Wall clock time and date at job start Tue Mar 31 2020 13:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00005 * 2 1 4 4 H 1.07999 * 119.99757 * 202.07139 * 3 2 1 5 5 C 1.38809 * 119.99738 * 22.06604 * 3 2 1 6 6 N 1.31620 * 120.00400 * 12.40501 * 5 3 2 7 7 Si 1.86802 * 119.99719 * 192.40334 * 5 3 2 8 8 H 1.48497 * 109.46901 * 90.00356 * 7 5 3 9 9 H 1.48498 * 109.47026 * 209.99981 * 7 5 3 10 10 H 1.48493 * 109.47210 * 330.00240 * 7 5 3 11 11 C 1.46504 * 120.00073 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.52109 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49576 * 60.00481 * 11 2 1 14 14 C 1.53033 * 109.53729 * 178.68379 * 13 11 2 15 15 C 1.53188 * 109.31858 * 61.36123 * 14 13 11 16 16 N 1.46930 * 108.77546 * 305.36793 * 15 14 13 17 17 C 1.34774 * 120.63104 * 233.58450 * 16 15 14 18 18 O 1.21278 * 120.00092 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99867 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46752 * 179.97438 * 20 19 17 22 22 C 1.33636 * 122.74960 * 124.73111 * 21 20 19 23 23 S 1.76200 * 107.92444 * 179.97438 * 22 21 20 24 24 C 1.70981 * 90.28092 * 0.27635 * 23 22 21 25 25 N 1.29024 * 110.16895 * 359.83732 * 24 23 22 26 26 C 1.46922 * 118.73898 * 53.60363 * 16 15 14 27 27 H 1.09001 * 109.46723 * 274.30758 * 1 2 3 28 28 H 1.09000 * 109.47342 * 34.30722 * 1 2 3 29 29 H 1.09002 * 109.47095 * 154.31171 * 1 2 3 30 30 H 0.96997 * 120.00263 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.45432 * 298.69915 * 13 11 2 32 32 H 1.08997 * 109.46161 * 58.65497 * 13 11 2 33 33 H 1.09003 * 109.49629 * 181.31636 * 14 13 11 34 34 H 1.09001 * 109.49491 * 301.37521 * 14 13 11 35 35 H 1.09009 * 109.58598 * 65.15038 * 15 14 13 36 36 H 1.08997 * 109.59440 * 185.57671 * 15 14 13 37 37 H 1.08999 * 109.46841 * 299.99658 * 19 17 16 38 38 H 1.08995 * 109.47231 * 60.00128 * 19 17 16 39 39 H 1.08999 * 109.46989 * 299.99349 * 20 19 17 40 40 H 1.08995 * 109.47326 * 59.99968 * 20 19 17 41 41 H 1.07997 * 126.03777 * 0.03714 * 22 21 20 42 42 H 1.08004 * 124.91420 * 179.83716 * 24 23 22 43 43 H 1.09001 * 109.59116 * 186.60626 * 26 16 15 44 44 H 1.08998 * 109.59005 * 66.18226 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4516 6 7 0.3898 2.2701 1.1018 7 14 2.3213 4.0075 0.1367 8 1 1.8346 4.5492 -1.1575 9 1 1.9594 4.9425 1.2321 10 1 3.7973 3.8531 0.0850 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3832 -1.2656 15 6 2.2497 -4.2123 -0.0311 16 7 2.4654 -3.3937 1.1698 17 6 3.2358 -3.8451 2.1793 18 8 3.4065 -3.1596 3.1651 19 6 3.8853 -5.2016 2.0831 20 6 4.6978 -5.4691 3.3516 21 6 5.3467 -6.8259 3.2556 22 6 6.6634 -7.0088 3.3925 23 16 6.9934 -8.7302 3.2114 24 6 5.3290 -9.0316 2.9616 25 7 4.6629 -7.9284 3.0236 26 6 1.8248 -2.0739 1.2494 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3633 -0.9261 -0.4455 30 1 -0.0417 3.0793 1.4177 31 1 0.7606 -2.2914 -1.2368 32 1 2.0698 -1.4913 -2.1386 33 1 2.3716 -3.9443 -2.1672 34 1 3.6855 -3.1651 -1.2529 35 1 1.2021 -4.5080 -0.0884 36 1 2.8802 -5.1003 0.0139 37 1 3.1156 -5.9662 1.9770 38 1 4.5453 -5.2278 1.2161 39 1 5.4674 -4.7046 3.4580 40 1 4.0374 -5.4431 4.2183 41 1 7.3957 -6.2380 3.5817 42 1 4.8977 -10.0047 2.7784 43 1 2.1750 -1.5508 2.1393 44 1 0.7427 -2.1951 1.2965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027701028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:25 Heat of formation + Delta-G solvation = 31.413313 kcal Electronic energy + Delta-G solvation = -25062.873460 eV Core-core repulsion = 21528.760921 eV Total energy + Delta-G solvation = -3534.112539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33986 -39.70550 -37.44219 -35.04811 -33.63049 -32.29078 -31.24759 -30.19874 -28.68866 -26.17472 -25.97062 -25.05322 -24.01089 -23.03494 -21.62896 -19.85414 -19.45414 -18.47867 -18.21389 -16.97293 -16.68269 -16.05534 -15.70162 -15.31496 -14.97240 -14.65377 -14.12275 -13.99243 -13.83141 -13.67491 -13.52525 -13.22535 -13.06502 -12.62189 -12.41902 -12.30800 -12.07947 -11.84146 -11.65862 -11.16573 -11.10283 -10.97727 -10.78671 -10.59880 -10.37726 -10.31077 -10.14326 -9.97366 -9.83718 -9.78579 -9.72595 -9.47812 -9.09576 -8.55750 -8.25719 -6.73892 -5.69780 -3.15704 0.41177 1.08074 1.41226 2.48593 2.90675 3.29174 3.41332 3.47038 3.48672 3.91133 4.50963 4.56605 4.77998 4.93538 4.96076 5.00243 5.05905 5.17058 5.30034 5.34480 5.44680 5.47650 5.57797 5.65770 5.75152 5.79771 5.88986 5.95390 6.03794 6.05956 6.16319 6.26425 6.41301 6.53488 6.72413 6.81628 6.96564 7.02515 7.41203 7.41266 7.74349 7.74860 7.83870 8.41106 8.48412 9.26010 9.88661 10.37023 11.35022 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.002439 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.248843 B =11475.723848 C =11962.314150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.063 0.937 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.607 5.607 17 C 0.510 3.490 18 O -0.544 6.544 19 C -0.129 4.129 20 C -0.029 4.029 21 C 0.070 3.930 22 C -0.251 4.251 23 S 0.107 5.893 24 C 0.023 3.977 25 N -0.465 5.465 26 C 0.098 3.902 27 H 0.028 0.972 28 H 0.044 0.956 29 H -0.001 1.001 30 H 0.252 0.748 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.179 0.821 42 H 0.199 0.801 43 H 0.091 0.909 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -24.340 -0.285 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.341 5.341 17 C 0.298 3.702 18 O -0.421 6.421 19 C -0.170 4.170 20 C -0.070 4.070 21 C -0.062 4.062 22 C -0.390 4.390 23 S 0.358 5.642 24 C -0.276 4.276 25 N -0.178 5.178 26 C -0.026 4.026 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.196 0.804 42 H 0.216 0.784 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.135 -24.465 0.267 26.482 hybrid contribution -0.125 1.612 -0.149 1.623 sum 10.011 -22.853 0.118 24.950 Atomic orbital electron populations 1.20792 0.82565 0.95598 0.99311 1.43951 1.01878 1.00050 1.85536 1.19233 0.97848 0.85148 1.36169 0.91373 1.25030 0.97812 0.98533 0.98265 1.70071 1.18347 1.27049 1.39706 0.86224 0.78786 0.84043 0.77308 1.21540 1.21737 1.20507 1.20622 0.96394 0.86195 0.90809 0.91824 1.22088 0.99659 0.94979 1.00587 1.21903 1.00990 0.97299 0.96795 1.21732 1.01328 0.93554 0.84930 1.48300 1.49115 1.19104 1.17567 1.20576 0.78851 0.88086 0.82731 1.90705 1.61642 1.58716 1.31083 1.21575 1.00598 0.95471 0.99352 1.19955 0.99511 0.89011 0.98504 1.20451 0.89755 0.95248 1.00731 1.26921 1.00164 0.99090 1.12856 1.84060 1.11666 1.02669 1.65756 1.28428 0.93801 1.01383 1.03948 1.66134 1.38666 0.97808 1.15232 1.22518 0.96679 0.81077 1.02290 0.95331 0.93713 0.98276 0.93729 0.92261 0.91751 0.91312 0.91801 0.91535 0.90313 0.88318 0.89254 0.89285 0.89191 0.80370 0.78411 0.89079 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 7.91 59.85 0.47 4.45 16 2 N -0.59 -14.86 2.82 -173.34 -0.49 -15.35 16 3 C -0.25 -7.07 9.60 -15.06 -0.14 -7.22 16 4 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 5 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 6 N -0.91 -26.77 10.63 55.49 0.59 -26.18 16 7 Si 0.91 22.23 29.57 -169.99 -5.03 17.20 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.48 2.74 -67.81 -0.19 3.30 16 12 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 13 C -0.13 -2.21 5.13 -26.69 -0.14 -2.35 16 14 C -0.13 -1.64 6.08 -26.62 -0.16 -1.80 16 15 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 16 N -0.61 -9.65 2.97 -172.77 -0.51 -10.16 16 17 C 0.51 8.18 7.70 -10.98 -0.08 8.09 16 18 O -0.54 -10.96 15.39 5.56 0.09 -10.87 16 19 C -0.13 -1.50 3.95 -27.88 -0.11 -1.61 16 20 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 21 C 0.07 0.72 6.08 -84.22 -0.51 0.20 16 22 C -0.25 -2.13 11.07 29.12 0.32 -1.80 16 23 S 0.11 0.71 23.22 -107.50 -2.50 -1.79 16 24 C 0.02 0.17 12.23 51.58 0.63 0.80 16 25 N -0.46 -4.82 10.34 -11.89 -0.12 -4.94 16 26 C 0.10 1.94 5.79 -3.71 -0.02 1.91 16 27 H 0.03 0.76 7.41 -51.93 -0.39 0.38 16 28 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 29 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 37 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 38 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 39 H 0.09 1.00 7.99 -51.93 -0.41 0.59 16 40 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.09 2.13 7.01 -51.93 -0.36 1.76 16 44 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.19 363.55 -9.32 -42.50 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.64 Total: -0.62 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.18 Total: 4.74 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.54 Total: -56.64 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.50 Total: -1.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.19 -9.32 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027701028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.916 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds