Wall clock time and date at job start Tue Mar 31 2020 13:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47217 * 2 1 4 4 C 1.34769 * 120.00358 * 276.27220 * 3 2 1 5 5 O 1.21688 * 120.00220 * 185.44966 * 4 3 2 6 6 C 1.46687 * 120.00052 * 5.44360 * 4 3 2 7 7 S 1.76212 * 126.13051 * 354.95554 * 6 4 3 8 8 C 1.70950 * 90.31262 * 179.97438 * 7 6 4 9 9 C 1.50699 * 124.80247 * 180.02562 * 8 7 6 10 10 N 1.29428 * 110.39134 * 0.34893 * 8 7 6 11 11 C 1.30943 * 117.36457 * 359.72338 * 10 8 7 12 12 C 1.50695 * 122.90202 * 180.02562 * 11 10 8 13 13 C 1.46501 * 119.99240 * 96.27098 * 3 2 1 14 14 H 1.08991 * 110.89236 * 7.34170 * 13 3 2 15 15 C 1.55160 * 111.00201 * 243.45684 * 13 3 2 16 16 C 1.54327 * 102.94357 * 277.42960 * 15 13 3 17 17 N 1.47014 * 107.27088 * 337.80953 * 16 15 13 18 18 C 1.36942 * 125.64713 * 178.98343 * 17 16 15 19 19 H 1.08001 * 120.00231 * 185.17375 * 18 17 16 20 20 C 1.38809 * 119.99752 * 5.17793 * 18 17 16 21 21 N 1.31618 * 120.00558 * 5.21183 * 20 18 17 22 22 Si 1.86807 * 119.99920 * 185.21451 * 20 18 17 23 23 H 1.48500 * 109.47045 * 94.99412 * 22 20 18 24 24 H 1.48496 * 109.47067 * 214.99965 * 22 20 18 25 25 H 1.48500 * 109.46934 * 334.99758 * 22 20 18 26 26 C 1.47425 * 108.70738 * 358.93912 * 17 16 15 27 27 H 1.09004 * 109.46435 * 299.99586 * 1 2 3 28 28 H 1.08994 * 109.47304 * 59.99356 * 1 2 3 29 29 H 1.08998 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47057 * 240.00798 * 2 1 3 31 31 H 1.08994 * 109.47304 * 120.00644 * 2 1 3 32 32 H 1.09003 * 109.47107 * 270.33243 * 9 8 7 33 33 H 1.09001 * 109.47399 * 30.32889 * 9 8 7 34 34 H 1.09000 * 109.47317 * 150.33329 * 9 8 7 35 35 H 1.09003 * 109.47478 * 269.99785 * 12 11 10 36 36 H 1.09000 * 109.47522 * 30.00211 * 12 11 10 37 37 H 1.09003 * 109.47413 * 150.00017 * 12 11 10 38 38 H 1.08994 * 110.72103 * 35.79607 * 15 13 3 39 39 H 1.09002 * 110.72112 * 159.06928 * 15 13 3 40 40 H 1.09002 * 109.87835 * 97.22593 * 16 15 13 41 41 H 1.08996 * 109.88324 * 218.38698 * 16 15 13 42 42 H 0.96998 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.36405 * 265.29304 * 26 17 16 44 44 H 1.08991 * 110.37096 * 142.97054 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1228 2.0591 -1.1601 5 8 2.6206 3.1694 -1.1734 6 6 1.6365 1.4585 -2.4069 7 16 1.0065 -0.1763 -2.5960 8 6 0.7470 0.1064 -4.2619 9 6 0.1745 -0.9002 -5.2262 10 7 1.1180 1.3052 -4.5790 11 6 1.5977 2.0597 -3.6224 12 6 2.0656 3.4736 -3.8517 13 6 2.3932 2.0255 1.2612 14 1 2.3750 1.3103 2.0835 15 6 1.4746 3.2397 1.5599 16 6 2.1135 4.3700 0.7257 17 7 3.5144 3.9954 0.4837 18 6 4.4224 4.7243 -0.2372 19 1 5.4067 4.3234 -0.4286 20 6 4.0775 5.9785 -0.7217 21 7 2.9168 6.5110 -0.4029 22 14 5.2607 6.9108 -1.8265 23 1 4.9146 6.6571 -3.2482 24 1 5.1598 8.3652 -1.5443 25 1 6.6483 6.4510 -1.5653 26 6 3.7803 2.7057 1.1465 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.9831 -1.4886 -5.6598 33 1 -0.5120 -1.5610 -4.6968 34 1 -0.3617 -0.3794 -6.0195 35 1 3.1249 3.4687 -4.1088 36 1 1.4956 3.9171 -4.6682 37 1 1.9147 4.0581 -2.9441 38 1 0.4555 3.0435 1.2269 39 1 1.4938 3.4860 2.6216 40 1 1.5879 4.4725 -0.2237 41 1 2.0709 5.3084 1.2786 42 1 2.6757 7.3873 -0.7418 43 1 4.2059 2.8686 2.1366 44 1 4.4515 2.0984 0.5394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034040412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:50 Heat of formation + Delta-G solvation = 72.311038 kcal Electronic energy + Delta-G solvation = -27386.749798 eV Core-core repulsion = 23854.410717 eV Total energy + Delta-G solvation = -3532.339081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55625 -40.61544 -37.78455 -36.81739 -34.30148 -33.61852 -31.50559 -30.67135 -30.10778 -29.56051 -28.33105 -26.29486 -24.48524 -23.73988 -23.29668 -21.80209 -20.89384 -19.11118 -19.09328 -18.54083 -17.79547 -16.80365 -16.66160 -16.44971 -16.01711 -15.83151 -15.60008 -15.32737 -14.63809 -14.43077 -14.25082 -14.16707 -13.81745 -13.66097 -13.52478 -13.36216 -13.25968 -13.16147 -12.97668 -12.83790 -12.74072 -12.62189 -12.38660 -12.24016 -12.17603 -11.97638 -11.69723 -11.57612 -11.35086 -10.58725 -10.44622 -10.21473 -10.09525 -9.51465 -9.31455 -8.28586 -7.61064 -4.84975 -0.60260 0.33468 0.69336 1.41596 1.45169 1.50812 1.57523 2.12198 2.45956 2.61060 3.13661 3.56436 3.67956 3.86217 3.97193 4.01199 4.03219 4.15192 4.28270 4.35827 4.39227 4.52014 4.57827 4.60548 4.69735 4.71024 4.77396 4.83128 4.88425 4.96286 4.97464 5.04712 5.08272 5.13285 5.17208 5.38305 5.39647 5.57130 5.89049 5.94642 6.02954 6.43672 6.58366 6.79571 7.35119 7.63891 8.06109 8.69618 9.49537 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005900 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.494757 B = 4744.452578 C = 6201.195653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 N -0.607 5.607 4 C 0.528 3.472 5 O -0.442 6.442 6 C -0.318 4.318 7 S 0.273 5.727 8 C 0.003 3.997 9 C -0.078 4.078 10 N -0.517 5.517 11 C 0.120 3.880 12 C -0.074 4.074 13 C 0.151 3.849 14 H 0.142 0.858 15 C -0.144 4.144 16 C 0.202 3.798 17 N -0.579 5.579 18 C -0.183 4.183 19 H 0.058 0.942 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.300 1.300 24 H -0.298 1.298 25 H -0.274 1.274 26 C 0.122 3.878 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.005 0.995 41 H -0.003 1.003 42 H 0.234 0.766 43 H 0.037 0.963 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 -23.552 -0.280 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 N -0.343 5.343 4 C 0.313 3.687 5 O -0.312 6.312 6 C -0.442 4.442 7 S 0.532 5.468 8 C -0.270 4.270 9 C -0.137 4.137 10 N -0.234 5.234 11 C -0.017 4.017 12 C -0.133 4.133 13 C 0.047 3.953 14 H 0.160 0.840 15 C -0.184 4.184 16 C 0.077 3.923 17 N -0.303 5.303 18 C -0.313 4.313 19 H 0.076 0.924 20 C -0.252 4.252 21 N -0.601 5.601 22 Si 0.780 3.220 23 H -0.228 1.228 24 H -0.226 1.226 25 H -0.199 1.199 26 C -0.004 4.004 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.015 0.985 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.746 -23.506 -0.317 25.083 hybrid contribution 1.041 2.391 -1.326 2.925 sum -7.705 -21.116 -1.643 22.537 Atomic orbital electron populations 1.22460 0.94529 1.04397 1.02097 1.22012 0.95778 0.81330 1.03563 1.47735 1.66984 1.14340 1.05244 1.17561 0.81489 0.86770 0.82920 1.91598 1.38076 1.17373 1.84188 1.25935 1.17410 1.01182 0.99649 1.83580 1.54542 1.07794 1.00852 1.28734 0.99621 0.95697 1.02974 1.20674 1.01859 0.94585 0.96629 1.66139 1.16179 1.05512 1.35527 1.20435 0.96295 0.97586 0.87427 1.20315 1.00241 0.89973 1.02757 1.22299 0.93212 0.94255 0.85502 0.84033 1.23209 0.98556 0.96027 1.00570 1.20782 0.84526 0.92663 0.94345 1.44242 1.07597 1.20196 1.58313 1.18964 0.93028 0.95835 1.23487 0.92436 1.25103 0.98435 0.98397 1.03313 1.70167 1.23027 1.16496 1.50361 0.85474 0.79224 0.77966 0.79373 1.22846 1.22552 1.19920 1.22006 0.95597 0.87418 0.95396 0.91608 0.93919 0.87715 0.91178 0.85576 0.87977 0.87038 0.89693 0.91957 0.91101 0.91205 0.91518 0.89622 0.97706 0.98538 0.95678 0.94580 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 8.94 71.98 0.64 -2.08 16 2 C 0.10 1.77 5.69 86.38 0.49 2.26 16 3 N -0.61 -18.23 2.57 -794.79 -2.05 -20.28 16 4 C 0.53 20.97 7.04 86.45 0.61 21.58 16 5 O -0.44 -22.44 6.25 -4.31 -0.03 -22.47 16 6 C -0.32 -11.13 5.98 23.88 0.14 -10.99 16 7 S 0.27 5.83 15.58 -56.49 -0.88 4.95 16 8 C 0.00 0.07 7.39 88.46 0.65 0.72 16 9 C -0.08 -1.06 10.46 71.24 0.75 -0.32 16 10 N -0.52 -17.42 10.50 -178.30 -1.87 -19.29 16 11 C 0.12 4.62 6.79 42.09 0.29 4.90 16 12 C -0.07 -3.20 9.64 71.23 0.69 -2.51 16 13 C 0.15 4.65 3.81 46.39 0.18 4.83 16 14 H 0.14 2.86 7.77 -2.39 -0.02 2.84 16 15 C -0.14 -5.23 6.49 31.78 0.21 -5.02 16 16 C 0.20 10.49 4.22 86.73 0.37 10.86 16 17 N -0.58 -30.80 1.75 -692.00 -1.21 -32.01 16 18 C -0.18 -10.97 8.86 84.03 0.74 -10.23 16 19 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 20 C -0.06 -3.74 5.46 84.86 0.46 -3.27 16 21 N -0.95 -61.48 10.41 21.65 0.23 -61.25 16 22 Si 0.95 50.51 29.56 68.60 2.03 52.53 16 23 H -0.30 -16.16 7.11 99.48 0.71 -15.45 16 24 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 25 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.12 4.99 6.28 86.86 0.55 5.54 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 0.87 5.86 -6.77 -0.04 0.83 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.27 4.53 -20.97 -0.09 1.17 16 31 H 0.13 1.44 7.79 -2.39 -0.02 1.42 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.07 3.60 6.13 -2.39 -0.01 3.59 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.00 0.30 6.04 -2.39 -0.01 0.29 16 41 H 0.00 -0.21 7.10 -2.39 -0.02 -0.22 16 42 H 0.23 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -83.74 345.92 3.87 -79.87 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 0.90 Total: 1.70 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.76 Total: 16.26 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -4.90 Total: -132.84 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.03 Total: -22.47 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.03 Total: 52.53 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -0.88 Total: 4.95 kcal Total: -83.74 3.87 -79.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034040412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.178 kcal (2) G-P(sol) polarization free energy of solvation -83.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds