Wall clock time and date at job start Tue Mar 31 2020 13:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46958 * 2 1 4 4 C 1.34773 * 120.00213 * 271.25734 * 3 2 1 5 5 O 1.21688 * 120.00339 * 185.61191 * 4 3 2 6 6 C 1.46683 * 119.99851 * 5.60927 * 4 3 2 7 7 S 1.76220 * 126.13055 * 7.37353 * 6 4 3 8 8 C 1.70948 * 90.31295 * 179.97438 * 7 6 4 9 9 C 1.50706 * 124.80571 * 179.97438 * 8 7 6 10 10 N 1.29432 * 110.39374 * 359.97438 * 8 7 6 11 11 C 1.30940 * 117.36411 * 359.71219 * 10 8 7 12 12 C 1.50692 * 122.90732 * 180.34558 * 11 10 8 13 13 C 1.46503 * 119.99916 * 91.26098 * 3 2 1 14 14 H 1.08996 * 110.88335 * 2.42091 * 13 3 2 15 15 C 1.55158 * 111.00618 * 126.34528 * 13 3 2 16 16 C 1.54320 * 102.94112 * 153.57344 * 15 13 3 17 17 N 1.47018 * 107.27268 * 337.80832 * 16 15 13 18 18 C 1.36939 * 125.64753 * 178.90214 * 17 16 15 19 19 H 1.07998 * 120.00107 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00181 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99796 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99970 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47594 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47114 * 120.00470 * 22 20 18 25 25 H 1.48497 * 109.47104 * 239.99939 * 22 20 18 26 26 C 1.47424 * 108.70524 * 358.94277 * 17 16 15 27 27 H 1.09002 * 109.47262 * 299.99824 * 1 2 3 28 28 H 1.09002 * 109.47181 * 60.00357 * 1 2 3 29 29 H 1.09005 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46515 * 239.99635 * 2 1 3 31 31 H 1.09000 * 109.47074 * 120.00183 * 2 1 3 32 32 H 1.09000 * 109.47033 * 89.99884 * 9 8 7 33 33 H 1.08998 * 109.47596 * 210.00053 * 9 8 7 34 34 H 1.09004 * 109.46628 * 330.00374 * 9 8 7 35 35 H 1.08998 * 109.47537 * 270.19191 * 12 11 10 36 36 H 1.09008 * 109.47071 * 30.19041 * 12 11 10 37 37 H 1.09005 * 109.47163 * 150.18998 * 12 11 10 38 38 H 1.09007 * 110.71376 * 35.21254 * 15 13 3 39 39 H 1.09002 * 110.71923 * 271.94297 * 15 13 3 40 40 H 1.08998 * 109.88338 * 218.38926 * 16 15 13 41 41 H 1.09004 * 109.87867 * 97.22904 * 16 15 13 42 42 H 0.96996 * 120.00136 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.36646 * 142.96580 * 26 17 16 44 44 H 1.09003 * 110.36390 * 265.28549 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2187 2.0251 -1.1669 5 8 2.7200 3.1339 -1.1717 6 6 1.8328 1.3892 -2.4311 7 16 0.9366 -0.1180 -2.6050 8 6 1.0090 0.0243 -4.3070 9 6 0.4162 -0.9633 -5.2788 10 7 1.6449 1.1004 -4.6429 11 6 2.0955 1.8599 -3.6761 12 6 2.8452 3.1432 -3.9248 13 6 2.2887 2.0625 1.2685 14 1 2.1179 1.3944 2.1125 15 6 3.7300 2.6364 1.2952 16 6 3.6131 3.8183 2.2807 17 7 2.1971 4.2114 2.3248 18 6 1.6701 5.2109 3.0984 19 1 0.6119 5.4230 3.0594 20 6 2.4961 5.9516 3.9328 21 7 3.7859 5.6936 3.9799 22 14 1.7772 7.3155 4.9874 23 1 0.3137 7.4042 4.7521 24 1 2.0307 7.0190 6.4203 25 1 2.4158 8.6073 4.6288 26 6 1.4384 3.3507 1.3991 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -0.6105 -0.6772 -5.5068 33 1 1.0044 -0.9680 -6.1964 34 1 0.4260 -1.9593 -4.8359 35 1 3.9125 2.9330 -3.9937 36 1 2.5019 3.5895 -4.8582 37 1 2.6635 3.8354 -3.1026 38 1 4.0239 2.9869 0.3058 39 1 4.4345 1.8924 1.6670 40 1 4.2191 4.6540 1.9308 41 1 3.9429 3.5081 3.2722 42 1 4.3631 6.2114 4.5626 43 1 0.4582 3.1178 1.8150 44 1 1.3341 3.8365 0.4289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034040413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:54 Heat of formation + Delta-G solvation = 51.762242 kcal Electronic energy + Delta-G solvation = -26068.161094 eV Core-core repulsion = 22534.930951 eV Total energy + Delta-G solvation = -3533.230143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52473 -39.58184 -36.77552 -35.71943 -33.17622 -32.30043 -30.50873 -29.40765 -29.17730 -28.38377 -26.78353 -24.42356 -23.69473 -23.00452 -21.88944 -20.14357 -20.01966 -18.36530 -18.06265 -16.94401 -16.73530 -15.67060 -15.54045 -14.97622 -14.64890 -14.52737 -14.44952 -14.00752 -13.80180 -13.49990 -13.41317 -13.17341 -12.77160 -12.66334 -12.38250 -12.28652 -12.19328 -12.07471 -11.89588 -11.70738 -11.50793 -11.35874 -10.85885 -10.83793 -10.70910 -10.35325 -10.02143 -9.91253 -9.67875 -9.62095 -9.34462 -9.08583 -8.77180 -8.53702 -8.34636 -6.72639 -5.63371 -2.96413 0.18108 1.10855 1.49371 2.41526 3.00345 3.25965 3.44368 3.49673 3.52275 3.86782 4.47347 4.57466 4.67595 4.73457 4.94163 5.02702 5.06890 5.11659 5.16042 5.45300 5.47364 5.49537 5.53852 5.58494 5.64112 5.71533 5.81037 5.83065 5.87582 5.90532 6.02646 6.21874 6.39959 6.53073 6.61525 6.66395 6.78990 7.16654 7.46497 7.61280 7.64979 7.77077 7.91920 8.29728 8.34475 9.29772 9.89972 10.56714 11.48196 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003342 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.298783 B = 8375.479289 C = 8810.945800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 N -0.599 5.599 4 C 0.592 3.408 5 O -0.497 6.497 6 C -0.302 4.302 7 S 0.194 5.806 8 C 0.019 3.981 9 C -0.079 4.079 10 N -0.484 5.484 11 C 0.150 3.850 12 C -0.094 4.094 13 C 0.134 3.866 14 H 0.094 0.906 15 C -0.161 4.161 16 C 0.186 3.814 17 N -0.601 5.601 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.132 3.868 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.033 0.967 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -18.554 -15.172 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.033 4.033 3 N -0.331 5.331 4 C 0.378 3.622 5 O -0.374 6.374 6 C -0.426 4.426 7 S 0.453 5.547 8 C -0.255 4.255 9 C -0.139 4.139 10 N -0.200 5.200 11 C 0.013 3.987 12 C -0.152 4.152 13 C 0.030 3.970 14 H 0.112 0.888 15 C -0.200 4.200 16 C 0.060 3.940 17 N -0.328 5.328 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.005 3.995 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.178 -18.480 -14.916 24.539 hybrid contribution 0.053 1.293 0.376 1.347 sum -6.126 -17.187 -14.540 23.331 Atomic orbital electron populations 1.22443 0.95413 1.02903 1.03265 1.21872 0.95135 0.83285 1.02985 1.47801 1.65754 1.13377 1.06188 1.16714 0.78904 0.85057 0.81476 1.90811 1.42293 1.18645 1.85659 1.25624 1.14853 1.02764 0.99337 1.84495 1.49881 1.20022 1.00322 1.27911 0.99424 0.97375 1.00837 1.20466 1.01207 0.94996 0.97239 1.66161 1.12893 1.04600 1.36368 1.20645 0.95412 0.96964 0.85727 1.20720 0.98713 0.91579 1.04225 1.22463 0.97817 0.94276 0.82400 0.88825 1.23384 0.94229 0.99361 1.03021 1.21055 0.85731 0.92110 0.95055 1.44337 1.03448 1.37780 1.47246 1.19085 0.92833 1.07657 1.15648 0.90523 1.24795 0.95667 0.99854 1.00244 1.69985 1.02754 1.42402 1.41747 0.86046 0.77980 0.81799 0.79960 1.20571 1.21840 1.21785 1.21767 0.93581 0.89535 0.94638 0.90956 0.91708 0.90823 0.90447 0.88825 0.89474 0.89429 0.90065 0.90289 0.90948 0.87569 0.89445 0.92800 0.93866 0.93823 0.93888 0.94860 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.01 37.16 0.33 -1.31 16 2 C 0.09 0.96 5.62 -4.04 -0.02 0.94 16 3 N -0.60 -8.98 2.56 -165.20 -0.42 -9.40 16 4 C 0.59 9.85 6.88 -12.85 -0.09 9.76 16 5 O -0.50 -9.99 10.32 5.20 0.05 -9.94 16 6 C -0.30 -4.26 6.20 -37.09 -0.23 -4.49 16 7 S 0.19 1.88 15.47 -107.50 -1.66 0.22 16 8 C 0.02 0.19 7.39 -13.29 -0.10 0.09 16 9 C -0.08 -0.49 10.46 36.01 0.38 -0.11 16 10 N -0.48 -6.46 10.50 -7.70 -0.08 -6.54 16 11 C 0.15 2.15 6.79 -83.90 -0.57 1.59 16 12 C -0.09 -1.29 9.78 36.00 0.35 -0.93 16 13 C 0.13 2.42 3.55 -65.78 -0.23 2.18 16 14 H 0.09 1.55 7.85 -51.93 -0.41 1.15 16 15 C -0.16 -3.29 6.28 -24.90 -0.16 -3.45 16 16 C 0.19 4.76 5.37 -3.07 -0.02 4.75 16 17 N -0.60 -16.13 3.39 -170.07 -0.58 -16.71 16 18 C -0.22 -6.47 10.28 -15.06 -0.15 -6.63 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.86 10.31 55.49 0.57 -27.29 16 22 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.13 2.92 6.64 -2.53 -0.02 2.91 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.64 5.90 -40.12 -0.24 0.41 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.73 4.68 -24.74 -0.12 0.62 16 31 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.11 1.68 5.87 -51.93 -0.30 1.37 16 38 H 0.09 1.89 5.51 -51.93 -0.29 1.61 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16 41 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.82 6.27 -51.93 -0.33 0.49 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -34.43 351.45 -8.68 -43.11 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.21 Total: -1.35 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.62 Total: 4.91 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.51 Total: -59.93 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.05 Total: -9.94 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.66 Total: 0.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.43 -8.68 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034040413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.870 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds