Wall clock time and date at job start Tue Mar 31 2020 13:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99590 * 2 1 4 4 C 1.46902 * 111.00044 * 123.95001 * 2 1 3 5 5 C 1.50706 * 109.46577 * 66.04813 * 4 2 1 6 6 C 1.37474 * 123.34913 * 260.01935 * 5 4 2 7 7 C 1.33814 * 115.09729 * 179.97438 * 6 5 4 8 8 S 1.70618 * 110.95787 * 0.02562 * 7 6 5 9 9 C 1.36644 * 123.35076 * 79.72965 * 5 4 2 10 10 C 1.46583 * 125.45829 * 0.02562 * 9 5 4 11 11 O 1.21703 * 120.00320 * 359.97438 * 10 9 5 12 12 N 1.34776 * 119.99936 * 180.02562 * 10 9 5 13 13 C 1.46507 * 120.00042 * 179.97438 * 12 10 9 14 14 H 1.08995 * 112.84636 * 334.66736 * 13 12 10 15 15 C 1.53777 * 113.61220 * 105.86171 * 13 12 10 16 16 C 1.54048 * 86.98568 * 89.16372 * 15 13 12 17 17 H 1.09004 * 113.61009 * 270.87846 * 16 15 13 18 18 N 1.46500 * 113.69557 * 139.98920 * 16 15 13 19 19 C 1.36933 * 120.00375 * 107.46751 * 18 16 15 20 20 H 1.08006 * 119.99757 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00460 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99906 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00069 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46715 * 120.00149 * 23 21 19 26 26 H 1.48503 * 109.46878 * 240.00015 * 23 21 19 27 27 C 1.53777 * 87.07804 * 25.42981 * 16 15 13 28 28 H 1.09004 * 109.47329 * 296.04977 * 1 2 3 29 29 H 1.09001 * 109.47296 * 56.04489 * 1 2 3 30 30 H 1.08997 * 109.47027 * 176.04633 * 1 2 3 31 31 H 1.09004 * 109.46347 * 183.95089 * 3 2 1 32 32 H 1.08991 * 109.47438 * 303.95165 * 3 2 1 33 33 H 1.08996 * 109.47064 * 63.96027 * 3 2 1 34 34 H 1.09000 * 109.46894 * 306.05046 * 4 2 1 35 35 H 1.09000 * 109.47263 * 186.04612 * 4 2 1 36 36 H 1.07997 * 122.45257 * 359.94702 * 6 5 4 37 37 H 1.08002 * 124.52558 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00115 * 359.97438 * 12 10 9 39 39 H 1.09007 * 113.61609 * 203.66457 * 15 13 12 40 40 H 1.08997 * 113.61715 * 334.56323 * 15 13 12 41 41 H 0.96999 * 119.99752 * 287.46422 * 18 16 15 42 42 H 0.96997 * 119.99881 * 180.02562 * 22 21 19 43 43 H 1.09003 * 113.61469 * 220.02319 * 27 16 15 44 44 H 1.08995 * 113.69218 * 89.13231 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5845 -2.8179 1.6251 7 6 0.4151 -4.1179 1.3570 8 16 1.5905 -4.6712 0.2510 9 6 2.3219 -3.0751 0.1559 10 6 3.4826 -2.7191 -0.6656 11 8 3.9098 -1.5796 -0.6541 12 7 4.0760 -3.6535 -1.4344 13 6 5.2357 -3.2976 -2.2559 14 1 5.2623 -2.2391 -2.5145 15 6 6.5684 -3.8307 -1.7040 16 6 6.3074 -5.1046 -2.5299 17 1 5.7376 -5.8635 -1.9935 18 7 7.5070 -5.6442 -3.1749 19 6 8.0798 -6.7947 -2.7025 20 1 7.6474 -7.3042 -1.8539 21 6 9.2161 -7.3062 -3.3140 22 7 9.7427 -6.6856 -4.3483 23 14 9.9979 -8.8754 -2.6689 24 1 9.2196 -9.3748 -1.5070 25 1 10.0013 -9.9034 -3.7406 26 1 11.3939 -8.5956 -2.2468 27 6 5.4481 -4.2313 -3.4592 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5610 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 -0.0581 -2.2778 2.3045 37 1 -0.3616 -4.7349 1.7843 38 1 3.7353 -4.5616 -1.4439 39 1 7.4374 -3.2640 -2.0385 40 1 6.5595 -3.9973 -0.6269 41 1 7.8954 -5.1864 -3.9368 42 1 10.5365 -7.0433 -4.7759 43 1 4.5353 -4.7213 -3.7982 44 1 6.0100 -3.7735 -4.2733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020203999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:23 Heat of formation + Delta-G solvation = 42.960213 kcal Electronic energy + Delta-G solvation = -24768.099783 eV Core-core repulsion = 21234.487955 eV Total energy + Delta-G solvation = -3533.611828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11131 -38.95125 -37.52515 -36.45219 -33.99392 -32.59809 -30.58508 -29.83560 -27.90885 -27.66175 -25.09763 -24.76327 -24.16162 -22.47509 -21.78951 -21.44177 -19.18981 -18.72876 -18.30724 -17.09545 -16.14981 -15.93071 -15.72037 -15.15402 -15.12253 -14.95817 -14.59994 -14.45048 -13.99054 -13.78696 -13.40354 -13.10050 -12.98058 -12.65725 -12.56824 -12.31829 -12.03134 -11.84049 -11.82413 -11.77716 -11.65757 -11.58400 -11.09688 -10.90812 -10.75988 -10.29024 -10.18321 -9.90356 -9.74187 -9.54708 -9.05793 -8.89507 -8.76552 -8.68897 -8.39987 -6.97008 -5.79273 -3.08058 0.34882 1.28098 1.67536 2.15111 3.23393 3.25613 3.42120 3.47804 3.50057 3.97574 4.58303 4.61448 4.72863 4.87863 4.98196 5.06433 5.10204 5.14102 5.23511 5.25319 5.37505 5.43126 5.47156 5.52404 5.61578 5.68426 5.71346 5.84214 5.88950 5.94562 6.05460 6.07646 6.21316 6.28541 6.35409 6.54176 6.66224 6.72675 6.88514 6.93835 7.11032 7.62411 7.68808 8.32592 8.39218 9.50549 10.08139 10.42657 11.43177 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002694 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.012145 B =10392.383693 C =11338.812816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.527 5.527 3 C 0.031 3.969 4 C 0.114 3.886 5 C -0.029 4.029 6 C -0.143 4.143 7 C -0.235 4.235 8 S 0.202 5.798 9 C -0.238 4.238 10 C 0.590 3.410 11 O -0.512 6.512 12 N -0.706 5.706 13 C 0.120 3.880 14 H 0.098 0.902 15 C -0.176 4.176 16 C 0.166 3.834 17 H 0.073 0.927 18 N -0.712 5.712 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.159 4.159 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.395 0.605 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.064 0.936 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.573 10.747 11.323 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.251 5.251 3 C -0.117 4.117 4 C -0.015 4.015 5 C -0.044 4.044 6 C -0.175 4.175 7 C -0.373 4.373 8 S 0.470 5.530 9 C -0.360 4.360 10 C 0.375 3.625 11 O -0.389 6.389 12 N -0.356 5.356 13 C 0.015 3.985 14 H 0.116 0.884 15 C -0.218 4.218 16 C 0.054 3.946 17 H 0.091 0.909 18 N -0.350 5.350 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.199 4.199 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.185 0.815 38 H 0.229 0.771 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.721 9.717 10.280 25.921 hybrid contribution -0.352 0.479 1.610 1.716 sum -22.073 10.196 11.890 27.066 Atomic orbital electron populations 1.22443 0.88007 1.02144 1.00021 1.61821 1.07010 1.13709 1.42538 1.22332 1.01575 0.88046 0.99787 1.20786 1.02128 0.87615 0.90964 1.19266 0.93859 0.96407 0.94881 1.19872 0.99660 0.94371 1.03627 1.25195 1.05980 1.00201 1.05898 1.83179 1.21593 1.08980 1.39231 1.24568 1.04909 0.97884 1.08597 1.16815 0.81331 0.85178 0.79139 1.90798 1.64096 1.19254 1.64703 1.45596 1.32110 1.12457 1.45477 1.21799 0.85154 0.99548 0.92010 0.88440 1.24349 0.95862 1.01089 1.00527 1.21675 0.88843 0.91689 0.92398 0.90923 1.42405 1.27924 1.28210 1.36440 1.19340 1.06849 1.00340 1.10928 0.91066 1.24769 0.98623 0.99329 0.98194 1.69667 1.23874 1.40735 1.23696 0.86123 0.79129 0.83066 0.77907 1.20528 1.21849 1.21836 1.23856 1.00686 0.98179 0.97192 0.96042 0.91605 0.91459 0.90693 0.91549 0.96172 0.94450 0.88000 0.84227 0.81498 0.77089 0.89537 0.92415 0.78000 0.93486 0.91768 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.33 60.06 0.56 0.76 16 2 N -0.53 -5.93 4.83 -252.72 -1.22 -7.15 16 3 C 0.03 0.30 9.57 60.07 0.57 0.88 16 4 C 0.11 1.27 4.35 -4.97 -0.02 1.25 16 5 C -0.03 -0.32 4.54 -105.47 -0.48 -0.80 16 6 C -0.14 -1.25 9.17 -41.41 -0.38 -1.63 16 7 C -0.24 -1.87 10.92 29.18 0.32 -1.55 16 8 S 0.20 1.86 22.16 -107.50 -2.38 -0.52 16 9 C -0.24 -2.90 6.45 -36.79 -0.24 -3.14 16 10 C 0.59 8.64 7.78 -12.90 -0.10 8.54 16 11 O -0.51 -8.73 13.95 5.19 0.07 -8.66 16 12 N -0.71 -9.82 5.26 -54.35 -0.29 -10.10 16 13 C 0.12 1.86 4.30 -67.12 -0.29 1.57 16 14 H 0.10 1.57 7.50 -51.93 -0.39 1.18 16 15 C -0.18 -3.14 7.70 -25.78 -0.20 -3.34 16 16 C 0.17 3.21 4.37 -66.98 -0.29 2.92 16 17 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 18 N -0.71 -17.62 5.41 -52.50 -0.28 -17.90 16 19 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 C -0.16 -2.56 7.57 -25.92 -0.20 -2.75 16 28 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.62 6.71 -51.93 -0.35 0.27 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.10 1.33 6.59 -51.93 -0.34 0.99 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.39 4.83 7.82 -40.82 -0.32 4.51 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.39 10.13 7.93 -40.82 -0.32 9.80 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -31.85 375.21 -10.48 -42.34 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.75 Total: 11.00 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.99 Total: -4.60 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -1.07 Total: -62.42 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.38 Total: -0.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.85 -10.48 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020203999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.297 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds