Wall clock time and date at job start Tue Mar 31 2020 13:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46958 * 2 1 4 4 C 1.34773 * 120.00213 * 271.25734 * 3 2 1 5 5 O 1.21688 * 120.00339 * 185.61191 * 4 3 2 6 6 C 1.46683 * 119.99851 * 5.60927 * 4 3 2 7 7 S 1.76220 * 126.13055 * 7.37353 * 6 4 3 8 8 C 1.70948 * 90.31295 * 179.97438 * 7 6 4 9 9 C 1.50706 * 124.80571 * 179.97438 * 8 7 6 10 10 N 1.29432 * 110.39374 * 359.97438 * 8 7 6 11 11 C 1.30940 * 117.36411 * 359.71219 * 10 8 7 12 12 C 1.50692 * 122.90732 * 180.34558 * 11 10 8 13 13 C 1.46503 * 119.99916 * 91.26098 * 3 2 1 14 14 H 1.08996 * 110.88335 * 2.42091 * 13 3 2 15 15 C 1.55158 * 111.00618 * 126.34528 * 13 3 2 16 16 C 1.54320 * 102.94112 * 153.57344 * 15 13 3 17 17 N 1.47018 * 107.27268 * 337.80832 * 16 15 13 18 18 C 1.36939 * 125.64753 * 178.90214 * 17 16 15 19 19 H 1.07998 * 120.00107 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00181 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99796 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99970 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47594 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47114 * 120.00470 * 22 20 18 25 25 H 1.48497 * 109.47104 * 239.99939 * 22 20 18 26 26 C 1.47424 * 108.70524 * 358.94277 * 17 16 15 27 27 H 1.09002 * 109.47262 * 299.99824 * 1 2 3 28 28 H 1.09002 * 109.47181 * 60.00357 * 1 2 3 29 29 H 1.09005 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46515 * 239.99635 * 2 1 3 31 31 H 1.09000 * 109.47074 * 120.00183 * 2 1 3 32 32 H 1.09000 * 109.47033 * 89.99884 * 9 8 7 33 33 H 1.08998 * 109.47596 * 210.00053 * 9 8 7 34 34 H 1.09004 * 109.46628 * 330.00374 * 9 8 7 35 35 H 1.08998 * 109.47537 * 270.19191 * 12 11 10 36 36 H 1.09008 * 109.47071 * 30.19041 * 12 11 10 37 37 H 1.09005 * 109.47163 * 150.18998 * 12 11 10 38 38 H 1.09007 * 110.71376 * 35.21254 * 15 13 3 39 39 H 1.09002 * 110.71923 * 271.94297 * 15 13 3 40 40 H 1.08998 * 109.88338 * 218.38926 * 16 15 13 41 41 H 1.09004 * 109.87867 * 97.22904 * 16 15 13 42 42 H 0.96996 * 120.00136 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.36646 * 142.96580 * 26 17 16 44 44 H 1.09003 * 110.36390 * 265.28549 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2187 2.0251 -1.1669 5 8 2.7200 3.1339 -1.1717 6 6 1.8328 1.3892 -2.4311 7 16 0.9366 -0.1180 -2.6050 8 6 1.0090 0.0243 -4.3070 9 6 0.4162 -0.9633 -5.2788 10 7 1.6449 1.1004 -4.6429 11 6 2.0955 1.8599 -3.6761 12 6 2.8452 3.1432 -3.9248 13 6 2.2887 2.0625 1.2685 14 1 2.1179 1.3944 2.1125 15 6 3.7300 2.6364 1.2952 16 6 3.6131 3.8183 2.2807 17 7 2.1971 4.2114 2.3248 18 6 1.6701 5.2109 3.0984 19 1 0.6119 5.4230 3.0594 20 6 2.4961 5.9516 3.9328 21 7 3.7859 5.6936 3.9799 22 14 1.7772 7.3155 4.9874 23 1 0.3137 7.4042 4.7521 24 1 2.0307 7.0190 6.4203 25 1 2.4158 8.6073 4.6288 26 6 1.4384 3.3507 1.3991 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -0.6105 -0.6772 -5.5068 33 1 1.0044 -0.9680 -6.1964 34 1 0.4260 -1.9593 -4.8359 35 1 3.9125 2.9330 -3.9937 36 1 2.5019 3.5895 -4.8582 37 1 2.6635 3.8354 -3.1026 38 1 4.0239 2.9869 0.3058 39 1 4.4345 1.8924 1.6670 40 1 4.2191 4.6540 1.9308 41 1 3.9429 3.5081 3.2722 42 1 4.3631 6.2114 4.5626 43 1 0.4582 3.1178 1.8150 44 1 1.3341 3.8365 0.4289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034040413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:53 Heat of formation + Delta-G solvation = 28.692710 kcal Electronic energy + Delta-G solvation = -26069.161464 eV Core-core repulsion = 22534.930951 eV Total energy + Delta-G solvation = -3534.230513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69980 -40.67230 -38.47973 -36.98456 -34.54589 -33.76552 -31.82819 -30.84375 -30.14162 -29.84493 -28.35176 -26.39074 -24.67710 -23.82520 -23.17080 -22.04246 -21.44297 -19.44670 -19.21829 -18.71940 -18.01292 -16.91770 -16.66920 -16.59600 -16.16785 -15.78317 -15.64116 -15.42844 -14.85022 -14.76218 -14.31409 -14.20677 -14.18315 -14.12902 -13.68671 -13.44444 -13.29834 -13.24310 -13.08304 -12.95263 -12.80509 -12.73108 -12.39455 -12.30523 -12.25525 -12.08686 -11.98547 -11.86295 -11.61996 -10.76911 -10.66587 -10.42024 -10.25711 -9.82716 -9.45955 -8.89569 -7.85388 -5.22062 -0.75563 0.23138 0.61727 1.40465 1.43999 1.46405 1.56512 1.81313 2.09816 2.49393 3.06652 3.31656 3.45069 3.69579 3.83552 3.90189 3.96487 4.00910 4.12019 4.23069 4.24590 4.43095 4.55871 4.57490 4.63270 4.69911 4.71656 4.73660 4.79598 4.84399 4.90716 4.93886 5.02544 5.09112 5.14573 5.32892 5.33825 5.42199 5.60453 5.67897 5.74788 6.17796 6.30830 6.68931 7.07164 7.09024 7.74829 8.40577 9.25141 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003342 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.298783 B = 8375.479289 C = 8810.945800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 N -0.596 5.596 4 C 0.586 3.414 5 O -0.546 6.546 6 C -0.343 4.343 7 S 0.279 5.721 8 C 0.018 3.982 9 C -0.082 4.082 10 N -0.515 5.515 11 C 0.141 3.859 12 C -0.090 4.090 13 C 0.156 3.844 14 H 0.121 0.879 15 C -0.148 4.148 16 C 0.197 3.803 17 N -0.622 5.622 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.295 1.295 26 C 0.131 3.869 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.081 0.919 40 H -0.005 1.005 41 H 0.020 0.980 42 H 0.247 0.753 43 H 0.045 0.955 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -22.053 -15.661 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.039 4.039 3 N -0.327 5.327 4 C 0.375 3.625 5 O -0.426 6.426 6 C -0.467 4.467 7 S 0.539 5.461 8 C -0.255 4.255 9 C -0.142 4.142 10 N -0.231 5.231 11 C 0.002 3.998 12 C -0.149 4.149 13 C 0.052 3.948 14 H 0.139 0.861 15 C -0.187 4.187 16 C 0.071 3.929 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.810 3.190 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.222 1.222 26 C 0.005 3.995 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.013 0.987 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.419 -22.057 -15.424 28.201 hybrid contribution 0.670 2.307 0.426 2.440 sum -7.749 -19.750 -14.998 25.982 Atomic orbital electron populations 1.22458 0.94078 1.05045 1.02278 1.22268 0.96195 0.80578 1.04904 1.47800 1.65513 1.14967 1.04440 1.17129 0.78098 0.84613 0.82659 1.90791 1.44420 1.20865 1.86557 1.25451 1.17368 1.05958 0.97874 1.83958 1.47300 1.15953 0.98840 1.28756 0.97404 0.96756 1.02577 1.20733 1.01645 0.95210 0.96582 1.66226 1.14695 1.05926 1.36288 1.20695 0.95551 0.97141 0.86432 1.20596 0.99103 0.91717 1.03509 1.22095 0.94613 0.93267 0.84873 0.86078 1.23170 0.96859 0.97966 1.00677 1.20753 0.84828 0.92409 0.94873 1.44641 1.04396 1.38275 1.47540 1.19485 0.93248 1.08549 1.15899 0.90108 1.25708 0.96087 1.02402 1.01814 1.70215 1.04018 1.43380 1.42404 0.84955 0.77916 0.78154 0.77955 1.18935 1.21309 1.22175 1.21837 0.94476 0.90731 0.92474 0.91983 0.92727 0.87022 0.89148 0.86293 0.87807 0.89224 0.87052 0.90096 0.89968 0.90240 0.90892 0.90040 0.98714 0.96223 0.94369 0.93707 0.97051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 9.01 71.98 0.65 -1.90 16 2 C 0.08 1.43 5.62 86.38 0.49 1.92 16 3 N -0.60 -17.03 2.56 -794.81 -2.04 -19.07 16 4 C 0.59 19.70 6.88 86.45 0.59 20.30 16 5 O -0.55 -23.27 10.32 -4.31 -0.04 -23.31 16 6 C -0.34 -9.44 6.20 23.88 0.15 -9.30 16 7 S 0.28 4.47 15.47 -56.49 -0.87 3.60 16 8 C 0.02 0.32 7.39 88.46 0.65 0.97 16 9 C -0.08 -0.69 10.46 71.24 0.75 0.06 16 10 N -0.51 -13.09 10.50 -178.29 -1.87 -14.97 16 11 C 0.14 4.06 6.79 42.09 0.29 4.35 16 12 C -0.09 -2.64 9.78 71.23 0.70 -1.95 16 13 C 0.16 5.50 3.55 46.38 0.16 5.67 16 14 H 0.12 3.68 7.85 -2.39 -0.02 3.66 16 15 C -0.15 -6.15 6.28 31.78 0.20 -5.95 16 16 C 0.20 10.61 5.37 86.73 0.47 11.08 16 17 N -0.62 -34.51 3.39 -692.00 -2.35 -36.86 16 18 C -0.24 -14.42 10.28 84.03 0.86 -13.56 16 19 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 21 N -0.95 -59.88 10.31 21.65 0.22 -59.66 16 22 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 26 C 0.13 5.90 6.64 86.85 0.58 6.48 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 0.90 5.90 -9.89 -0.06 0.84 16 29 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.09 1.33 4.68 -19.67 -0.09 1.24 16 31 H 0.12 1.53 7.91 -2.39 -0.02 1.51 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.08 2.76 5.87 -2.38 -0.01 2.75 16 38 H 0.07 3.30 5.51 -2.38 -0.01 3.29 16 39 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 40 H -0.01 -0.34 7.51 -2.39 -0.02 -0.36 16 41 H 0.02 1.13 7.38 -2.38 -0.02 1.12 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.01 0.58 6.27 -2.39 -0.01 0.57 16 Total: -1.00 -80.92 351.45 2.96 -77.96 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.89 Total: 8.07 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.99 Total: 14.62 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -6.03 Total: -130.56 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -0.87 Total: 3.60 kcal Total: -80.92 2.96 -77.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034040413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.655 kcal (2) G-P(sol) polarization free energy of solvation -80.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds