Wall clock time and date at job start Tue Mar 31 2020 13:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47030 * 2 1 4 4 C 1.34775 * 120.00138 * 82.05660 * 3 2 1 5 5 O 1.21613 * 119.99983 * 183.81082 * 4 3 2 6 6 C 1.47256 * 119.99674 * 3.81920 * 4 3 2 7 7 N 1.30555 * 125.54410 * 170.70554 * 6 4 3 8 8 C 1.30700 * 115.90968 * 180.02562 * 7 6 4 9 9 C 1.50710 * 122.10773 * 180.02562 * 8 7 6 10 10 C 1.34233 * 115.78743 * 359.97438 * 8 7 6 11 11 C 1.50695 * 125.46003 * 180.02562 * 10 8 7 12 12 S 1.71075 * 109.08647 * 0.26692 * 10 8 7 13 13 C 1.46505 * 119.99827 * 262.05678 * 3 2 1 14 14 H 1.08994 * 110.88809 * 10.44473 * 13 3 2 15 15 C 1.55157 * 111.00300 * 246.56117 * 13 3 2 16 16 C 1.54328 * 102.94162 * 277.42944 * 15 13 3 17 17 N 1.47015 * 107.27117 * 337.80881 * 16 15 13 18 18 C 1.36946 * 125.64635 * 178.98547 * 17 16 15 19 19 H 1.08003 * 119.99795 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00159 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00105 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47045 * 119.99723 * 22 20 18 25 25 H 1.48507 * 109.47073 * 239.99590 * 22 20 18 26 26 C 1.47417 * 108.70722 * 358.94085 * 17 16 15 27 27 H 1.08998 * 109.47405 * 59.99697 * 1 2 3 28 28 H 1.09005 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47124 * 299.99868 * 1 2 3 30 30 H 1.09005 * 109.46780 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.47405 * 120.00303 * 2 1 3 32 32 H 1.08998 * 109.47050 * 269.97401 * 9 8 7 33 33 H 1.09000 * 109.47037 * 29.97347 * 9 8 7 34 34 H 1.09002 * 109.46663 * 149.97356 * 9 8 7 35 35 H 1.08995 * 109.46932 * 90.00139 * 11 10 8 36 36 H 1.09005 * 109.46805 * 330.00004 * 11 10 8 37 37 H 1.08991 * 109.47182 * 210.00282 * 11 10 8 38 38 H 1.08996 * 110.71903 * 35.79269 * 15 13 3 39 39 H 1.09005 * 110.71997 * 159.06786 * 15 13 3 40 40 H 1.08998 * 109.88209 * 97.22549 * 16 15 13 41 41 H 1.09003 * 109.88362 * 218.38981 * 16 15 13 42 42 H 0.96998 * 120.00154 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.36703 * 265.29178 * 26 17 16 44 44 H 1.08997 * 110.37450 * 142.96717 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0908 2.0703 1.1560 5 8 2.4300 3.2382 1.1474 6 6 1.7596 1.4090 2.4293 7 7 1.9540 1.9115 3.6185 8 6 1.5894 1.1590 4.6230 9 6 1.7498 1.6013 6.0548 10 6 1.0621 -0.0322 4.2991 11 6 0.5709 -1.0663 5.2790 12 16 1.0432 -0.1911 2.5959 13 6 2.4277 2.0133 -1.2566 14 1 2.1401 1.4012 -2.1113 15 6 3.9529 2.2983 -1.2647 16 6 4.0597 3.6303 -0.4925 17 7 2.7471 4.2876 -0.5725 18 6 2.4185 5.4863 0.0025 19 1 1.4224 5.8866 -0.1154 20 6 3.3657 6.1868 0.7367 21 7 4.5795 5.6986 0.8807 22 14 2.9176 7.8221 1.5203 23 1 1.5021 8.1477 1.2114 24 1 3.0954 7.7311 2.9917 25 1 3.7995 8.8880 0.9801 26 6 1.8436 3.4432 -1.3749 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.7255 1.2867 6.4251 33 1 1.6729 2.6871 6.1105 34 1 0.9670 1.1498 6.6644 35 1 -0.4844 -0.8942 5.4904 36 1 1.1435 -0.9918 6.2035 37 1 0.6983 -2.0610 4.8519 38 1 4.4956 1.5077 -0.7466 39 1 4.3183 2.4137 -2.2851 40 1 4.3139 3.4354 0.5493 41 1 4.8200 4.2637 -0.9495 42 1 5.2413 6.1879 1.3940 43 1 1.8446 3.7685 -2.4152 44 1 0.8331 3.4750 -0.9676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034047036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:08 Heat of formation + Delta-G solvation = 70.305470 kcal Electronic energy + Delta-G solvation = -26991.504256 eV Core-core repulsion = 23459.078208 eV Total energy + Delta-G solvation = -3532.426049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51275 -40.68136 -37.79353 -36.84527 -34.38470 -33.85805 -31.59823 -30.78269 -30.44498 -29.04349 -27.42526 -26.27741 -25.59581 -24.19119 -22.68976 -21.80663 -20.34599 -19.50393 -19.03024 -18.55859 -18.03429 -16.96991 -16.62176 -16.51228 -16.11980 -15.63334 -15.58814 -15.54237 -14.67230 -14.38718 -13.98281 -13.85196 -13.81684 -13.70341 -13.67009 -13.61558 -13.46628 -13.10547 -12.97373 -12.86891 -12.78019 -12.67880 -12.40077 -12.24266 -11.97430 -11.87794 -11.64719 -11.48748 -11.35677 -10.97010 -10.58061 -10.19989 -10.10305 -9.45155 -9.35938 -8.30375 -7.64764 -4.86683 -0.61064 0.28551 0.78150 1.36994 1.41796 1.48527 1.50251 1.91677 2.47937 2.58792 3.31464 3.54815 3.80012 3.85707 3.95314 3.98004 4.03882 4.10813 4.21757 4.33401 4.38816 4.51368 4.61353 4.67892 4.71305 4.72603 4.81283 4.83195 4.90516 4.93247 4.95739 5.04067 5.05226 5.08607 5.16168 5.34787 5.38803 5.53162 5.81555 5.89252 6.02782 6.41209 6.44945 6.86953 7.32222 7.58902 8.04122 8.66260 9.47684 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.005698 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.819340 B = 4912.871557 C = 6477.849299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 N -0.600 5.600 4 C 0.523 3.477 5 O -0.432 6.432 6 C -0.042 4.042 7 N -0.456 5.456 8 C 0.010 3.990 9 C -0.077 4.077 10 C -0.269 4.269 11 C -0.074 4.074 12 S 0.283 5.717 13 C 0.151 3.849 14 H 0.152 0.848 15 C -0.146 4.146 16 C 0.200 3.800 17 N -0.582 5.582 18 C -0.186 4.186 19 H 0.061 0.939 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.955 3.045 23 H -0.271 1.271 24 H -0.308 1.308 25 H -0.291 1.291 26 C 0.122 3.878 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.038 0.962 30 H 0.135 0.865 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.006 0.994 41 H -0.014 1.014 42 H 0.232 0.768 43 H 0.044 0.956 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -24.452 1.042 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 N -0.338 5.338 4 C 0.304 3.696 5 O -0.298 6.298 6 C -0.317 4.317 7 N -0.174 5.174 8 C -0.126 4.126 9 C -0.136 4.136 10 C -0.391 4.391 11 C -0.132 4.132 12 S 0.540 5.460 13 C 0.048 3.952 14 H 0.170 0.830 15 C -0.185 4.185 16 C 0.075 3.925 17 N -0.306 5.306 18 C -0.317 4.317 19 H 0.079 0.921 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.237 1.237 25 H -0.218 1.218 26 C -0.004 4.004 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.057 0.943 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.024 0.976 41 H 0.004 0.996 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.535 -23.838 0.490 26.067 hybrid contribution 0.452 2.126 1.976 2.937 sum -10.083 -21.712 2.467 24.066 Atomic orbital electron populations 1.22444 0.94339 1.04643 1.02162 1.22148 0.95843 0.81106 1.04234 1.47692 1.66347 1.14465 1.05277 1.17781 0.81458 0.87522 0.82857 1.91692 1.39639 1.14221 1.84284 1.27768 1.09523 0.98118 0.96243 1.66424 1.16799 1.35041 0.99103 1.20574 1.03188 0.91907 0.96967 1.20426 1.03647 1.01373 0.88112 1.26698 1.06268 1.01003 1.05109 1.20430 1.02149 0.94573 0.96068 1.83594 1.53133 1.13863 0.95363 1.22398 0.93428 0.93735 0.85664 0.83034 1.23257 0.96700 0.97285 1.01289 1.20761 0.86481 0.89651 0.95651 1.44295 1.08733 1.19914 1.57668 1.19047 0.95258 0.93971 1.23396 0.92100 1.25241 0.96503 1.01734 1.02492 1.70200 1.03952 1.39107 1.46829 0.85309 0.77426 0.81207 0.77420 1.19549 1.23709 1.21793 1.22030 0.93247 0.90604 0.94537 0.91066 0.87331 0.94282 0.84739 0.91122 0.90379 0.93061 0.87764 0.88876 0.89351 0.89000 0.91258 0.88897 0.97575 0.99553 0.95886 0.93866 0.95771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.96 71.98 0.64 -2.05 16 2 C 0.09 1.64 5.67 86.38 0.49 2.13 16 3 N -0.60 -18.68 2.58 -794.17 -2.05 -20.73 16 4 C 0.52 22.56 7.06 86.61 0.61 23.17 16 5 O -0.43 -24.46 9.02 -4.07 -0.04 -24.50 16 6 C -0.04 -1.61 7.12 87.26 0.62 -0.99 16 7 N -0.46 -19.71 10.58 -178.23 -1.89 -21.59 16 8 C 0.01 0.31 6.68 41.82 0.28 0.59 16 9 C -0.08 -2.01 9.75 71.24 0.69 -1.31 16 10 C -0.27 -6.37 6.36 24.77 0.16 -6.22 16 11 C -0.07 -0.96 9.73 71.23 0.69 -0.27 16 12 S 0.28 6.39 15.58 -56.49 -0.88 5.51 16 13 C 0.15 4.70 3.77 46.38 0.17 4.88 16 14 H 0.15 2.91 7.89 -2.39 -0.02 2.90 16 15 C -0.15 -5.37 6.53 31.78 0.21 -5.16 16 16 C 0.20 10.85 4.22 86.73 0.37 11.21 16 17 N -0.58 -32.32 1.73 -692.00 -1.20 -33.52 16 18 C -0.19 -11.75 8.75 84.03 0.74 -11.01 16 19 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.07 -4.43 5.49 84.86 0.47 -3.97 16 21 N -0.95 -65.04 10.31 21.65 0.22 -64.82 16 22 Si 0.95 53.08 29.55 68.60 2.03 55.11 16 23 H -0.27 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.31 -17.66 7.11 99.48 0.71 -16.96 16 25 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 26 C 0.12 5.09 6.18 86.86 0.54 5.63 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.04 0.80 6.10 -5.17 -0.03 0.76 16 30 H 0.13 1.41 7.89 -2.38 -0.02 1.39 16 31 H 0.07 1.30 4.40 -21.40 -0.09 1.21 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.89 7.25 -2.39 -0.02 1.88 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.00 7.33 -2.38 -0.02 0.98 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 40 H 0.01 0.40 5.83 -2.39 -0.01 0.38 16 41 H -0.01 -0.84 7.51 -2.39 -0.02 -0.86 16 42 H 0.23 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -94.81 348.68 3.78 -91.03 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: 0.90 Total: -3.12 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.68 Total: 16.63 kcal Atomic # 7 Polarization: -135.74 SS G_CDS: -4.91 Total: -140.65 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.50 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.03 Total: 55.11 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -0.88 Total: 5.51 kcal Total: -94.81 3.78 -91.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034047036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.333 kcal (2) G-P(sol) polarization free energy of solvation -94.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds