Wall clock time and date at job start Tue Mar 31 2020 13:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00259 * 2 1 4 4 H 1.07995 * 120.00255 * 201.99315 * 3 2 1 5 5 C 1.38815 * 119.99626 * 21.99684 * 3 2 1 6 6 N 1.31620 * 120.00046 * 12.67715 * 5 3 2 7 7 Si 1.86798 * 119.99795 * 192.67658 * 5 3 2 8 8 H 1.48502 * 109.47095 * 59.99838 * 7 5 3 9 9 H 1.48495 * 109.47277 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47064 * 299.99886 * 7 5 3 11 11 C 1.46503 * 120.00066 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52638 * 179.91708 * 11 2 1 13 13 C 1.53043 * 109.49733 * 300.00510 * 11 2 1 14 14 C 1.53042 * 109.53824 * 181.31852 * 13 11 2 15 15 C 1.53199 * 109.30913 * 298.63060 * 14 13 11 16 16 N 1.46926 * 108.77713 * 54.63609 * 15 14 13 17 17 C 1.34774 * 120.63203 * 126.41555 * 16 15 14 18 18 O 1.21276 * 119.99981 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99759 * 359.97438 * 17 16 15 20 20 C 1.53005 * 109.46977 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.46977 * 179.97438 * 20 19 17 22 22 N 1.29028 * 124.91446 * 89.99735 * 21 20 19 23 23 C 1.31780 * 117.12328 * 179.97438 * 22 21 20 24 24 C 1.33639 * 114.50106 * 0.02562 * 23 22 21 25 25 S 1.70973 * 124.91636 * 269.69278 * 21 20 19 26 26 C 1.46929 * 118.73868 * 306.39127 * 16 15 14 27 27 H 1.08996 * 109.47574 * 274.33324 * 1 2 3 28 28 H 1.09007 * 109.47141 * 34.33567 * 1 2 3 29 29 H 1.09001 * 109.47320 * 154.33697 * 1 2 3 30 30 H 0.97005 * 119.99826 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.45339 * 301.33330 * 13 11 2 32 32 H 1.09001 * 109.46363 * 61.29259 * 13 11 2 33 33 H 1.08997 * 109.50266 * 58.57937 * 14 13 11 34 34 H 1.08995 * 109.49869 * 178.64976 * 14 13 11 35 35 H 1.08998 * 109.58498 * 174.42428 * 15 14 13 36 36 H 1.09005 * 109.58343 * 294.84993 * 15 14 13 37 37 H 1.09000 * 109.47332 * 300.00370 * 19 17 16 38 38 H 1.08999 * 109.47236 * 60.00373 * 19 17 16 39 39 H 1.08995 * 109.46757 * 299.99955 * 20 19 17 40 40 H 1.08999 * 109.47089 * 59.99969 * 20 19 17 41 41 H 1.08001 * 122.75178 * 180.02562 * 23 22 21 42 42 H 1.08001 * 126.04134 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.58837 * 293.82133 * 26 16 15 44 44 H 1.08996 * 109.58741 * 173.39814 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1707 1.2199 -0.3502 5 6 1.5314 2.3442 0.4503 6 7 0.3913 2.2703 1.1040 7 14 2.3173 4.0080 0.1285 8 1 2.4499 4.2180 -1.3356 9 1 1.4652 5.0781 0.7063 10 1 3.6614 4.0506 0.7585 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0706 -0.0020 13 6 1.8281 -2.0724 1.2484 14 6 2.6175 -3.3834 1.2655 15 6 2.2495 -4.2124 0.0308 16 7 2.4653 -3.3937 -1.1700 17 6 3.2357 -3.8451 -2.1796 18 8 3.4056 -3.1599 -3.1657 19 6 3.8858 -5.2011 -2.0829 20 6 4.6992 -5.4682 -3.3511 21 6 5.3499 -6.8240 -3.2542 22 7 4.8194 -7.9284 -3.6588 23 6 5.5268 -9.0287 -3.4990 24 6 6.7202 -8.8422 -2.9273 25 16 6.9010 -7.1205 -2.5990 26 6 1.8247 -2.0738 -1.2496 27 1 -0.3634 0.0776 1.0247 28 1 -0.3634 0.8486 -0.5797 29 1 -0.3634 -0.9263 -0.4451 30 1 -0.0409 3.0798 1.4183 31 1 2.0697 -1.4915 2.1385 32 1 0.7604 -2.2915 1.2367 33 1 3.6854 -3.1654 1.2522 34 1 2.3719 -3.9443 2.1672 35 1 2.8800 -5.1004 -0.0142 36 1 1.2019 -4.5080 0.0882 37 1 4.5462 -5.2266 -1.2161 38 1 3.1167 -5.9661 -1.9764 39 1 4.0392 -5.4427 -4.2181 40 1 5.4683 -4.7032 -3.4573 41 1 5.1712 -10.0015 -3.8050 42 1 7.4473 -9.6104 -2.7090 43 1 0.7425 -2.1950 -1.2967 44 1 2.1749 -1.5507 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027687185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:34 Heat of formation + Delta-G solvation = 31.256906 kcal Electronic energy + Delta-G solvation = -24980.423919 eV Core-core repulsion = 21446.304597 eV Total energy + Delta-G solvation = -3534.119321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21289 -39.77211 -37.53758 -35.09656 -34.11700 -32.31573 -31.32466 -30.09974 -28.76391 -26.64152 -25.99172 -24.85820 -23.74429 -22.91767 -21.62914 -20.21981 -19.50750 -18.56088 -18.34082 -17.02134 -16.69453 -15.88852 -15.73078 -15.64253 -14.98342 -14.61891 -14.32277 -14.09767 -14.03821 -13.77927 -13.40753 -13.17779 -12.96020 -12.67233 -12.47027 -12.32022 -12.21959 -11.91101 -11.81221 -11.36628 -11.04417 -10.93312 -10.84241 -10.63472 -10.41645 -10.30504 -10.13679 -9.94162 -9.87443 -9.81489 -9.72330 -9.58558 -9.18375 -8.60257 -8.33421 -6.75494 -5.71149 -3.16869 0.37725 1.04619 1.44399 2.51129 2.76061 3.14723 3.41044 3.46047 3.48155 3.84479 4.47614 4.50826 4.72373 4.80947 4.88593 4.90038 4.99713 5.14354 5.16354 5.29309 5.31690 5.45453 5.54186 5.58718 5.60392 5.76501 5.79786 5.86384 5.88872 5.99906 6.15924 6.23226 6.38253 6.51622 6.65561 6.79473 6.94269 7.00450 7.39928 7.43135 7.61600 7.73287 7.82660 8.32020 8.41517 9.24696 9.87415 10.35440 11.33648 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.002478 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.246919 B =11295.349152 C =11681.014453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.133 4.133 15 C 0.107 3.893 16 N -0.605 5.605 17 C 0.513 3.487 18 O -0.543 6.543 19 C -0.132 4.132 20 C -0.030 4.030 21 C 0.057 3.943 22 N -0.475 5.475 23 C 0.039 3.961 24 C -0.266 4.266 25 S 0.123 5.877 26 C 0.096 3.904 27 H 0.029 0.971 28 H 0.044 0.956 29 H -0.002 1.002 30 H 0.253 0.747 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.063 0.937 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -23.101 -3.425 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.338 5.338 17 C 0.301 3.699 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.072 4.072 21 C -0.221 4.221 22 N -0.189 5.189 23 C -0.112 4.112 24 C -0.405 4.405 25 S 0.377 5.623 26 C -0.028 4.028 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.192 0.808 42 H 0.194 0.806 43 H 0.081 0.919 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.847 -21.917 -3.687 24.309 hybrid contribution 0.008 -0.121 -0.145 0.189 sum 9.855 -22.038 -3.832 24.444 Atomic orbital electron populations 1.20790 0.82577 0.95520 0.99329 1.43885 1.01841 1.00027 1.85709 1.19189 0.97744 0.85237 1.36216 0.91432 1.24989 0.97796 0.98440 0.98385 1.70065 1.18470 1.27110 1.39696 0.86320 0.78398 0.83710 0.78028 1.21034 1.21664 1.20974 1.20575 0.96399 0.86244 0.90738 0.91752 1.22126 0.99434 0.94661 1.00998 1.21938 1.01088 0.97496 0.96623 1.21771 1.01424 0.93495 0.84922 1.48194 1.48961 1.19031 1.17603 1.20377 0.78878 0.87853 0.82804 1.90709 1.61660 1.58637 1.31033 1.21653 1.00664 0.96082 0.98994 1.20031 0.99789 0.87828 0.99508 1.27193 0.95619 0.98845 1.00409 1.66312 1.35161 0.97771 1.19689 1.21842 0.91136 0.97920 1.00288 1.27109 1.03523 0.99307 1.10567 1.84176 1.18435 1.02216 1.57481 1.22435 0.96886 0.81371 1.02064 0.95232 0.93767 0.98372 0.93732 0.91472 0.92456 0.91762 0.91284 0.90367 0.91381 0.88735 0.88367 0.87768 0.88585 0.80775 0.80624 0.91860 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 8.03 59.84 0.48 4.42 16 2 N -0.59 -14.67 2.82 -173.34 -0.49 -15.15 16 3 C -0.25 -7.00 9.60 -15.06 -0.14 -7.15 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.34 10.64 55.49 0.59 -25.75 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 8 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.17 3.41 2.74 -67.80 -0.19 3.22 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 13 C -0.13 -2.26 5.15 -26.69 -0.14 -2.40 16 14 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 15 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 16 N -0.60 -8.86 2.97 -172.76 -0.51 -9.37 16 17 C 0.51 7.47 7.70 -10.99 -0.08 7.39 16 18 O -0.54 -9.99 15.39 5.56 0.09 -9.90 16 19 C -0.13 -1.35 4.03 -27.88 -0.11 -1.46 16 20 C -0.03 -0.32 5.09 -27.88 -0.14 -0.46 16 21 C 0.06 0.57 6.64 -13.46 -0.09 0.48 16 22 N -0.47 -5.16 10.54 -11.86 -0.13 -5.29 16 23 C 0.04 0.33 11.35 -19.19 -0.22 0.11 16 24 C -0.27 -1.88 11.37 29.12 0.33 -1.55 16 25 S 0.12 0.98 23.18 -107.50 -2.49 -1.51 16 26 C 0.10 1.75 5.78 -3.70 -0.02 1.72 16 27 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 28 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 29 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 38 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.06 1.15 6.49 -51.93 -0.34 0.82 16 44 H 0.09 1.88 7.00 -51.93 -0.36 1.51 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.42 364.05 -9.72 -42.14 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.64 Total: -1.35 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.60 Total: 3.67 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.54 Total: -55.57 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.42 -9.72 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027687185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.398 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds