * 20 18 17 23 23 H 1.48495 * 109.47358 * 94.98334 * 22 20 18 24 24 H 1.48506 * 109.47418 * 214.98538 * 22 20 18 25 25 H 1.48506 * 109.46851 * 334.98270 * 22 20 18 26 26 C 1.47420 * 108.70308 * 1.28479 * 17 16 15 27 27 H 1.09001 * 109.47412 * 296.04576 * 1 2 3 28 28 H 1.08996 * 109.47509 * 56.04341 * 1 2 3 29 29 H 1.08997 * 109.47368 * 176.04906 * 1 2 3 30 30 H 1.09004 * 109.47463 * 183.95609 * 3 2 1 31 31 H 1.09007 * 109.47195 * 303.95491 * 3 2 1 32 32 H 1.09000 * 109.47695 * 63.95460 * 3 2 1 33 33 H 1.09004 * 109.47476 * 306.05022 * 4 2 1 34 34 H 1.09000 * 109.47352 * 186.04625 * 4 2 1 35 35 H 1.08003 * 122.44750 * 359.95682 * 6 5 4 36 36 H 1.08003 * 124.52602 * 180.02562 * 7 6 5 37 37 H 0.96991 * 120.00388 * 0.02562 * 12 10 9 38 38 H 1.08999 * 110.71565 * 324.20577 * 15 13 12 39 39 H 1.09004 * 110.87370 * 201.00935 * 15 13 12 40 40 H 1.09003 * 109.87979 * 262.78270 * 16 15 13 41 41 H 1.08993 * 110.01458 * 141.68109 * 16 15 13 42 42 H 0.97005 * 119.99957 * 180.02562 * 21 20 18 43 43 H 1.09010 * 110.36379 * 94.48476 * 26 17 16 44 44 H 1.09000 * 110.36819 * 216.79835 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6369 -2.2204 0.9729 6 6 0.5845 -2.8180 1.6250 7 6 0.4150 -4.1180 1.3570 8 16 1.5856 -4.6693 0.2448 9 6 2.3251 -3.0764 0.1600 10 6 3.4897 -2.7220 -0.6567 11 8 3.9179 -1.5828 -0.6438 12 7 4.0867 -3.6578 -1.4210 13 6 5.2509 -3.3037 -2.2368 14 1 5.8320 -2.5131 -1.7622 15 6 6.1322 -4.5492 -2.5185 16 6 5.4213 -5.2119 -3.7172 17 7 4.6218 -4.1712 -4.3802 18 6 3.8237 -4.3560 -5.4774 19 1 3.1991 -3.5496 -5.8329 20 6 3.8172 -5.5795 -6.1330 21 7 4.4718 -6.6019 -5.6245 22 14 2.8796 -5.7750 -7.7367 23 1 3.8049 -5.5679 -8.8795 24 1 2.3017 -7.1411 -7.8089 25 1 1.7866 -4.7714 -7.7965 26 6 4.8266 -2.8947 -3.6718 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8525 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1756 35 1 -0.0583 -2.2777 2.3043 36 1 -0.3621 -4.7347 1.7838 37 1 3.7456 -4.5657 -1.4310 38 1 6.1412 -5.2178 -1.6577 39 1 7.1468 -4.2544 -2.7866 40 1 4.7699 -6.0121 -3.3657 41 1 6.1583 -5.6126 -4.4131 42 1 4.4676 -7.4569 -6.0828 43 1 5.6155 -2.3162 -4.1528 44 1 3.8990 -2.3230 -3.6443 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014594446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:11 Heat of formation + Delta-G solvation = 16.662670 kcal Electronic energy + Delta-G solvation = -25708.116969 eV Core-core repulsion = 22173.364794 eV Total energy + Delta-G solvation = -3534.752175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04684 -39.70394 -38.49580 -37.20057 -35.35788 -33.64534 -31.45447 -30.90631 -29.36224 -28.45053 -28.23478 -26.40866 -25.07541 -23.01214 -22.52232 -21.93267 -21.31665 -19.91741 -19.16708 -18.79485 -17.29418 -16.98320 -16.62310 -16.54032 -16.14465 -15.87281 -15.84884 -15.52142 -15.19397 -15.12344 -14.51889 -14.12686 -13.86656 -13.77124 -13.59812 -13.53469 -13.26836 -13.04011 -12.90265 -12.79930 -12.58687 -12.52172 -12.42945 -12.26320 -12.08333 -12.00774 -11.79851 -11.77146 -11.57822 -10.83860 -10.69349 -10.10145 -9.70754 -9.48670 -9.12759 -8.83406 -7.85062 -5.17826 -0.42295 0.54584 0.99877 1.42388 1.45943 1.47507 1.56128 2.16083 2.31557 2.50259 3.24453 3.33848 3.69268 3.75546 3.91874 3.94997 4.09194 4.13009 4.29225 4.33050 4.37158 4.48244 4.54451 4.63588 4.68795 4.73736 4.75080 4.83077 4.92514 4.98038 5.01246 5.03119 5.04532 5.06460 5.35605 5.37574 5.45839 5.59066 5.69419 5.77030 6.14794 6.21336 6.22001 6.56857 7.13056 7.24947 7.78534 8.43610 9.25519 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003764 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.097491 B = 7437.714744 C = 7623.823433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.036 3.964 4 C 0.119 3.881 5 C -0.025 4.025 6 C -0.150 4.150 7 C -0.217 4.217 8 S 0.203 5.797 9 C -0.277 4.277 10 C 0.586 3.414 11 O -0.545 6.545 12 N -0.705 5.705 13 C 0.145 3.855 14 H 0.106 0.894 15 C -0.135 4.135 16 C 0.184 3.816 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.056 4.056 21 N -0.944 5.944 22 Si 0.971 3.029 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.124 3.876 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.248 0.752 43 H 0.033 0.967 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 7.706 19.173 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.112 4.112 4 C -0.011 4.011 5 C -0.042 4.042 6 C -0.181 4.181 7 C -0.354 4.354 8 S 0.472 5.528 9 C -0.398 4.398 10 C 0.374 3.626 11 O -0.424 6.424 12 N -0.355 5.355 13 C 0.039 3.961 14 H 0.124 0.876 15 C -0.173 4.173 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.592 5.592 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.199 1.199 26 C -0.002 4.002 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.217 0.783 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.592 6.700 17.916 20.232 hybrid contribution -1.156 0.894 0.009 1.461 sum -7.748 7.595 17.925 20.952 Atomic orbital electron populations 1.22404 0.86771 1.01997 1.00970 1.61740 1.08352 1.14531 1.43375 1.22268 1.00452 0.87703 1.00801 1.20705 1.00874 0.87792 0.91691 1.19531 0.93956 0.96291 0.94374 1.20050 0.99373 0.94607 1.04060 1.25619 1.05585 1.00414 1.03796 1.83394 1.22244 1.08067 1.39113 1.24446 1.05336 0.99947 1.10071 1.17187 0.81932 0.84685 0.78808 1.90747 1.65086 1.19891 1.66725 1.45723 1.32076 1.12945 1.44784 1.21980 0.86220 0.98130 0.89780 0.87584 1.23086 0.99055 0.96353 0.98828 1.20965 0.92360 0.89892 0.90911 1.44689 1.52708 1.04833 1.32440 1.19324 1.17176 0.97715 1.02897 0.91137 1.25513 1.01809 0.95725 1.01897 1.70155 1.47965 1.01196 1.39904 0.85169 0.77992 0.76815 0.80018 1.21499 1.21739 1.19881 1.22082 0.97682 0.88617 0.91824 0.94107 0.91551 0.92129 0.92402 0.91259 0.94362 0.92337 0.90275 0.81536 0.78292 0.76666 0.89045 0.88842 0.96678 0.96768 0.94294 0.94892 0.95733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.33 127.69 1.19 1.74 16 2 N -0.56 -14.40 4.85 -953.48 -4.62 -19.02 16 3 C 0.04 0.79 9.57 127.69 1.22 2.02 16 4 C 0.12 2.89 4.35 85.56 0.37 3.26 16 5 C -0.03 -0.62 4.54 -20.42 -0.09 -0.71 16 6 C -0.15 -2.76 9.17 21.08 0.19 -2.57 16 7 C -0.22 -3.72 10.92 66.81 0.73 -2.99 16 8 S 0.20 4.72 22.16 -56.49 -1.25 3.47 16 9 C -0.28 -8.05 6.45 24.08 0.16 -7.89 16 10 C 0.59 20.43 7.78 86.42 0.67 21.10 16 11 O -0.54 -21.04 13.98 -4.36 -0.06 -21.10 16 12 N -0.71 -24.65 5.19 -439.64 -2.28 -26.93 16 13 C 0.14 5.23 3.43 46.46 0.16 5.39 16 14 H 0.11 3.60 7.54 -2.39 -0.02 3.58 16 15 C -0.13 -4.71 6.54 31.78 0.21 -4.50 16 16 C 0.18 8.78 5.37 86.73 0.47 9.25 16 17 N -0.62 -32.19 3.39 -691.54 -2.35 -34.54 16 18 C -0.24 -13.89 10.26 84.03 0.86 -13.02 16 19 H 0.07 4.01 7.84 -2.91 -0.02 3.99 16 20 C -0.06 -3.19 5.48 84.86 0.47 -2.72 16 21 N -0.94 -55.84 10.36 21.65 0.22 -55.62 16 22 Si 0.97 46.25 29.56 68.60 2.03 48.28 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 C 0.12 5.49 6.95 86.93 0.60 6.10 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 29 H 0.06 1.33 6.71 -2.39 -0.02 1.31 16 30 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 31 H 0.07 1.45 8.12 -2.38 -0.02 1.43 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.12 8.08 -2.38 -0.02 1.10 16 34 H 0.08 2.27 6.57 -2.39 -0.02 2.26 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.40 13.71 7.78 -92.72 -0.72 12.99 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.01 0.79 7.55 -2.39 -0.02 0.77 16 41 H 0.01 0.76 7.36 -2.39 -0.02 0.75 16 42 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 43 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.92 368.02 -0.82 -70.75 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.28 Total: 20.26 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 7.21 Total: 14.46 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -9.03 Total: -136.11 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.25 Total: 3.47 kcal Total: -69.92 -0.82 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014594446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.409 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds