Wall clock time and date at job start Tue Mar 31 2020 13:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36946 * 119.99593 * 2 1 4 4 H 1.08001 * 119.99288 * 144.56555 * 3 2 1 5 5 C 1.38807 * 120.00243 * 324.57380 * 3 2 1 6 6 N 1.31614 * 120.00314 * 157.65440 * 5 3 2 7 7 Si 1.86801 * 119.99758 * 337.65078 * 5 3 2 8 8 H 1.48501 * 109.47160 * 95.56650 * 7 5 3 9 9 H 1.48504 * 109.46992 * 215.56190 * 7 5 3 10 10 H 1.48498 * 109.47384 * 335.56396 * 7 5 3 11 11 C 1.46492 * 120.00351 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.49954 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49903 * 59.99805 * 11 2 1 14 14 C 1.53044 * 109.54025 * 178.65243 * 13 11 2 15 15 C 1.53194 * 109.31133 * 61.35958 * 14 13 11 16 16 N 1.46923 * 108.77869 * 305.36830 * 15 14 13 17 17 C 1.34780 * 120.63001 * 233.58489 * 16 15 14 18 18 O 1.21280 * 119.99784 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99728 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46473 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46767 * 179.97438 * 20 19 17 22 22 N 1.29035 * 124.91087 * 89.99891 * 21 20 19 23 23 C 1.31781 * 117.12038 * 179.97438 * 22 21 20 24 24 C 1.33632 * 114.50369 * 0.02562 * 23 22 21 25 25 S 1.70970 * 124.92221 * 270.31876 * 21 20 19 26 26 C 1.46926 * 118.73769 * 53.85879 * 16 15 14 27 27 H 1.09000 * 109.46780 * 268.02070 * 1 2 3 28 28 H 1.08994 * 109.47963 * 28.02037 * 1 2 3 29 29 H 1.09003 * 109.47267 * 148.02744 * 1 2 3 30 30 H 0.96995 * 120.00337 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46129 * 58.62928 * 13 11 2 32 32 H 1.08999 * 109.44494 * 298.66217 * 13 11 2 33 33 H 1.09005 * 109.49772 * 301.41570 * 14 13 11 34 34 H 1.08992 * 109.50025 * 181.31693 * 14 13 11 35 35 H 1.08998 * 109.58311 * 185.57590 * 15 14 13 36 36 H 1.08999 * 109.58426 * 65.15588 * 15 14 13 37 37 H 1.08998 * 109.47134 * 60.00204 * 19 17 16 38 38 H 1.09001 * 109.47098 * 299.99636 * 19 17 16 39 39 H 1.08998 * 109.47113 * 60.00389 * 20 19 17 40 40 H 1.08992 * 109.47338 * 300.00007 * 20 19 17 41 41 H 1.08003 * 122.74371 * 180.02562 * 23 22 21 42 42 H 1.08000 * 126.03889 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.58355 * 65.93239 * 26 16 15 44 44 H 1.08999 * 109.58319 * 186.35170 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0796 1.2726 0.5423 5 6 1.6483 2.2769 -0.6968 6 7 2.0215 3.4955 -0.3685 7 14 0.4440 2.0151 -2.1006 8 1 -0.9446 2.1640 -1.5958 9 1 0.6952 3.0223 -3.1625 10 1 0.6240 0.6511 -2.6594 11 6 2.1975 -1.2686 -0.0006 12 1 3.2693 -1.0699 0.0000 13 6 1.8283 -2.0711 -1.2502 14 6 2.6183 -3.3818 -1.2689 15 6 2.2512 -4.2121 -0.0349 16 7 2.4669 -3.3945 1.1666 17 6 3.2379 -3.8465 2.1755 18 8 3.4086 -3.1619 3.1619 19 6 3.8888 -5.2022 2.0772 20 6 4.7027 -5.4701 3.3448 21 6 5.3532 -6.8260 3.2470 22 7 6.5212 -7.0503 2.7466 23 6 6.9415 -8.2992 2.7386 24 6 6.0801 -9.1773 3.2608 25 16 4.6472 -8.2906 3.7756 26 6 1.8212 -2.0774 1.2501 27 1 -0.3633 -0.0355 1.0271 28 1 -0.3635 0.9071 -0.4827 29 1 -0.3634 -0.8718 -0.5442 30 1 1.6709 4.2578 -0.8552 31 1 2.0692 -1.4892 -2.1398 32 1 0.7607 -2.2908 -1.2381 33 1 3.6861 -3.1632 -1.2557 34 1 2.3723 -3.9421 -2.1708 35 1 2.8822 -5.0998 0.0090 36 1 1.2038 -4.5083 -0.0922 37 1 4.5489 -5.2263 1.2102 38 1 3.1200 -5.9675 1.9701 39 1 4.0430 -5.4458 4.2121 40 1 5.4714 -4.7048 3.4515 41 1 7.9035 -8.5893 2.3425 42 1 6.2334 -10.2428 3.3480 43 1 0.7394 -2.2031 1.2956 44 1 2.1683 -1.5562 2.1422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027687184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:31 Heat of formation + Delta-G solvation = 36.300346 kcal Electronic energy + Delta-G solvation = -25057.698357 eV Core-core repulsion = 21523.797736 eV Total energy + Delta-G solvation = -3533.900621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25896 -39.80900 -37.67595 -35.29199 -34.14832 -32.37106 -31.55277 -30.26941 -29.29230 -26.72955 -26.16226 -24.95514 -23.90905 -22.95829 -21.73849 -20.23293 -19.57169 -18.68645 -18.35457 -17.05709 -16.79530 -15.91870 -15.83803 -15.70399 -15.34150 -14.66458 -14.57435 -14.18069 -14.03047 -13.84947 -13.67081 -13.36110 -12.94893 -12.62522 -12.52219 -12.48179 -12.30924 -12.25275 -12.13408 -11.84199 -11.39069 -11.29236 -11.04171 -10.71391 -10.49707 -10.38907 -10.12792 -9.95115 -9.94564 -9.76942 -9.68111 -9.52868 -9.20504 -8.68816 -8.35191 -6.87053 -5.98809 -3.39533 0.36002 1.02434 1.41889 2.50231 2.71086 3.08542 3.30004 3.45419 3.49913 3.82499 4.43959 4.51186 4.67747 4.77503 4.80843 4.86826 4.91683 5.05695 5.13310 5.13811 5.21484 5.27311 5.34189 5.46801 5.57327 5.63459 5.76060 5.77752 5.85185 5.87834 5.99782 6.10036 6.20716 6.31409 6.37671 6.50044 6.58769 6.70268 6.84282 6.88211 7.42459 7.54174 8.02693 8.27087 8.37767 8.96452 9.70117 10.08102 11.16768 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029939 B = 0.002481 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.017681 B =11283.479276 C =11506.611789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.081 0.919 5 C 0.032 3.968 6 N -0.900 5.900 7 Si 0.885 3.115 8 H -0.288 1.288 9 H -0.304 1.304 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.138 4.138 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.514 3.486 18 O -0.540 6.540 19 C -0.132 4.132 20 C -0.031 4.031 21 C 0.058 3.942 22 N -0.473 5.473 23 C 0.040 3.960 24 C -0.265 4.265 25 S 0.118 5.882 26 C 0.099 3.901 27 H 0.017 0.983 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.061 0.939 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -27.767 3.455 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.325 5.325 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.168 4.168 6 N -0.541 5.541 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.302 3.698 18 O -0.417 6.417 19 C -0.174 4.174 20 C -0.072 4.072 21 C -0.220 4.220 22 N -0.188 5.188 23 C -0.111 4.111 24 C -0.404 4.404 25 S 0.372 5.628 26 C -0.024 4.024 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.193 0.807 42 H 0.194 0.806 43 H 0.079 0.921 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.575 -27.012 4.220 27.460 hybrid contribution 0.111 -0.441 -1.390 1.463 sum 2.686 -27.453 2.829 27.729 Atomic orbital electron populations 1.21337 0.84973 0.99014 0.98277 1.44045 1.00468 1.01582 1.86442 1.18823 1.08053 0.86299 1.26508 0.90158 1.25428 0.98285 0.95175 0.97898 1.69870 1.46177 0.97641 1.40416 0.86835 0.80369 0.77559 0.83612 1.21616 1.23199 1.19465 1.20816 0.97070 0.85565 0.90598 0.90672 1.22151 0.99430 0.95226 1.00997 1.21918 1.01310 0.97128 0.96749 1.21767 1.01349 0.93617 0.84875 1.48171 1.49026 1.19147 1.17648 1.20391 0.78720 0.87939 0.82781 1.90723 1.61354 1.58578 1.31030 1.21656 1.00224 0.95780 0.99729 1.20036 0.99504 0.89228 0.98431 1.27196 0.93930 1.00591 1.00263 1.66320 1.12950 1.21631 1.17857 1.21859 1.01582 0.86606 1.01028 1.27098 0.97788 1.05335 1.10208 1.84109 1.19787 1.00998 1.57904 1.22416 0.96491 0.81540 1.01988 0.96528 0.93662 0.95089 0.92690 0.91399 0.92505 0.91421 0.91191 0.90205 0.91421 0.88181 0.88877 0.88640 0.87613 0.80722 0.80617 0.92086 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.33 8.45 59.85 0.51 2.84 16 2 N -0.60 -14.14 2.42 -173.10 -0.42 -14.56 16 3 C -0.27 -7.54 9.85 -15.06 -0.15 -7.68 16 4 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 5 C 0.03 0.94 5.31 -17.43 -0.09 0.85 16 6 N -0.90 -27.67 13.97 55.49 0.78 -26.90 16 7 Si 0.89 22.20 24.94 -169.99 -4.24 17.96 16 8 H -0.29 -7.04 6.67 56.52 0.38 -6.66 16 9 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.17 3.24 2.76 -67.59 -0.19 3.05 16 12 H 0.08 1.58 7.89 -51.92 -0.41 1.17 16 13 C -0.14 -2.23 5.11 -26.69 -0.14 -2.36 16 14 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 15 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 16 N -0.61 -8.47 2.97 -172.50 -0.51 -8.98 16 17 C 0.51 7.25 7.70 -10.98 -0.08 7.16 16 18 O -0.54 -9.76 15.39 5.56 0.09 -9.68 16 19 C -0.13 -1.30 4.03 -27.88 -0.11 -1.41 16 20 C -0.03 -0.31 5.09 -27.88 -0.14 -0.46 16 21 C 0.06 0.57 6.64 -13.45 -0.09 0.48 16 22 N -0.47 -5.17 10.54 -11.86 -0.13 -5.30 16 23 C 0.04 0.34 11.35 -19.19 -0.22 0.12 16 24 C -0.27 -1.83 11.37 29.12 0.33 -1.49 16 25 S 0.12 0.90 23.18 -107.50 -2.49 -1.60 16 26 C 0.10 1.71 5.81 -3.49 -0.02 1.69 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 1.06 3.08 -51.93 -0.16 0.90 16 29 H 0.03 0.57 6.46 -51.93 -0.34 0.24 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.88 6.73 -51.93 -0.35 0.53 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.92 7.69 -51.93 -0.40 0.53 16 38 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 39 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.18 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 44 H 0.09 1.89 7.00 -51.93 -0.36 1.52 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -33.68 359.82 -8.59 -42.27 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.51 Total: -0.81 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.58 Total: 2.16 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.28 Total: -55.73 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.24 Total: 17.96 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.68 -8.59 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027687184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.573 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds