Wall clock time and date at job start Tue Mar 31 2020 14:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35271 * 126.70843 * 2 1 4 4 C 1.41936 * 103.95870 * 180.02562 * 3 2 1 5 5 O 1.35709 * 126.87901 * 180.02562 * 4 3 2 6 6 C 1.42899 * 117.00193 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47034 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00448 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99643 * 179.97438 * 7 6 5 10 10 C 1.46923 * 120.63265 * 0.02562 * 9 7 6 11 11 C 1.53190 * 108.77529 * 233.58415 * 10 9 7 12 12 C 1.53046 * 109.31047 * 305.36491 * 11 10 9 13 13 C 1.53035 * 109.53887 * 61.36679 * 12 11 10 14 14 H 1.08997 * 109.49928 * 58.58273 * 13 12 11 15 15 N 1.46499 * 109.49554 * 178.68568 * 13 12 11 16 16 C 1.46500 * 120.00246 * 59.99870 * 15 13 12 17 17 C 1.36941 * 119.99890 * 239.99511 * 15 13 12 18 18 H 1.08000 * 119.99920 * 22.06409 * 17 15 13 19 19 C 1.38812 * 120.00086 * 202.06526 * 17 15 13 20 20 N 1.31613 * 119.99971 * 12.42298 * 19 17 15 21 21 Si 1.86802 * 119.99808 * 192.43197 * 19 17 15 22 22 H 1.48492 * 109.47208 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47275 * 119.99798 * 21 19 17 24 24 H 1.48501 * 109.46705 * 239.99731 * 21 19 17 25 25 C 1.46922 * 120.62751 * 179.71752 * 9 7 6 26 26 N 1.30618 * 106.24086 * 359.97438 * 4 3 2 27 27 O 1.20910 * 111.49957 * 359.70312 * 26 4 3 28 28 H 1.08996 * 109.47246 * 89.99997 * 1 2 3 29 29 H 1.09002 * 109.47336 * 330.00210 * 1 2 3 30 30 H 1.09006 * 109.47237 * 210.00418 * 1 2 3 31 31 H 1.08001 * 128.02085 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47246 * 299.99967 * 6 5 4 33 33 H 1.09000 * 109.46810 * 59.99727 * 6 5 4 34 34 H 1.09006 * 109.58824 * 353.36780 * 10 9 7 35 35 H 1.08999 * 109.58711 * 113.65121 * 10 9 7 36 36 H 1.09000 * 109.49952 * 65.30892 * 11 10 9 37 37 H 1.09001 * 109.50128 * 185.40955 * 11 10 9 38 38 H 1.09006 * 109.45630 * 181.38529 * 12 11 10 39 39 H 1.09004 * 109.45695 * 301.33892 * 12 11 10 40 40 H 1.09001 * 109.47426 * 94.30468 * 16 15 13 41 41 H 1.09003 * 109.46793 * 214.30368 * 16 15 13 42 42 H 1.08999 * 109.46787 * 334.29903 * 16 15 13 43 43 H 0.97008 * 119.99879 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.59181 * 246.20214 * 25 9 7 45 45 H 1.09000 * 109.59230 * 6.63589 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6245 0.5356 -0.0006 5 8 4.7953 1.2217 -0.0004 6 6 5.9988 0.4513 -0.0005 7 6 7.1879 1.3770 -0.0009 8 8 7.0213 2.5783 -0.0014 9 7 8.4367 0.8699 -0.0005 10 6 8.6547 -0.5830 -0.0005 11 6 9.5790 -0.9429 1.1669 12 6 10.8624 -0.1147 1.0701 13 6 10.5196 1.3736 1.1665 14 1 10.0079 1.5688 2.1089 15 7 11.7516 2.1640 1.1053 16 6 12.6202 2.0768 -0.0712 17 6 12.0912 2.9845 2.1478 18 1 11.6843 2.8040 3.1318 19 6 12.9583 4.0483 1.9398 20 7 13.2616 4.4202 0.7142 21 14 13.6951 4.9518 3.3993 22 1 13.1987 4.3437 4.6598 23 1 15.1757 4.8491 3.3492 24 1 13.2961 6.3814 3.3492 25 6 9.6059 1.7597 -0.0071 26 7 3.4764 -0.7622 -0.0003 27 8 2.3085 -1.0749 0.0061 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5139 31 1 2.0311 2.1263 -0.0004 32 1 6.0278 -0.1776 0.8892 33 1 6.0278 -0.1771 -0.8907 34 1 7.7001 -1.0958 0.1179 35 1 9.1165 -0.8833 -0.9410 36 1 9.0763 -0.7257 2.1094 37 1 9.8261 -2.0035 1.1218 38 1 11.5324 -0.3866 1.8859 39 1 11.3519 -0.3138 0.1167 40 1 12.3685 2.8756 -0.7688 41 1 13.6608 2.1782 0.2372 42 1 12.4777 1.1116 -0.5572 43 1 13.8673 5.1638 0.5689 44 1 10.1460 1.6466 -0.9471 45 1 9.2792 2.7933 0.1070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027450478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:52 Heat of formation + Delta-G solvation = 26.187924 kcal Electronic energy + Delta-G solvation = -27440.418784 eV Core-core repulsion = 23463.326784 eV Total energy + Delta-G solvation = -3977.092000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.15248 -40.26528 -38.82445 -37.28971 -35.14513 -34.15224 -32.81259 -32.44191 -31.32834 -29.67129 -28.37800 -27.84334 -26.02052 -24.91954 -23.68379 -23.52132 -21.79648 -21.56508 -19.70796 -18.72705 -18.20616 -18.10715 -17.12721 -16.82635 -16.67537 -16.30425 -15.70214 -15.04275 -14.52090 -14.41019 -14.21540 -14.19234 -13.86371 -13.70296 -13.64388 -13.58139 -12.96999 -12.81531 -12.77333 -12.64207 -12.36002 -11.90896 -11.85073 -11.39589 -11.19917 -11.05302 -10.82894 -10.66253 -10.42849 -10.36810 -10.18986 -9.88771 -9.81415 -9.78126 -9.61803 -9.44416 -8.61627 -8.39559 -6.77967 -5.73184 -3.19049 1.11899 2.01649 2.17942 2.63533 2.80068 3.30716 3.39118 3.45875 3.48009 3.92295 4.34157 4.46447 4.48743 4.63255 4.80023 4.83079 4.87049 4.91059 4.94506 5.07201 5.21251 5.24097 5.34447 5.41535 5.47279 5.52750 5.59040 5.70472 5.85179 5.94567 6.07809 6.19459 6.33070 6.44687 6.57447 6.73877 6.76400 6.89743 6.94706 7.37531 7.50991 7.71248 7.81381 7.96994 8.23724 8.38870 9.22524 9.84841 10.32891 11.31659 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.002440 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.222273 B =11473.924726 C =12096.879612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.232 4.232 4 C 0.215 3.785 5 O -0.255 6.255 6 C 0.048 3.952 7 C 0.513 3.487 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.131 4.131 12 C -0.134 4.134 13 C 0.169 3.831 14 H 0.066 0.934 15 N -0.591 5.591 16 C 0.161 3.839 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.099 3.901 26 N -0.413 5.413 27 O 0.097 5.903 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.252 0.748 44 H 0.064 0.936 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.005 -14.244 -3.239 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.160 6.160 6 C -0.031 4.031 7 C 0.298 3.702 8 O -0.393 6.393 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.170 4.170 12 C -0.173 4.173 13 C 0.059 3.941 14 H 0.084 0.916 15 N -0.313 5.313 16 C 0.017 3.983 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.551 5.551 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.024 4.024 26 N -0.141 5.141 27 O 0.037 5.963 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.196 0.804 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.017 -14.133 -3.291 25.540 hybrid contribution 0.375 1.141 0.624 1.353 sum -20.642 -12.992 -2.667 24.536 Atomic orbital electron populations 1.20378 0.83497 1.04933 1.04378 1.24343 0.96471 0.85605 1.01014 1.21827 0.88323 1.01769 1.13477 1.22092 0.88573 0.88007 0.99605 1.86310 1.10017 1.30837 1.88855 1.22584 0.82412 0.93771 1.04309 1.19829 0.83634 0.88795 0.77903 1.90767 1.84992 1.15059 1.48451 1.48225 1.05388 1.07477 1.72611 1.21818 1.00119 0.80163 0.99812 1.21905 0.97065 0.99997 0.98001 1.22099 0.95984 0.96994 1.02251 1.20734 0.87470 0.89895 0.96005 0.91617 1.43967 1.18827 1.49192 1.19307 1.20804 0.94645 0.94315 0.88550 1.19271 1.25221 1.05673 0.88302 0.91283 1.25041 1.01433 0.96803 0.96360 1.70080 1.38013 1.28593 1.18402 0.86155 0.78743 0.79498 0.81981 1.20326 1.21618 1.21676 1.22745 0.84104 0.94960 1.00561 1.74152 0.97896 1.14235 1.27834 1.84782 1.10312 1.31985 1.69213 0.89096 0.88759 0.89540 0.80358 0.88715 0.88843 0.90626 0.90967 0.91645 0.90991 0.91526 0.92130 0.95297 0.93642 0.98232 0.93738 0.91725 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.00 0.38 0.15 16 2 C -0.01 -0.08 7.48 -35.37 -0.26 -0.35 16 3 C -0.23 -2.28 11.11 -39.22 -0.44 -2.71 16 4 C 0.22 2.79 8.01 -16.65 -0.13 2.66 16 5 O -0.26 -3.89 9.74 -38.74 -0.38 -4.26 16 6 C 0.05 0.64 4.49 36.00 0.16 0.80 16 7 C 0.51 8.72 7.77 -10.98 -0.09 8.64 16 8 O -0.52 -11.23 15.91 -14.35 -0.23 -11.46 16 9 N -0.60 -9.55 2.97 -172.48 -0.51 -10.06 16 10 C 0.10 1.21 6.34 -3.71 -0.02 1.19 16 11 C -0.13 -1.59 6.08 -26.61 -0.16 -1.76 16 12 C -0.13 -2.16 5.13 -26.69 -0.14 -2.30 16 13 C 0.17 3.42 2.76 -67.57 -0.19 3.24 16 14 H 0.07 1.42 7.86 -51.93 -0.41 1.01 16 15 N -0.59 -14.67 2.82 -173.07 -0.49 -15.16 16 16 C 0.16 3.90 7.91 59.85 0.47 4.38 16 17 C -0.26 -7.05 9.60 -15.06 -0.14 -7.19 16 18 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 20 N -0.91 -26.61 10.63 55.49 0.59 -26.02 16 21 Si 0.91 22.18 29.57 -169.99 -5.03 17.15 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.10 1.93 5.81 -3.47 -0.02 1.91 16 26 N -0.41 -5.12 11.54 30.38 0.35 -4.77 16 27 O 0.10 1.00 11.19 17.05 0.19 1.19 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 33 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 34 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 40 H 0.03 0.76 7.41 -51.93 -0.39 0.38 16 41 H 0.04 1.19 7.20 -51.93 -0.37 0.82 16 42 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.06 1.25 7.53 -51.93 -0.39 0.86 16 45 H 0.09 2.16 7.00 -51.93 -0.36 1.79 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -34.55 366.64 -7.30 -41.85 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.65 Total: -2.61 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.67 Total: 8.63 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.06 Total: -56.01 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.41 Total: -14.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.55 -7.30 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027450478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.037 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds