Wall clock time and date at job start Tue Mar 31 2020 13:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99874 * 2 1 4 4 H 1.08001 * 119.99988 * 202.06567 * 3 2 1 5 5 C 1.38823 * 119.99977 * 22.07244 * 3 2 1 6 6 N 1.31619 * 119.99871 * 12.39859 * 5 3 2 7 7 Si 1.86797 * 119.99762 * 192.40001 * 5 3 2 8 8 H 1.48495 * 109.47273 * 60.00064 * 7 5 3 9 9 H 1.48504 * 109.46935 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47314 * 299.99704 * 7 5 3 11 11 C 1.46497 * 119.99814 * 180.02562 * 2 1 3 12 12 H 1.09004 * 109.49504 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49850 * 60.00268 * 11 2 1 14 14 C 1.53041 * 109.53541 * 178.65032 * 13 11 2 15 15 C 1.53191 * 109.31345 * 61.36287 * 14 13 11 16 16 N 1.46920 * 108.77632 * 305.36179 * 15 14 13 17 17 C 1.34781 * 120.63518 * 233.58840 * 16 15 14 18 18 O 1.21280 * 120.00012 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99641 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47004 * 180.02562 * 19 17 16 21 21 C 1.50696 * 109.47179 * 180.02562 * 20 19 17 22 22 C 1.33638 * 126.04106 * 89.71304 * 21 20 19 23 23 N 1.31789 * 114.50089 * 179.79137 * 22 21 20 24 24 C 1.29024 * 117.12396 * 0.51912 * 23 22 21 25 25 S 1.70983 * 110.16747 * 359.71583 * 24 23 22 26 26 C 1.46934 * 118.73823 * 53.86090 * 16 15 14 27 27 H 1.08999 * 109.47243 * 274.30394 * 1 2 3 28 28 H 1.09004 * 109.47005 * 34.30459 * 1 2 3 29 29 H 1.08996 * 109.47224 * 154.30247 * 1 2 3 30 30 H 0.96997 * 119.99591 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.46081 * 58.62996 * 13 11 2 32 32 H 1.08999 * 109.45681 * 298.66403 * 13 11 2 33 33 H 1.08995 * 109.49768 * 301.41016 * 14 13 11 34 34 H 1.09004 * 109.49600 * 181.31379 * 14 13 11 35 35 H 1.09006 * 109.58526 * 185.57651 * 15 14 13 36 36 H 1.08998 * 109.58615 * 65.15550 * 15 14 13 37 37 H 1.08993 * 109.47217 * 60.00093 * 19 17 16 38 38 H 1.09002 * 109.46920 * 300.00136 * 19 17 16 39 39 H 1.09002 * 109.47022 * 299.99619 * 20 19 17 40 40 H 1.08993 * 109.47429 * 59.99768 * 20 19 17 41 41 H 1.08004 * 122.75036 * 359.96855 * 22 21 20 42 42 H 1.07999 * 124.91989 * 179.75446 * 24 23 22 43 43 H 1.09005 * 109.58064 * 65.93008 * 26 16 15 44 44 H 1.09002 * 109.58552 * 186.34766 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3514 5 6 1.5318 2.3441 0.4518 6 7 0.3898 2.2700 1.1019 7 14 2.3213 4.0075 0.1369 8 1 2.4585 4.2213 -1.3261 9 1 1.4697 5.0772 0.7164 10 1 3.6637 4.0463 0.7709 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6182 -3.3818 -1.2689 15 6 2.2510 -4.2122 -0.0350 16 7 2.4667 -3.3947 1.1665 17 6 3.2377 -3.8467 2.1754 18 8 3.4076 -3.1624 3.1622 19 6 3.8876 -5.2028 2.0777 20 6 4.7006 -5.4712 3.3457 21 6 5.3511 -6.8271 3.2478 22 6 6.5559 -7.0856 2.7306 23 7 6.9039 -8.3563 2.7644 24 6 6.0554 -9.1853 3.2718 25 16 4.6541 -8.3526 3.7880 26 6 1.8210 -2.0775 1.2500 27 1 -0.3634 0.0771 1.0248 28 1 -0.3633 0.8489 -0.5792 29 1 -0.3633 -0.9260 -0.4456 30 1 -0.0420 3.0793 1.4172 31 1 2.0693 -1.4893 -2.1399 32 1 0.7607 -2.2908 -1.2385 33 1 3.6859 -3.1632 -1.2557 34 1 2.3722 -3.9421 -2.1709 35 1 2.8820 -5.1000 0.0089 36 1 1.2036 -4.5084 -0.0924 37 1 4.5474 -5.2279 1.2105 38 1 3.1182 -5.9676 1.9711 39 1 5.4700 -4.7065 3.4527 40 1 4.0406 -5.4463 4.2127 41 1 7.1935 -6.3159 2.3213 42 1 6.2083 -10.2509 3.3586 43 1 0.7392 -2.2031 1.2954 44 1 2.1681 -1.5563 2.1423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027573740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:19 Heat of formation + Delta-G solvation = 30.006802 kcal Electronic energy + Delta-G solvation = -25010.781986 eV Core-core repulsion = 21476.608456 eV Total energy + Delta-G solvation = -3534.173530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16042 -39.75418 -37.53903 -35.09717 -34.37660 -32.36177 -31.28772 -29.89945 -28.60967 -26.37586 -26.00507 -24.93402 -23.79584 -22.88896 -21.67440 -20.33720 -19.49439 -18.56769 -18.36201 -17.07537 -16.72089 -15.92503 -15.66912 -15.41565 -14.92418 -14.62852 -14.26922 -14.16527 -13.95947 -13.86366 -13.59719 -13.31453 -12.79696 -12.66422 -12.52499 -12.36922 -12.26272 -11.89936 -11.84833 -11.17301 -11.13373 -11.01875 -10.79132 -10.63892 -10.41107 -10.36264 -10.19875 -9.96127 -9.87378 -9.77956 -9.66383 -9.47625 -9.20128 -8.58493 -8.32413 -6.76605 -5.72259 -3.18084 0.39217 1.04497 1.44509 2.53616 2.79638 3.19443 3.40468 3.45211 3.46243 4.04146 4.38215 4.49383 4.70909 4.79650 4.87177 4.95099 5.00137 5.10238 5.17514 5.28646 5.32661 5.43707 5.52107 5.58625 5.73185 5.74528 5.79830 5.89130 5.91353 5.98973 6.11093 6.22028 6.36306 6.48818 6.66509 6.76886 6.91819 6.97476 7.38230 7.38630 7.65710 7.71662 7.81186 8.35917 8.41199 9.23490 9.86086 10.34313 11.32567 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.002489 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.083965 B =11247.645772 C =11605.565628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.509 3.491 18 O -0.542 6.542 19 C -0.134 4.134 20 C -0.029 4.029 21 C -0.206 4.206 22 C 0.028 3.972 23 N -0.470 5.470 24 C 0.011 3.989 25 S 0.119 5.881 26 C 0.098 3.902 27 H 0.028 0.972 28 H 0.044 0.956 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.177 0.823 42 H 0.197 0.803 43 H 0.060 0.940 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -23.389 0.329 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.297 3.703 18 O -0.419 6.419 19 C -0.175 4.175 20 C -0.069 4.069 21 C -0.327 4.327 22 C -0.122 4.122 23 N -0.183 5.183 24 C -0.287 4.287 25 S 0.371 5.629 26 C -0.026 4.026 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.194 0.806 42 H 0.214 0.786 43 H 0.079 0.921 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.478 -23.398 1.196 24.060 hybrid contribution 0.827 1.431 -0.551 1.742 sum 6.305 -21.967 0.645 22.863 Atomic orbital electron populations 1.20794 0.82562 0.95605 0.99308 1.43938 1.01873 1.00042 1.85516 1.19179 0.97847 0.85163 1.36379 0.91432 1.25028 0.97782 0.98545 0.98215 1.70060 1.18292 1.27209 1.39601 0.86310 0.78531 0.83679 0.77862 1.21094 1.21619 1.20910 1.20703 0.96408 0.86161 0.90716 0.91764 1.22094 0.99641 0.94978 1.00632 1.21905 1.01056 0.97303 0.96739 1.21742 1.01311 0.93553 0.84995 1.48320 1.48870 1.19349 1.17479 1.20486 0.78989 0.87987 0.82850 1.90721 1.61536 1.58659 1.30983 1.21708 1.00374 0.95684 0.99690 1.19815 0.99557 0.89458 0.98102 1.26105 0.99423 0.99749 1.07437 1.21831 0.95204 0.92931 1.02238 1.66330 1.32545 1.02534 1.16852 1.28363 0.93464 1.04499 1.02383 1.84149 1.21771 0.99564 1.57445 1.22640 0.96565 0.81001 1.02391 0.95327 0.93703 0.98291 0.93657 0.91702 0.92262 0.91730 0.91264 0.90375 0.91492 0.88622 0.89025 0.88554 0.89516 0.80623 0.78593 0.92123 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.91 59.85 0.47 4.38 16 2 N -0.59 -14.61 2.82 -173.09 -0.49 -15.09 16 3 C -0.26 -7.04 9.60 -15.06 -0.14 -7.18 16 4 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 5 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 6 N -0.91 -26.49 10.63 55.49 0.59 -25.90 16 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.00 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.40 2.75 -67.59 -0.19 3.21 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.28 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 15 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 16 N -0.61 -9.04 2.97 -172.50 -0.51 -9.55 16 17 C 0.51 7.56 7.70 -10.98 -0.08 7.48 16 18 O -0.54 -10.37 15.39 5.56 0.09 -10.29 16 19 C -0.13 -1.32 4.03 -27.88 -0.11 -1.44 16 20 C -0.03 -0.29 5.04 -27.89 -0.14 -0.43 16 21 C -0.21 -1.85 5.85 -35.92 -0.21 -2.06 16 22 C 0.03 0.27 11.25 -19.18 -0.22 0.05 16 23 N -0.47 -4.77 10.54 -15.75 -0.17 -4.93 16 24 C 0.01 0.08 12.23 51.58 0.63 0.71 16 25 S 0.12 0.89 23.22 -107.50 -2.50 -1.61 16 26 C 0.10 1.86 5.81 -3.49 -0.02 1.84 16 27 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 28 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 29 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 38 H 0.09 0.76 7.94 -51.93 -0.41 0.34 16 39 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.20 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.06 1.17 7.53 -51.93 -0.39 0.77 16 44 H 0.09 2.07 7.00 -51.93 -0.36 1.71 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.85 364.05 -9.60 -42.44 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.65 Total: -1.27 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.42 Total: 3.71 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.58 Total: -55.47 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.85 -9.60 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027573740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.450 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds