Wall clock time and date at job start Tue Mar 31 2020 13:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47261 * 2 1 4 4 C 1.34771 * 119.99850 * 83.28424 * 3 2 1 5 5 O 1.21633 * 120.00152 * 184.29785 * 4 3 2 6 6 C 1.47264 * 120.00180 * 4.30024 * 4 3 2 7 7 N 1.33559 * 123.14178 * 354.06291 * 6 4 3 8 8 C 1.28649 * 115.77020 * 179.97438 * 7 6 4 9 9 C 1.50701 * 124.72521 * 179.97438 * 8 7 6 10 10 S 1.70768 * 110.55600 * 359.97438 * 8 7 6 11 11 C 1.35204 * 123.14392 * 174.05728 * 6 4 3 12 12 C 1.50705 * 125.58563 * 0.02562 * 11 6 4 13 13 C 1.46502 * 119.99829 * 263.28941 * 3 2 1 14 14 H 1.08995 * 110.88474 * 356.11592 * 13 3 2 15 15 C 1.55161 * 111.00527 * 120.00185 * 13 3 2 16 16 C 1.54320 * 102.94058 * 153.57298 * 15 13 3 17 17 N 1.47023 * 107.27425 * 337.80621 * 16 15 13 18 18 C 1.36936 * 125.64899 * 178.98907 * 17 16 15 19 19 H 1.07995 * 119.99826 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99971 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99925 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47382 * 89.99444 * 22 20 18 24 24 H 1.48506 * 109.46919 * 209.99843 * 22 20 18 25 25 H 1.48505 * 109.47019 * 329.99055 * 22 20 18 26 26 C 1.47431 * 108.70252 * 358.93931 * 17 16 15 27 27 H 1.08994 * 109.47387 * 59.99811 * 1 2 3 28 28 H 1.09002 * 109.47434 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46809 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.46809 * 240.00118 * 2 1 3 31 31 H 1.08998 * 109.47132 * 120.00624 * 2 1 3 32 32 H 1.08996 * 109.46961 * 89.99578 * 9 8 7 33 33 H 1.08993 * 109.47195 * 210.00053 * 9 8 7 34 34 H 1.09005 * 109.46482 * 329.99902 * 9 8 7 35 35 H 1.08998 * 109.46938 * 89.99530 * 12 11 6 36 36 H 1.08997 * 109.46970 * 209.99817 * 12 11 6 37 37 H 1.08997 * 109.47197 * 329.99660 * 12 11 6 38 38 H 1.09001 * 110.71797 * 271.93478 * 15 13 3 39 39 H 1.08996 * 110.71627 * 35.20936 * 15 13 3 40 40 H 1.08996 * 109.88133 * 97.22547 * 16 15 13 41 41 H 1.09000 * 109.88328 * 218.23173 * 16 15 13 42 42 H 0.96999 * 119.99720 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.36606 * 265.29448 * 26 17 16 44 44 H 1.08996 * 110.36305 * 142.96606 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1143 2.0620 1.1592 5 8 2.4448 3.2325 1.1515 6 6 1.8190 1.3887 2.4352 7 7 1.3414 0.1437 2.5104 8 6 1.1349 -0.3053 3.6982 9 6 0.6007 -1.6781 4.0162 10 16 1.5504 0.8709 4.8645 11 6 2.0061 1.9731 3.6399 12 6 2.5313 3.3674 3.8662 13 6 2.4023 2.0223 -1.2601 14 1 2.3314 1.3202 -2.0907 15 6 1.5427 3.2865 -1.5254 16 6 2.4647 4.1519 -2.4100 17 7 3.8448 3.7059 -2.1695 18 6 4.9637 4.2091 -2.7779 19 1 5.9372 3.8121 -2.5312 20 6 4.8464 5.2293 -3.7119 21 7 3.6598 5.7127 -4.0129 22 14 6.3726 5.9152 -4.5424 23 1 6.6482 5.1476 -5.7833 24 1 6.1512 7.3437 -4.8828 25 1 7.5316 5.7998 -3.6212 26 6 3.8249 2.6281 -1.1638 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.4315 -2.3759 4.1209 33 1 0.0371 -1.6417 4.9483 34 1 -0.0527 -2.0095 3.2091 35 1 1.6981 4.0697 3.8922 36 1 3.0673 3.4043 4.8146 37 1 3.2083 3.6367 3.0555 38 1 0.6289 3.0264 -2.0596 39 1 1.3122 3.7990 -0.5914 40 1 2.2079 4.0130 -3.4601 41 1 2.3595 5.2024 -2.1387 42 1 3.5778 6.4254 -4.6658 43 1 3.9971 3.0355 -0.1676 44 1 4.5751 1.8739 -1.4012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033870021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:05 Heat of formation + Delta-G solvation = 33.513794 kcal Electronic energy + Delta-G solvation = -26192.196700 eV Core-core repulsion = 22658.175245 eV Total energy + Delta-G solvation = -3534.021455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99004 -40.21663 -38.39510 -36.83500 -34.36756 -34.14626 -31.65114 -31.21254 -30.72175 -29.04443 -27.34498 -26.41287 -25.26813 -24.17893 -22.53412 -22.01280 -21.45655 -19.78328 -19.17521 -18.73338 -17.75645 -16.87357 -16.75294 -16.53882 -16.16855 -15.70254 -15.41261 -15.02033 -14.72251 -14.56812 -14.40980 -14.25737 -14.23098 -14.13337 -13.66044 -13.52554 -13.26610 -13.10156 -12.98997 -12.92383 -12.82551 -12.72250 -12.59131 -12.25014 -12.06230 -12.04606 -12.01977 -11.82804 -11.57348 -10.73145 -10.68489 -10.37602 -10.26343 -9.83215 -9.49670 -8.88139 -7.85630 -5.22324 -0.46794 0.24720 0.63375 0.97462 1.43181 1.47023 1.55588 1.98834 2.29837 2.49649 3.00417 3.31658 3.63924 3.69838 3.90757 3.92262 3.98594 4.08004 4.14843 4.28074 4.50672 4.53630 4.58066 4.59995 4.68747 4.73181 4.79322 4.80545 4.80929 4.84918 4.97876 5.00070 5.10821 5.20863 5.21883 5.28945 5.40312 5.49783 5.62119 5.68515 5.79054 6.16608 6.37188 6.56267 7.07274 7.17934 7.73890 8.40598 9.24969 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.003349 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.175317 B = 8358.557784 C = 9008.276133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.577 3.423 5 O -0.553 6.553 6 C -0.019 4.019 7 N -0.446 5.446 8 C 0.013 3.987 9 C -0.075 4.075 10 S 0.265 5.735 11 C -0.208 4.208 12 C -0.082 4.082 13 C 0.150 3.850 14 H 0.111 0.889 15 C -0.136 4.136 16 C 0.198 3.802 17 N -0.621 5.621 18 C -0.245 4.245 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.985 3.015 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.126 3.874 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.019 0.981 41 H -0.003 1.003 42 H 0.247 0.753 43 H 0.027 0.973 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -18.999 21.145 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 N -0.316 5.316 4 C 0.365 3.635 5 O -0.432 6.432 6 C -0.152 4.152 7 N -0.162 5.162 8 C -0.266 4.266 9 C -0.135 4.135 10 S 0.523 5.477 11 C -0.332 4.332 12 C -0.141 4.141 13 C 0.045 3.955 14 H 0.129 0.871 15 C -0.175 4.175 16 C 0.073 3.927 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.812 3.188 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.196 1.196 26 C 0.000 4.000 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.015 0.985 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.199 -18.605 21.608 29.961 hybrid contribution 0.915 1.562 -1.843 2.583 sum -8.284 -17.043 19.765 27.381 Atomic orbital electron populations 1.21921 0.95048 1.02704 1.00353 1.22282 0.95462 0.79989 1.04862 1.47843 1.63402 1.15449 1.04951 1.17608 0.77341 0.85399 0.83194 1.90799 1.48735 1.16881 1.86794 1.20110 1.08878 0.92331 0.93911 1.67239 1.15002 1.09946 1.24050 1.27894 1.03370 1.04138 0.91164 1.20645 1.02410 0.86088 1.04377 1.82433 1.55070 1.02043 1.08123 1.25754 1.05616 1.04630 0.97215 1.20424 1.01672 0.88494 1.03513 1.22108 0.93858 0.94025 0.85466 0.87147 1.23006 0.98119 0.96524 0.99872 1.20735 0.82799 0.94038 0.95152 1.44621 1.03227 1.40567 1.46399 1.19459 0.86501 1.14587 1.16863 0.90192 1.25730 1.00191 0.99424 1.00676 1.70214 1.22855 1.30164 1.36861 0.84989 0.78402 0.76952 0.78419 1.20645 1.21927 1.19560 1.21912 0.95337 0.90131 0.92622 0.94251 0.89476 0.93988 0.90179 0.86333 0.88004 0.87771 0.88705 0.90092 0.88817 0.91135 0.90301 0.92059 0.96294 0.98472 0.94329 0.95537 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.67 71.98 0.70 -2.41 16 2 C 0.10 2.36 5.72 86.38 0.49 2.85 16 3 N -0.59 -19.65 2.58 -794.14 -2.05 -21.70 16 4 C 0.58 21.00 6.85 86.62 0.59 21.59 16 5 O -0.55 -24.35 10.23 -4.14 -0.04 -24.39 16 6 C -0.02 -0.54 6.36 40.56 0.26 -0.28 16 7 N -0.45 -9.94 5.38 -180.84 -0.97 -10.92 16 8 C 0.01 0.20 7.34 88.57 0.65 0.85 16 9 C -0.08 -0.47 10.46 71.24 0.74 0.28 16 10 S 0.27 3.79 22.89 -56.49 -1.29 2.49 16 11 C -0.21 -5.06 6.40 24.99 0.16 -4.90 16 12 C -0.08 -2.04 9.57 71.24 0.68 -1.36 16 13 C 0.15 5.94 3.56 46.39 0.16 6.11 16 14 H 0.11 3.97 7.78 -2.39 -0.02 3.95 16 15 C -0.14 -6.03 6.33 31.78 0.20 -5.83 16 16 C 0.20 11.08 5.37 86.73 0.47 11.54 16 17 N -0.62 -35.87 3.39 -691.98 -2.35 -38.22 16 18 C -0.25 -14.98 10.28 84.03 0.86 -14.12 16 19 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 20 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 21 N -0.95 -60.93 10.31 21.65 0.22 -60.70 16 22 Si 0.98 48.37 29.55 68.60 2.03 50.40 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.13 6.09 6.58 86.86 0.57 6.66 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.03 7.00 -2.39 -0.02 1.01 16 30 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 31 H 0.12 2.80 5.19 -2.39 -0.01 2.79 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.30 6.15 -2.39 -0.01 2.28 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.05 16 39 H 0.06 2.90 6.10 -2.39 -0.01 2.88 16 40 H 0.02 1.13 7.38 -2.39 -0.02 1.11 16 41 H 0.00 -0.19 7.50 -2.39 -0.02 -0.21 16 42 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.03 1.40 5.68 -2.39 -0.01 1.39 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -79.54 355.65 3.57 -75.98 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.01 Total: 9.71 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 7.01 Total: 17.35 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -5.15 Total: -131.54 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.29 Total: 2.49 kcal Total: -79.54 3.57 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033870021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.493 kcal (2) G-P(sol) polarization free energy of solvation -79.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds