Wall clock time and date at job start Tue Mar 31 2020 13:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99590 * 2 1 4 4 C 1.46902 * 111.00044 * 123.95001 * 2 1 3 5 5 C 1.50706 * 109.46577 * 66.04813 * 4 2 1 6 6 C 1.37474 * 123.34913 * 260.01935 * 5 4 2 7 7 C 1.33814 * 115.09729 * 179.97438 * 6 5 4 8 8 S 1.70618 * 110.95787 * 0.02562 * 7 6 5 9 9 C 1.36644 * 123.35076 * 79.72965 * 5 4 2 10 10 C 1.46583 * 125.45829 * 0.02562 * 9 5 4 11 11 O 1.21703 * 120.00320 * 359.97438 * 10 9 5 12 12 N 1.34776 * 119.99936 * 180.02562 * 10 9 5 13 13 C 1.46507 * 120.00042 * 179.97438 * 12 10 9 14 14 H 1.08995 * 112.84636 * 334.66736 * 13 12 10 15 15 C 1.53777 * 113.61220 * 105.86171 * 13 12 10 16 16 C 1.54048 * 86.98568 * 89.16372 * 15 13 12 17 17 H 1.09004 * 113.61009 * 270.87846 * 16 15 13 18 18 N 1.46500 * 113.69557 * 139.98920 * 16 15 13 19 19 C 1.36933 * 120.00375 * 107.46751 * 18 16 15 20 20 H 1.08006 * 119.99757 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00460 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99906 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00069 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46715 * 120.00149 * 23 21 19 26 26 H 1.48503 * 109.46878 * 240.00015 * 23 21 19 27 27 C 1.53777 * 87.07804 * 25.42981 * 16 15 13 28 28 H 1.09004 * 109.47329 * 296.04977 * 1 2 3 29 29 H 1.09001 * 109.47296 * 56.04489 * 1 2 3 30 30 H 1.08997 * 109.47027 * 176.04633 * 1 2 3 31 31 H 1.09004 * 109.46347 * 183.95089 * 3 2 1 32 32 H 1.08991 * 109.47438 * 303.95165 * 3 2 1 33 33 H 1.08996 * 109.47064 * 63.96027 * 3 2 1 34 34 H 1.09000 * 109.46894 * 306.05046 * 4 2 1 35 35 H 1.09000 * 109.47263 * 186.04612 * 4 2 1 36 36 H 1.07997 * 122.45257 * 359.94702 * 6 5 4 37 37 H 1.08002 * 124.52558 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00115 * 359.97438 * 12 10 9 39 39 H 1.09007 * 113.61609 * 203.66457 * 15 13 12 40 40 H 1.08997 * 113.61715 * 334.56323 * 15 13 12 41 41 H 0.96999 * 119.99752 * 287.46422 * 18 16 15 42 42 H 0.96997 * 119.99881 * 180.02562 * 22 21 19 43 43 H 1.09003 * 113.61469 * 220.02319 * 27 16 15 44 44 H 1.08995 * 113.69218 * 89.13231 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5845 -2.8179 1.6251 7 6 0.4151 -4.1179 1.3570 8 16 1.5905 -4.6712 0.2510 9 6 2.3219 -3.0751 0.1559 10 6 3.4826 -2.7191 -0.6656 11 8 3.9098 -1.5796 -0.6541 12 7 4.0760 -3.6535 -1.4344 13 6 5.2357 -3.2976 -2.2559 14 1 5.2623 -2.2391 -2.5145 15 6 6.5684 -3.8307 -1.7040 16 6 6.3074 -5.1046 -2.5299 17 1 5.7376 -5.8635 -1.9935 18 7 7.5070 -5.6442 -3.1749 19 6 8.0798 -6.7947 -2.7025 20 1 7.6474 -7.3042 -1.8539 21 6 9.2161 -7.3062 -3.3140 22 7 9.7427 -6.6856 -4.3483 23 14 9.9979 -8.8754 -2.6689 24 1 9.2196 -9.3748 -1.5070 25 1 10.0013 -9.9034 -3.7406 26 1 11.3939 -8.5956 -2.2468 27 6 5.4481 -4.2313 -3.4592 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5610 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 -0.0581 -2.2778 2.3045 37 1 -0.3616 -4.7349 1.7843 38 1 3.7353 -4.5616 -1.4439 39 1 7.4374 -3.2640 -2.0385 40 1 6.5595 -3.9973 -0.6269 41 1 7.8954 -5.1864 -3.9368 42 1 10.5365 -7.0433 -4.7759 43 1 4.5353 -4.7213 -3.7982 44 1 6.0100 -3.7735 -4.2733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020203999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:23 Heat of formation + Delta-G solvation = 20.904447 kcal Electronic energy + Delta-G solvation = -24769.056192 eV Core-core repulsion = 21234.487955 eV Total energy + Delta-G solvation = -3534.568238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24280 -39.99533 -38.72859 -37.21039 -35.74413 -34.11096 -31.94609 -31.15841 -28.81169 -28.39678 -26.57824 -26.38035 -25.15576 -23.96316 -22.66980 -22.48793 -20.46802 -19.89459 -19.15596 -19.04093 -17.26085 -16.99923 -16.57305 -16.54732 -16.19832 -15.89292 -15.87469 -15.51089 -15.42298 -15.13748 -14.70914 -14.23884 -13.86288 -13.82726 -13.46514 -13.37804 -13.30642 -13.27233 -13.02919 -12.83653 -12.60329 -12.56368 -12.52395 -12.42795 -12.09962 -11.84784 -11.81739 -11.73920 -11.20542 -10.88992 -10.84638 -10.08832 -9.71533 -9.47379 -9.15614 -8.98146 -7.94061 -5.22525 -0.44388 0.53180 0.97059 1.40852 1.48577 1.49159 1.59111 2.12105 2.20798 2.57276 3.22141 3.37464 3.68810 3.80962 3.87442 3.93828 3.96746 4.09787 4.29217 4.31813 4.32646 4.36132 4.48326 4.53488 4.62873 4.72808 4.75035 4.81791 4.91679 4.91809 5.00652 5.03139 5.05279 5.13165 5.19975 5.24789 5.34151 5.36971 5.51907 5.71025 6.10795 6.20468 6.28110 6.52761 7.22658 7.34361 8.10477 8.33536 9.29477 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002694 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.012145 B =10392.383693 C =11338.812816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.034 3.966 4 C 0.116 3.884 5 C -0.026 4.026 6 C -0.153 4.153 7 C -0.216 4.216 8 S 0.223 5.777 9 C -0.279 4.279 10 C 0.587 3.413 11 O -0.545 6.545 12 N -0.702 5.702 13 C 0.139 3.861 14 H 0.093 0.907 15 C -0.171 4.171 16 C 0.154 3.846 17 H 0.081 0.919 18 N -0.726 5.726 19 C -0.242 4.242 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.296 1.296 27 C -0.143 4.143 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.200 0.800 38 H 0.404 0.596 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.084 0.916 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.406 9.939 12.921 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.114 4.114 4 C -0.013 4.013 5 C -0.042 4.042 6 C -0.183 4.183 7 C -0.354 4.354 8 S 0.491 5.509 9 C -0.400 4.400 10 C 0.375 3.625 11 O -0.424 6.424 12 N -0.353 5.353 13 C 0.033 3.967 14 H 0.111 0.889 15 C -0.214 4.214 16 C 0.044 3.956 17 H 0.098 0.902 18 N -0.364 5.364 19 C -0.374 4.374 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.224 1.224 27 C -0.182 4.182 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.181 0.819 37 H 0.217 0.783 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.617 8.902 11.915 28.761 hybrid contribution 0.409 0.774 1.192 1.479 sum -24.208 9.676 13.108 29.180 Atomic orbital electron populations 1.22428 0.86570 1.02244 1.00960 1.61788 1.08444 1.14266 1.42962 1.22281 1.00364 0.87905 1.00854 1.20699 1.00615 0.88213 0.91794 1.19499 0.94122 0.96216 0.94403 1.20025 0.99404 0.94830 1.04070 1.25632 1.05445 1.00141 1.04139 1.83083 1.21487 1.06877 1.39430 1.24394 1.05379 1.00193 1.10070 1.17210 0.81751 0.84671 0.78896 1.90781 1.65288 1.20540 1.65798 1.45499 1.31496 1.13019 1.45264 1.21474 0.84619 0.99113 0.91483 0.88919 1.24193 0.96922 1.00253 0.99989 1.21990 0.87769 0.92320 0.93557 0.90151 1.42591 1.29492 1.27796 1.36492 1.19739 1.06512 1.00718 1.10411 0.90395 1.25572 0.99701 1.02691 0.98957 1.69819 1.24425 1.42491 1.25345 0.85097 0.77848 0.79362 0.77610 1.18857 1.22022 1.22363 1.23677 1.00613 0.97168 0.96766 0.94581 0.91183 0.91665 0.92671 0.90818 0.94704 0.92726 0.90771 0.81910 0.78283 0.75980 0.90950 0.92786 0.79325 0.94051 0.89697 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.33 127.69 1.19 1.61 16 2 N -0.55 -12.00 4.83 -953.45 -4.60 -16.61 16 3 C 0.03 0.66 9.57 127.69 1.22 1.88 16 4 C 0.12 2.51 4.35 85.56 0.37 2.88 16 5 C -0.03 -0.54 4.54 -20.42 -0.09 -0.63 16 6 C -0.15 -2.19 9.17 21.08 0.19 -2.00 16 7 C -0.22 -2.62 10.92 66.81 0.73 -1.89 16 8 S 0.22 3.57 22.16 -56.49 -1.25 2.31 16 9 C -0.28 -6.51 6.45 24.08 0.16 -6.36 16 10 C 0.59 17.15 7.78 86.42 0.67 17.82 16 11 O -0.55 -19.10 13.95 -4.36 -0.06 -19.16 16 12 N -0.70 -19.06 5.26 -444.09 -2.34 -21.40 16 13 C 0.14 4.27 4.30 45.51 0.20 4.47 16 14 H 0.09 3.01 7.50 -2.39 -0.02 2.99 16 15 C -0.17 -6.16 7.70 31.21 0.24 -5.92 16 16 C 0.15 5.88 4.37 45.61 0.20 6.08 16 17 H 0.08 2.95 8.10 -2.38 -0.02 2.93 16 18 N -0.73 -36.25 5.41 -320.01 -1.73 -37.98 16 19 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 22 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 23 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 C -0.14 -4.47 7.57 31.12 0.24 -4.23 16 28 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.06 1.07 6.71 -2.39 -0.02 1.05 16 31 H 0.05 1.26 8.12 -2.38 -0.02 1.24 16 32 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 35 H 0.07 2.01 6.59 -2.39 -0.02 1.99 16 36 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.40 9.36 7.82 -92.71 -0.72 8.64 16 39 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.37 20.11 7.93 -92.71 -0.73 19.38 16 42 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16 Total: -1.00 -69.53 375.21 -1.50 -71.02 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.44 Total: 35.66 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.62 Total: -2.69 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -8.39 Total: -135.11 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.25 Total: 2.31 kcal Total: -69.53 -1.50 -71.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020203999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.927 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds