Wall clock time and date at job start Tue Mar 31 2020 13:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47217 * 2 1 4 4 C 1.34769 * 120.00358 * 276.27220 * 3 2 1 5 5 O 1.21688 * 120.00220 * 185.44966 * 4 3 2 6 6 C 1.46687 * 120.00052 * 5.44360 * 4 3 2 7 7 S 1.76212 * 126.13051 * 354.95554 * 6 4 3 8 8 C 1.70950 * 90.31262 * 179.97438 * 7 6 4 9 9 C 1.50699 * 124.80247 * 180.02562 * 8 7 6 10 10 N 1.29428 * 110.39134 * 0.34893 * 8 7 6 11 11 C 1.30943 * 117.36457 * 359.72338 * 10 8 7 12 12 C 1.50695 * 122.90202 * 180.02562 * 11 10 8 13 13 C 1.46501 * 119.99240 * 96.27098 * 3 2 1 14 14 H 1.08991 * 110.89236 * 7.34170 * 13 3 2 15 15 C 1.55160 * 111.00201 * 243.45684 * 13 3 2 16 16 C 1.54327 * 102.94357 * 277.42960 * 15 13 3 17 17 N 1.47014 * 107.27088 * 337.80953 * 16 15 13 18 18 C 1.36942 * 125.64713 * 178.98343 * 17 16 15 19 19 H 1.08001 * 120.00231 * 185.17375 * 18 17 16 20 20 C 1.38809 * 119.99752 * 5.17793 * 18 17 16 21 21 N 1.31618 * 120.00558 * 5.21183 * 20 18 17 22 22 Si 1.86807 * 119.99920 * 185.21451 * 20 18 17 23 23 H 1.48500 * 109.47045 * 94.99412 * 22 20 18 24 24 H 1.48496 * 109.47067 * 214.99965 * 22 20 18 25 25 H 1.48500 * 109.46934 * 334.99758 * 22 20 18 26 26 C 1.47425 * 108.70738 * 358.93912 * 17 16 15 27 27 H 1.09004 * 109.46435 * 299.99586 * 1 2 3 28 28 H 1.08994 * 109.47304 * 59.99356 * 1 2 3 29 29 H 1.08998 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47057 * 240.00798 * 2 1 3 31 31 H 1.08994 * 109.47304 * 120.00644 * 2 1 3 32 32 H 1.09003 * 109.47107 * 270.33243 * 9 8 7 33 33 H 1.09001 * 109.47399 * 30.32889 * 9 8 7 34 34 H 1.09000 * 109.47317 * 150.33329 * 9 8 7 35 35 H 1.09003 * 109.47478 * 269.99785 * 12 11 10 36 36 H 1.09000 * 109.47522 * 30.00211 * 12 11 10 37 37 H 1.09003 * 109.47413 * 150.00017 * 12 11 10 38 38 H 1.08994 * 110.72103 * 35.79607 * 15 13 3 39 39 H 1.09002 * 110.72112 * 159.06928 * 15 13 3 40 40 H 1.09002 * 109.87835 * 97.22593 * 16 15 13 41 41 H 1.08996 * 109.88324 * 218.38698 * 16 15 13 42 42 H 0.96998 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.36405 * 265.29304 * 26 17 16 44 44 H 1.08991 * 110.37096 * 142.97054 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1228 2.0591 -1.1601 5 8 2.6206 3.1694 -1.1734 6 6 1.6365 1.4585 -2.4069 7 16 1.0065 -0.1763 -2.5960 8 6 0.7470 0.1064 -4.2619 9 6 0.1745 -0.9002 -5.2262 10 7 1.1180 1.3052 -4.5790 11 6 1.5977 2.0597 -3.6224 12 6 2.0656 3.4736 -3.8517 13 6 2.3932 2.0255 1.2612 14 1 2.3750 1.3103 2.0835 15 6 1.4746 3.2397 1.5599 16 6 2.1135 4.3700 0.7257 17 7 3.5144 3.9954 0.4837 18 6 4.4224 4.7243 -0.2372 19 1 5.4067 4.3234 -0.4286 20 6 4.0775 5.9785 -0.7217 21 7 2.9168 6.5110 -0.4029 22 14 5.2607 6.9108 -1.8265 23 1 4.9146 6.6571 -3.2482 24 1 5.1598 8.3652 -1.5443 25 1 6.6483 6.4510 -1.5653 26 6 3.7803 2.7057 1.1465 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.9831 -1.4886 -5.6598 33 1 -0.5120 -1.5610 -4.6968 34 1 -0.3617 -0.3794 -6.0195 35 1 3.1249 3.4687 -4.1088 36 1 1.4956 3.9171 -4.6682 37 1 1.9147 4.0581 -2.9441 38 1 0.4555 3.0435 1.2269 39 1 1.4938 3.4860 2.6216 40 1 1.5879 4.4725 -0.2237 41 1 2.0709 5.3084 1.2786 42 1 2.6757 7.3873 -0.7418 43 1 4.2059 2.8686 2.1366 44 1 4.4515 2.0984 0.5394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034040412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:51 Heat of formation + Delta-G solvation = 94.547424 kcal Electronic energy + Delta-G solvation = -27385.785556 eV Core-core repulsion = 23854.410717 eV Total energy + Delta-G solvation = -3531.374839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17658 -39.32090 -36.12423 -35.48709 -32.74477 -32.10280 -30.12074 -28.99875 -28.96426 -28.05520 -26.75219 -24.28852 -23.39648 -22.63483 -21.97938 -19.86424 -19.52622 -17.87814 -17.74677 -16.64630 -16.43501 -15.46298 -15.30166 -14.75753 -14.58692 -14.33840 -14.11656 -13.61093 -13.53097 -13.21657 -13.12368 -12.98951 -12.56151 -12.36958 -12.05382 -11.94391 -11.80319 -11.70762 -11.62764 -11.55248 -11.24798 -10.98940 -10.72554 -10.70643 -10.64496 -10.02356 -9.93010 -9.71037 -9.39461 -9.31179 -8.96993 -8.75857 -8.40845 -8.25316 -7.84814 -6.24888 -5.39385 -2.65455 0.59124 1.46198 1.83956 2.84696 3.36925 3.55900 3.61163 3.62278 3.86510 4.19890 4.74566 4.77301 4.98182 5.03751 5.14055 5.28763 5.32315 5.34549 5.45345 5.52334 5.58397 5.66434 5.71062 5.72857 5.77687 5.90236 6.06031 6.16883 6.19823 6.23828 6.28486 6.36713 6.53132 6.61031 6.65486 6.76491 6.95960 7.25298 7.80056 7.86107 7.93808 8.00717 8.11408 8.56557 9.03879 9.52619 10.14557 10.80737 11.72829 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005900 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.494757 B = 4744.452578 C = 6201.195653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 N -0.609 5.609 4 C 0.536 3.464 5 O -0.382 6.382 6 C -0.276 4.276 7 S 0.161 5.839 8 C 0.009 3.991 9 C -0.076 4.076 10 N -0.482 5.482 11 C 0.138 3.862 12 C -0.086 4.086 13 C 0.136 3.864 14 H 0.084 0.916 15 C -0.159 4.159 16 C 0.189 3.811 17 N -0.565 5.565 18 C -0.188 4.188 19 H 0.065 0.935 20 C -0.006 4.006 21 N -0.922 5.922 22 Si 0.896 3.104 23 H -0.293 1.293 24 H -0.296 1.296 25 H -0.286 1.286 26 C 0.129 3.871 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.244 0.756 43 H 0.023 0.977 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 -18.465 -1.311 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 N -0.347 5.347 4 C 0.319 3.681 5 O -0.248 6.248 6 C -0.400 4.400 7 S 0.418 5.582 8 C -0.266 4.266 9 C -0.136 4.136 10 N -0.198 5.198 11 C 0.002 3.998 12 C -0.145 4.145 13 C 0.032 3.968 14 H 0.102 0.898 15 C -0.199 4.199 16 C 0.064 3.936 17 N -0.290 5.290 18 C -0.317 4.317 19 H 0.083 0.917 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.728 3.272 23 H -0.221 1.221 24 H -0.223 1.223 25 H -0.212 1.212 26 C 0.002 3.998 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.615 -18.315 -1.379 19.883 hybrid contribution 0.732 1.029 -0.986 1.602 sum -6.883 -17.286 -2.365 18.756 Atomic orbital electron populations 1.22475 0.95907 1.02298 1.03052 1.21623 0.94730 0.84082 1.01670 1.47632 1.67867 1.12692 1.06531 1.17136 0.82281 0.87217 0.81503 1.91623 1.35276 1.14910 1.82980 1.26040 1.15902 0.97219 1.00801 1.84247 1.57435 1.13386 1.03082 1.27788 1.01772 0.96194 1.00801 1.20400 1.00777 0.95284 0.97097 1.66130 1.14254 1.03905 1.35516 1.20659 0.94977 0.98039 0.86083 1.20644 1.00941 0.88202 1.04683 1.22321 0.96941 0.93843 0.83684 0.89814 1.23384 0.98315 0.97556 1.00618 1.21160 0.84473 0.91962 0.95963 1.44118 1.07736 1.18622 1.58556 1.18776 0.92866 0.95830 1.24216 0.91674 1.24516 0.96982 0.97176 1.01427 1.69939 1.21434 1.16802 1.49021 0.86319 0.80221 0.79312 0.81307 1.22071 1.22283 1.21204 1.21778 0.92926 0.89298 0.95841 0.91780 0.91706 0.91472 0.91293 0.89484 0.89901 0.90370 0.89729 0.90408 0.91777 0.87241 0.92505 0.91840 0.93493 0.93818 0.94500 0.95915 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.94 37.16 0.33 -1.51 16 2 C 0.10 1.22 5.69 -4.04 -0.02 1.20 16 3 N -0.61 -9.91 2.57 -165.20 -0.43 -10.33 16 4 C 0.54 10.50 7.04 -12.85 -0.09 10.41 16 5 O -0.38 -9.13 6.25 5.20 0.03 -9.10 16 6 C -0.28 -4.85 5.98 -37.09 -0.22 -5.07 16 7 S 0.16 2.01 15.58 -107.50 -1.68 0.33 16 8 C 0.01 0.12 7.39 -13.29 -0.10 0.02 16 9 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 10 N -0.48 -8.19 10.50 -7.71 -0.08 -8.27 16 11 C 0.14 2.56 6.79 -83.90 -0.57 2.00 16 12 C -0.09 -1.69 9.64 36.00 0.35 -1.35 16 13 C 0.14 2.30 3.81 -65.78 -0.25 2.05 16 14 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 15 C -0.16 -2.99 6.49 -24.89 -0.16 -3.15 16 16 C 0.19 4.67 4.22 -3.07 -0.01 4.66 16 17 N -0.57 -14.48 1.75 -170.08 -0.30 -14.77 16 18 C -0.19 -5.37 8.86 -15.06 -0.13 -5.50 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16 21 N -0.92 -27.87 10.41 55.49 0.58 -27.29 16 22 Si 0.90 23.25 29.56 -169.99 -5.02 18.22 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C 0.13 2.69 6.28 -2.53 -0.02 2.68 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.78 5.86 -45.04 -0.26 0.52 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.80 4.53 -22.71 -0.10 0.70 16 31 H 0.09 0.82 7.79 -51.93 -0.40 0.41 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 2.52 6.13 -51.93 -0.32 2.20 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.31 6.04 -51.93 -0.31 1.00 16 41 H 0.04 1.23 7.10 -51.93 -0.37 0.86 16 42 H 0.24 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -33.67 345.92 -8.67 -42.34 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.37 Total: -2.21 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.62 Total: 5.88 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.23 Total: -60.67 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.03 Total: -9.10 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.68 Total: 0.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.67 -8.67 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034040412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.884 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds