Wall clock time and date at job start Tue Mar 31 2020 13:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99874 * 2 1 4 4 H 1.08001 * 119.99988 * 202.06567 * 3 2 1 5 5 C 1.38823 * 119.99977 * 22.07244 * 3 2 1 6 6 N 1.31619 * 119.99871 * 12.39859 * 5 3 2 7 7 Si 1.86797 * 119.99762 * 192.40001 * 5 3 2 8 8 H 1.48495 * 109.47273 * 60.00064 * 7 5 3 9 9 H 1.48504 * 109.46935 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47314 * 299.99704 * 7 5 3 11 11 C 1.46497 * 119.99814 * 180.02562 * 2 1 3 12 12 H 1.09004 * 109.49504 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49850 * 60.00268 * 11 2 1 14 14 C 1.53041 * 109.53541 * 178.65032 * 13 11 2 15 15 C 1.53191 * 109.31345 * 61.36287 * 14 13 11 16 16 N 1.46920 * 108.77632 * 305.36179 * 15 14 13 17 17 C 1.34781 * 120.63518 * 233.58840 * 16 15 14 18 18 O 1.21280 * 120.00012 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99641 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47004 * 180.02562 * 19 17 16 21 21 C 1.50696 * 109.47179 * 180.02562 * 20 19 17 22 22 C 1.33638 * 126.04106 * 89.71304 * 21 20 19 23 23 N 1.31789 * 114.50089 * 179.79137 * 22 21 20 24 24 C 1.29024 * 117.12396 * 0.51912 * 23 22 21 25 25 S 1.70983 * 110.16747 * 359.71583 * 24 23 22 26 26 C 1.46934 * 118.73823 * 53.86090 * 16 15 14 27 27 H 1.08999 * 109.47243 * 274.30394 * 1 2 3 28 28 H 1.09004 * 109.47005 * 34.30459 * 1 2 3 29 29 H 1.08996 * 109.47224 * 154.30247 * 1 2 3 30 30 H 0.96997 * 119.99591 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.46081 * 58.62996 * 13 11 2 32 32 H 1.08999 * 109.45681 * 298.66403 * 13 11 2 33 33 H 1.08995 * 109.49768 * 301.41016 * 14 13 11 34 34 H 1.09004 * 109.49600 * 181.31379 * 14 13 11 35 35 H 1.09006 * 109.58526 * 185.57651 * 15 14 13 36 36 H 1.08998 * 109.58615 * 65.15550 * 15 14 13 37 37 H 1.08993 * 109.47217 * 60.00093 * 19 17 16 38 38 H 1.09002 * 109.46920 * 300.00136 * 19 17 16 39 39 H 1.09002 * 109.47022 * 299.99619 * 20 19 17 40 40 H 1.08993 * 109.47429 * 59.99768 * 20 19 17 41 41 H 1.08004 * 122.75036 * 359.96855 * 22 21 20 42 42 H 1.07999 * 124.91989 * 179.75446 * 24 23 22 43 43 H 1.09005 * 109.58064 * 65.93008 * 26 16 15 44 44 H 1.09002 * 109.58552 * 186.34766 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3514 5 6 1.5318 2.3441 0.4518 6 7 0.3898 2.2700 1.1019 7 14 2.3213 4.0075 0.1369 8 1 2.4585 4.2213 -1.3261 9 1 1.4697 5.0772 0.7164 10 1 3.6637 4.0463 0.7709 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6182 -3.3818 -1.2689 15 6 2.2510 -4.2122 -0.0350 16 7 2.4667 -3.3947 1.1665 17 6 3.2377 -3.8467 2.1754 18 8 3.4076 -3.1624 3.1622 19 6 3.8876 -5.2028 2.0777 20 6 4.7006 -5.4712 3.3457 21 6 5.3511 -6.8271 3.2478 22 6 6.5559 -7.0856 2.7306 23 7 6.9039 -8.3563 2.7644 24 6 6.0554 -9.1853 3.2718 25 16 4.6541 -8.3526 3.7880 26 6 1.8210 -2.0775 1.2500 27 1 -0.3634 0.0771 1.0248 28 1 -0.3633 0.8489 -0.5792 29 1 -0.3633 -0.9260 -0.4456 30 1 -0.0420 3.0793 1.4172 31 1 2.0693 -1.4893 -2.1399 32 1 0.7607 -2.2908 -1.2385 33 1 3.6859 -3.1632 -1.2557 34 1 2.3722 -3.9421 -2.1709 35 1 2.8820 -5.1000 0.0089 36 1 1.2036 -4.5084 -0.0924 37 1 4.5474 -5.2279 1.2105 38 1 3.1182 -5.9676 1.9711 39 1 5.4700 -4.7065 3.4527 40 1 4.0406 -5.4463 4.2127 41 1 7.1935 -6.3159 2.3213 42 1 6.2083 -10.2509 3.3586 43 1 0.7392 -2.2031 1.2954 44 1 2.1681 -1.5563 2.1423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027573740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:18 Heat of formation + Delta-G solvation = 9.312127 kcal Electronic energy + Delta-G solvation = -25011.679374 eV Core-core repulsion = 21476.608456 eV Total energy + Delta-G solvation = -3535.070918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28686 -40.50966 -38.95993 -36.76912 -35.23208 -33.94216 -32.80161 -31.03833 -29.89251 -28.06630 -27.23513 -25.97685 -25.28557 -23.94102 -23.03800 -21.07417 -20.85776 -19.79820 -19.06383 -18.77067 -18.10034 -17.02997 -16.85971 -16.74028 -16.23946 -15.73103 -15.36382 -15.31131 -15.22013 -14.88823 -14.75277 -14.56151 -14.38162 -13.88110 -13.74046 -13.64137 -13.40768 -13.18101 -12.88938 -12.78950 -12.62522 -12.48172 -12.21967 -12.16648 -12.06763 -11.85169 -11.73291 -11.63706 -11.39086 -10.84836 -10.65114 -10.56936 -10.17529 -9.84901 -9.66883 -8.77691 -7.85163 -5.33168 -0.22037 0.45145 0.84254 1.43824 1.45879 1.52688 1.64212 1.86589 2.04859 2.49554 3.28112 3.39118 3.58344 3.62403 3.92191 3.98145 4.01407 4.07239 4.14777 4.21534 4.32323 4.38901 4.42126 4.50252 4.56183 4.65494 4.74109 4.80117 4.91128 4.95396 4.99102 5.05279 5.07596 5.17603 5.24016 5.26468 5.43040 5.51358 5.56948 5.61738 5.70861 6.30578 6.50010 6.77646 7.12754 7.20542 7.85199 8.27299 9.17488 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.002489 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.083965 B =11247.645772 C =11605.565628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.275 1.275 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.167 3.833 12 H 0.044 0.956 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.102 3.898 16 N -0.607 5.607 17 C 0.503 3.497 18 O -0.595 6.595 19 C -0.119 4.119 20 C -0.023 4.023 21 C -0.219 4.219 22 C 0.023 3.977 23 N -0.503 5.503 24 C 0.016 3.984 25 S 0.148 5.852 26 C 0.114 3.886 27 H -0.002 1.002 28 H 0.017 0.983 29 H 0.036 0.964 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.182 0.818 42 H 0.227 0.773 43 H 0.057 0.943 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.583 -26.698 -1.286 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.084 0.916 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.200 1.200 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.062 0.938 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.340 5.340 17 C 0.293 3.707 18 O -0.476 6.476 19 C -0.159 4.159 20 C -0.064 4.064 21 C -0.340 4.340 22 C -0.128 4.128 23 N -0.216 5.216 24 C -0.281 4.281 25 S 0.400 5.600 26 C -0.012 4.012 27 H 0.016 0.984 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.199 0.801 42 H 0.243 0.757 43 H 0.075 0.925 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.159 -26.771 -0.458 27.474 hybrid contribution 0.652 2.347 -0.010 2.436 sum 6.811 -24.425 -0.468 25.361 Atomic orbital electron populations 1.20489 0.82544 0.96186 0.97250 1.44173 1.02206 1.01077 1.85807 1.19498 0.97938 0.86643 1.35515 0.91566 1.25806 0.98578 1.01910 0.98586 1.70232 1.19668 1.27540 1.40983 0.85307 0.77496 0.79422 0.78010 1.20049 1.21901 1.20564 1.20868 0.94759 0.85160 0.93259 0.93801 1.21933 1.00576 0.96496 0.97295 1.21893 1.00182 0.95212 0.98874 1.22119 1.03426 0.93907 0.82426 1.48375 1.48400 1.17991 1.19218 1.21438 0.78154 0.89368 0.81743 1.90703 1.63217 1.60548 1.33159 1.21706 1.01041 0.92557 1.00589 1.19645 0.98994 0.89921 0.97793 1.25935 0.99725 0.99905 1.08477 1.21987 0.95410 0.93171 1.02213 1.66383 1.33726 1.02986 1.18534 1.28931 0.92950 1.05662 1.00515 1.84067 1.21071 0.98174 1.56642 1.22028 0.96323 0.83196 0.99616 0.98392 0.96388 0.94596 0.94242 0.92704 0.91880 0.91828 0.87452 0.86217 0.89844 0.86094 0.86183 0.89969 0.90746 0.80137 0.75657 0.92477 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.95 7.91 127.77 1.01 9.96 16 2 N -0.61 -31.02 2.82 -701.52 -1.98 -32.99 16 3 C -0.27 -15.05 9.60 84.04 0.81 -14.25 16 4 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 5 C -0.05 -3.10 5.11 84.86 0.43 -2.67 16 6 N -0.94 -56.97 10.63 21.65 0.23 -56.74 16 7 Si 0.97 46.41 29.57 68.60 2.03 48.44 16 8 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 C 0.17 6.80 2.75 45.21 0.12 6.92 16 12 H 0.04 1.93 7.86 -2.38 -0.02 1.91 16 13 C -0.12 -3.73 5.13 30.62 0.16 -3.58 16 14 C -0.12 -2.42 6.08 30.67 0.19 -2.24 16 15 C 0.10 1.82 6.34 86.36 0.55 2.36 16 16 N -0.61 -17.29 2.97 -818.05 -2.43 -19.72 16 17 C 0.50 14.55 7.70 87.66 0.67 15.23 16 18 O -0.60 -23.71 15.39 -3.03 -0.05 -23.76 16 19 C -0.12 -2.02 4.03 29.85 0.12 -1.90 16 20 C -0.02 -0.43 5.04 29.85 0.15 -0.28 16 21 C -0.22 -3.51 5.85 24.64 0.14 -3.37 16 22 C 0.02 0.39 11.25 83.65 0.94 1.33 16 23 N -0.50 -9.12 10.54 -203.74 -2.15 -11.27 16 24 C 0.02 0.20 12.23 130.65 1.60 1.80 16 25 S 0.15 1.81 23.22 -56.49 -1.31 0.50 16 26 C 0.11 4.44 5.81 86.50 0.50 4.94 16 27 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 28 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 29 H 0.04 1.48 6.46 -2.39 -0.02 1.46 16 30 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.86 6.72 -2.39 -0.02 1.84 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.12 1.22 5.93 -2.38 -0.01 1.21 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.52 7.69 -2.39 -0.02 1.50 16 38 H 0.12 1.43 7.94 -2.39 -0.02 1.41 16 39 H 0.08 1.74 8.10 -2.39 -0.02 1.73 16 40 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.23 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.06 2.24 7.53 -2.38 -0.02 2.22 16 44 H 0.04 2.08 7.00 -2.39 -0.02 2.07 16 Total: -1.00 -76.85 364.05 2.74 -74.11 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.99 Total: 7.17 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.40 Total: 14.27 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.32 Total: -120.72 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.31 Total: 0.50 kcal Total: -76.85 2.74 -74.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027573740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.419 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds