Wall clock time and date at job start Tue Mar 31 2020 13:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47030 * 2 1 4 4 C 1.34775 * 120.00138 * 82.05660 * 3 2 1 5 5 O 1.21613 * 119.99983 * 183.81082 * 4 3 2 6 6 C 1.47256 * 119.99674 * 3.81920 * 4 3 2 7 7 N 1.30555 * 125.54410 * 170.70554 * 6 4 3 8 8 C 1.30700 * 115.90968 * 180.02562 * 7 6 4 9 9 C 1.50710 * 122.10773 * 180.02562 * 8 7 6 10 10 C 1.34233 * 115.78743 * 359.97438 * 8 7 6 11 11 C 1.50695 * 125.46003 * 180.02562 * 10 8 7 12 12 S 1.71075 * 109.08647 * 0.26692 * 10 8 7 13 13 C 1.46505 * 119.99827 * 262.05678 * 3 2 1 14 14 H 1.08994 * 110.88809 * 10.44473 * 13 3 2 15 15 C 1.55157 * 111.00300 * 246.56117 * 13 3 2 16 16 C 1.54328 * 102.94162 * 277.42944 * 15 13 3 17 17 N 1.47015 * 107.27117 * 337.80881 * 16 15 13 18 18 C 1.36946 * 125.64635 * 178.98547 * 17 16 15 19 19 H 1.08003 * 119.99795 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00159 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00105 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47045 * 119.99723 * 22 20 18 25 25 H 1.48507 * 109.47073 * 239.99590 * 22 20 18 26 26 C 1.47417 * 108.70722 * 358.94085 * 17 16 15 27 27 H 1.08998 * 109.47405 * 59.99697 * 1 2 3 28 28 H 1.09005 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47124 * 299.99868 * 1 2 3 30 30 H 1.09005 * 109.46780 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.47405 * 120.00303 * 2 1 3 32 32 H 1.08998 * 109.47050 * 269.97401 * 9 8 7 33 33 H 1.09000 * 109.47037 * 29.97347 * 9 8 7 34 34 H 1.09002 * 109.46663 * 149.97356 * 9 8 7 35 35 H 1.08995 * 109.46932 * 90.00139 * 11 10 8 36 36 H 1.09005 * 109.46805 * 330.00004 * 11 10 8 37 37 H 1.08991 * 109.47182 * 210.00282 * 11 10 8 38 38 H 1.08996 * 110.71903 * 35.79269 * 15 13 3 39 39 H 1.09005 * 110.71997 * 159.06786 * 15 13 3 40 40 H 1.08998 * 109.88209 * 97.22549 * 16 15 13 41 41 H 1.09003 * 109.88362 * 218.38981 * 16 15 13 42 42 H 0.96998 * 120.00154 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.36703 * 265.29178 * 26 17 16 44 44 H 1.08997 * 110.37450 * 142.96717 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0908 2.0703 1.1560 5 8 2.4300 3.2382 1.1474 6 6 1.7596 1.4090 2.4293 7 7 1.9540 1.9115 3.6185 8 6 1.5894 1.1590 4.6230 9 6 1.7498 1.6013 6.0548 10 6 1.0621 -0.0322 4.2991 11 6 0.5709 -1.0663 5.2790 12 16 1.0432 -0.1911 2.5959 13 6 2.4277 2.0133 -1.2566 14 1 2.1401 1.4012 -2.1113 15 6 3.9529 2.2983 -1.2647 16 6 4.0597 3.6303 -0.4925 17 7 2.7471 4.2876 -0.5725 18 6 2.4185 5.4863 0.0025 19 1 1.4224 5.8866 -0.1154 20 6 3.3657 6.1868 0.7367 21 7 4.5795 5.6986 0.8807 22 14 2.9176 7.8221 1.5203 23 1 1.5021 8.1477 1.2114 24 1 3.0954 7.7311 2.9917 25 1 3.7995 8.8880 0.9801 26 6 1.8436 3.4432 -1.3749 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.7255 1.2867 6.4251 33 1 1.6729 2.6871 6.1105 34 1 0.9670 1.1498 6.6644 35 1 -0.4844 -0.8942 5.4904 36 1 1.1435 -0.9918 6.2035 37 1 0.6983 -2.0610 4.8519 38 1 4.4956 1.5077 -0.7466 39 1 4.3183 2.4137 -2.2851 40 1 4.3139 3.4354 0.5493 41 1 4.8200 4.2637 -0.9495 42 1 5.2413 6.1879 1.3940 43 1 1.8446 3.7685 -2.4152 44 1 0.8331 3.4750 -0.9676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034047036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:08 Heat of formation + Delta-G solvation = 96.553589 kcal Electronic energy + Delta-G solvation = -26990.366053 eV Core-core repulsion = 23459.078208 eV Total energy + Delta-G solvation = -3531.287845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.12866 -39.40474 -36.09180 -35.48504 -33.04359 -32.15844 -30.16820 -29.70383 -28.80127 -27.42510 -26.07651 -24.75036 -24.02978 -23.19540 -21.31230 -19.81348 -19.02231 -18.33144 -17.65661 -16.92784 -16.41858 -15.55895 -15.32712 -14.90835 -14.42243 -14.29475 -14.24125 -13.58822 -13.45459 -13.20796 -13.08230 -13.01921 -12.86080 -12.55789 -12.33040 -12.06311 -11.91022 -11.77278 -11.66496 -11.57710 -11.41519 -10.73211 -10.68238 -10.65505 -10.54971 -10.02231 -9.88300 -9.66665 -9.61897 -9.36537 -9.04233 -8.73832 -8.36239 -8.28506 -7.85951 -6.20951 -5.34782 -2.59873 0.57899 1.44919 1.88704 2.75117 3.16474 3.60199 3.65085 3.67673 3.88354 4.42147 4.78896 4.79690 4.88957 4.98217 5.05903 5.10519 5.29847 5.33314 5.45401 5.48282 5.55905 5.63006 5.66305 5.70232 5.72894 5.74240 5.80519 5.94148 6.00348 6.04991 6.14878 6.25510 6.38185 6.52404 6.60553 6.66233 6.77295 7.21526 7.73058 7.83888 7.93072 8.04145 8.16361 8.60871 9.01202 9.56972 10.19377 10.83823 11.78745 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.005698 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.819340 B = 4912.871557 C = 6477.849299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.529 3.471 5 O -0.350 6.350 6 C 0.028 3.972 7 N -0.397 5.397 8 C 0.050 3.950 9 C -0.080 4.080 10 C -0.281 4.281 11 C -0.070 4.070 12 S 0.160 5.840 13 C 0.137 3.863 14 H 0.088 0.912 15 C -0.162 4.162 16 C 0.187 3.813 17 N -0.567 5.567 18 C -0.194 4.194 19 H 0.067 0.933 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.900 3.100 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.296 1.296 26 C 0.129 3.871 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.244 0.756 43 H 0.026 0.974 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.163 -19.559 2.105 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.028 4.028 3 N -0.345 5.345 4 C 0.307 3.693 5 O -0.211 6.211 6 C -0.250 4.250 7 N -0.113 5.113 8 C -0.086 4.086 9 C -0.139 4.139 10 C -0.402 4.402 11 C -0.129 4.129 12 S 0.417 5.583 13 C 0.033 3.967 14 H 0.106 0.894 15 C -0.201 4.201 16 C 0.063 3.937 17 N -0.293 5.293 18 C -0.323 4.323 19 H 0.085 0.915 20 C -0.199 4.199 21 N -0.568 5.568 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.224 1.224 26 C 0.001 3.999 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.932 -18.874 1.618 20.537 hybrid contribution -0.176 0.859 1.595 1.820 sum -8.108 -18.014 3.214 20.014 Atomic orbital electron populations 1.22443 0.95756 1.02487 1.03105 1.21732 0.94777 0.84048 1.02237 1.47582 1.67499 1.12747 1.06709 1.17263 0.82938 0.87842 0.81213 1.91752 1.35871 1.10940 1.82530 1.28304 1.05386 0.93817 0.97466 1.66461 1.15345 1.32056 0.97406 1.20171 1.01186 0.90575 0.96675 1.20370 1.02028 1.02750 0.88753 1.25914 1.09597 1.01474 1.03167 1.20169 1.01064 0.95102 0.96539 1.84364 1.57036 1.20109 0.96749 1.22365 0.95775 0.95061 0.83496 0.89425 1.23422 0.94461 1.01256 1.00965 1.21143 0.87734 0.87035 0.97800 1.44171 1.07265 1.20169 1.57694 1.18808 0.95993 0.92843 1.24613 0.91462 1.24556 0.96172 0.98417 1.00791 1.69943 1.03203 1.38143 1.45562 0.86205 0.77010 0.84287 0.79266 1.21013 1.22199 1.22372 1.21784 0.94568 0.88486 0.95013 0.91435 0.91209 0.91887 0.89064 0.91070 0.90968 0.90509 0.91141 0.90844 0.90706 0.91421 0.92338 0.91670 0.92511 0.94903 0.94567 0.95702 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.96 37.16 0.33 -1.47 16 2 C 0.10 1.12 5.67 -4.05 -0.02 1.10 16 3 N -0.61 -10.01 2.58 -164.99 -0.43 -10.44 16 4 C 0.53 11.05 7.06 -12.60 -0.09 10.96 16 5 O -0.35 -9.26 9.02 5.27 0.05 -9.21 16 6 C 0.03 0.53 7.12 -14.43 -0.10 0.43 16 7 N -0.40 -8.12 10.58 -7.69 -0.08 -8.20 16 8 C 0.05 0.81 6.68 -84.48 -0.56 0.24 16 9 C -0.08 -1.03 9.75 36.01 0.35 -0.68 16 10 C -0.28 -3.69 6.36 -35.72 -0.23 -3.92 16 11 C -0.07 -0.62 9.73 36.00 0.35 -0.27 16 12 S 0.16 2.06 15.58 -107.50 -1.67 0.38 16 13 C 0.14 2.32 3.77 -65.78 -0.25 2.07 16 14 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 15 C -0.16 -3.06 6.53 -24.89 -0.16 -3.23 16 16 C 0.19 4.81 4.22 -3.07 -0.01 4.80 16 17 N -0.57 -15.07 1.73 -170.08 -0.29 -15.36 16 18 C -0.19 -5.78 8.75 -15.06 -0.13 -5.91 16 19 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -29.16 10.31 55.49 0.57 -28.59 16 22 Si 0.90 24.30 29.55 -169.99 -5.02 19.28 16 23 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -8.13 7.11 56.52 0.40 -7.73 16 25 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 26 C 0.13 2.72 6.18 -2.53 -0.02 2.71 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.75 6.10 -47.55 -0.29 0.46 16 30 H 0.09 0.81 7.89 -51.93 -0.41 0.40 16 31 H 0.07 0.82 4.40 -22.03 -0.10 0.72 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.70 7.25 -51.93 -0.38 0.32 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.59 7.33 -51.93 -0.38 0.21 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.68 5.83 -51.93 -0.30 1.38 16 41 H 0.03 0.94 7.51 -51.93 -0.39 0.55 16 42 H 0.24 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -36.86 348.68 -8.69 -45.55 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -6.43 Total: -5.27 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.64 Total: 6.61 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.23 Total: -62.59 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.05 Total: -9.21 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.02 Total: 19.28 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.67 Total: 0.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.86 -8.69 -45.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034047036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.104 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds