Wall clock time and date at job start Tue Mar 31 2020 13:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47460 * 2 1 4 4 C 1.34781 * 119.99809 * 83.70287 * 3 2 1 5 5 O 1.21623 * 119.99614 * 184.08615 * 4 3 2 6 6 C 1.47255 * 120.00043 * 4.07863 * 4 3 2 7 7 N 1.30557 * 125.54158 * 353.83123 * 6 4 3 8 8 C 1.30708 * 115.90209 * 179.71106 * 7 6 4 9 9 C 1.50707 * 122.10638 * 180.29775 * 8 7 6 10 10 C 1.34230 * 115.78706 * 0.52611 * 8 7 6 11 11 C 1.50694 * 125.45838 * 179.77484 * 10 8 7 12 12 S 1.71076 * 109.08884 * 359.50340 * 10 8 7 13 13 C 1.46499 * 120.00041 * 263.70673 * 3 2 1 14 14 H 1.08997 * 110.64008 * 1.67892 * 13 3 2 15 15 C 1.55155 * 110.72260 * 125.02395 * 13 3 2 16 16 C 1.54912 * 101.58113 * 153.86406 * 15 13 3 17 17 N 1.47418 * 104.83105 * 322.98829 * 16 15 13 18 18 C 1.36944 * 125.64598 * 204.16843 * 17 16 15 19 19 H 1.08009 * 119.99485 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99972 * 359.95564 * 18 17 16 21 21 N 1.31615 * 120.00189 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46897 * 89.99983 * 22 20 18 24 24 H 1.48492 * 109.46994 * 210.00246 * 22 20 18 25 25 H 1.48506 * 109.46998 * 330.00162 * 22 20 18 26 26 C 1.47024 * 108.70661 * 24.12706 * 17 16 15 27 27 H 1.08991 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46672 * 300.00323 * 1 2 3 29 29 H 1.09000 * 109.46521 * 60.00022 * 1 2 3 30 30 H 1.09003 * 109.47081 * 239.99568 * 2 1 3 31 31 H 1.09004 * 109.46980 * 120.00179 * 2 1 3 32 32 H 1.09003 * 109.46864 * 270.23932 * 9 8 7 33 33 H 1.08999 * 109.47078 * 30.23873 * 9 8 7 34 34 H 1.08995 * 109.47091 * 150.24287 * 9 8 7 35 35 H 1.08997 * 109.47329 * 179.71425 * 11 10 8 36 36 H 1.09004 * 109.46694 * 299.71686 * 11 10 8 37 37 H 1.09001 * 109.47146 * 59.71459 * 11 10 8 38 38 H 1.08997 * 111.00340 * 271.93930 * 15 13 3 39 39 H 1.08999 * 111.00567 * 35.78904 * 15 13 3 40 40 H 1.09001 * 110.36284 * 204.15006 * 16 15 13 41 41 H 1.08995 * 110.36557 * 81.82769 * 16 15 13 42 42 H 0.96998 * 119.99820 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.88317 * 239.51983 * 26 17 16 44 44 H 1.09004 * 109.87738 * 118.36044 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1224 2.0592 1.1602 5 8 2.4566 3.2285 1.1533 6 6 1.8312 1.3841 2.4361 7 7 1.3569 0.1745 2.5638 8 6 1.1743 -0.2409 3.7896 9 6 0.6397 -1.6157 4.0982 10 6 1.4885 0.6360 4.7561 11 6 1.3594 0.3882 6.2369 12 16 2.0661 2.0772 4.0378 13 6 2.3938 2.0254 -1.2611 14 1 2.2225 1.3532 -2.1018 15 6 1.6182 3.3559 -1.4500 16 6 2.5829 4.1510 -2.3649 17 7 3.9325 3.7932 -1.8917 18 6 5.0609 4.5528 -2.0494 19 1 6.0068 4.2010 -1.6645 20 6 4.9891 5.7747 -2.7043 21 7 3.8365 6.2033 -3.1731 22 14 6.5286 6.8105 -2.9200 23 1 7.1951 6.4468 -4.1962 24 1 6.1580 8.2482 -2.9472 25 1 7.4566 6.5599 -1.7880 26 6 3.8661 2.4862 -1.2216 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 -0.4484 -1.5791 4.1506 33 1 0.9426 -2.3081 3.3128 34 1 1.0383 -1.9542 5.0546 35 1 1.6910 1.2711 6.7833 36 1 0.3176 0.1799 6.4809 37 1 1.9761 -0.4656 6.5176 38 1 0.6626 3.1841 -1.9453 39 1 1.4763 3.8642 -0.4963 40 1 2.4138 5.2221 -2.2545 41 1 2.4534 3.8507 -3.4046 42 1 3.7863 7.0573 -3.6304 43 1 4.1969 2.5826 -0.1875 44 1 4.4938 1.7674 -1.7483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034047037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:11 Heat of formation + Delta-G solvation = 35.479324 kcal Electronic energy + Delta-G solvation = -25908.755726 eV Core-core repulsion = 22374.819502 eV Total energy + Delta-G solvation = -3533.936224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78465 -40.63347 -38.49270 -36.83128 -34.61506 -33.90465 -31.63214 -30.93729 -30.59325 -29.04254 -27.42629 -26.21327 -25.73270 -24.24147 -22.62291 -22.09298 -21.05220 -19.52306 -19.08350 -18.88817 -17.98059 -16.92503 -16.79784 -16.58212 -16.27660 -15.66668 -15.52968 -15.05643 -14.88499 -14.43798 -14.37801 -14.06579 -13.93959 -13.79755 -13.75784 -13.44122 -13.41851 -13.14093 -13.04137 -12.93673 -12.80103 -12.72686 -12.39515 -12.20805 -12.06540 -12.02871 -11.98583 -11.83330 -11.53081 -11.00786 -10.73664 -10.55490 -10.39410 -9.78858 -9.51490 -8.87344 -7.76397 -5.20666 -0.81594 0.07210 0.69577 1.27814 1.43711 1.47478 1.55964 1.92996 2.09286 2.50172 2.91066 3.32408 3.69433 3.73823 3.88444 3.91265 4.01851 4.05953 4.15983 4.26771 4.50992 4.59555 4.64887 4.70136 4.71565 4.72835 4.75862 4.86841 4.87897 4.92172 4.98090 5.01405 5.08118 5.11604 5.17463 5.37800 5.42822 5.50159 5.61606 5.75285 5.79664 6.27815 6.31529 6.48058 7.03144 7.10664 7.77725 8.42219 9.25543 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.003453 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.072752 B = 8105.894652 C = 8995.322487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.094 3.906 3 N -0.576 5.576 4 C 0.582 3.418 5 O -0.552 6.552 6 C -0.049 4.049 7 N -0.403 5.403 8 C 0.024 3.976 9 C -0.073 4.073 10 C -0.226 4.226 11 C -0.076 4.076 12 S 0.224 5.776 13 C 0.151 3.849 14 H 0.125 0.875 15 C -0.143 4.143 16 C 0.163 3.837 17 N -0.618 5.618 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.273 1.273 26 C 0.133 3.867 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.067 0.933 41 H -0.002 1.002 42 H 0.247 0.753 43 H 0.012 0.988 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -20.118 18.304 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 N -0.308 5.308 4 C 0.367 3.633 5 O -0.430 6.430 6 C -0.322 4.322 7 N -0.122 5.122 8 C -0.113 4.113 9 C -0.132 4.132 10 C -0.349 4.349 11 C -0.135 4.135 12 S 0.480 5.520 13 C 0.047 3.953 14 H 0.142 0.858 15 C -0.182 4.182 16 C 0.038 3.962 17 N -0.344 5.344 18 C -0.368 4.368 19 H 0.093 0.907 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.208 1.208 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.006 3.994 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.057 0.943 43 H 0.030 0.970 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.598 -18.630 18.065 27.669 hybrid contribution 0.542 0.319 -0.409 0.750 sum -9.056 -18.312 17.657 27.002 Atomic orbital electron populations 1.21939 0.94764 1.02917 1.00698 1.22264 0.95622 0.79674 1.05165 1.47837 1.62892 1.15453 1.04583 1.17196 0.77920 0.85303 0.82836 1.90926 1.48559 1.16741 1.86810 1.27110 1.11255 0.95796 0.98033 1.66956 1.11153 1.09959 1.24147 1.20821 1.03852 1.00854 0.85767 1.20474 1.01477 0.87710 1.03498 1.26087 1.06633 0.97680 1.04463 1.20482 1.04935 1.04038 0.84053 1.84229 1.55529 1.14761 0.97514 1.22086 0.93406 0.94537 0.85269 0.85769 1.23245 0.98250 0.96045 1.00700 1.21592 0.82501 0.99683 0.92434 1.44589 1.05585 1.18343 1.65876 1.19414 0.87516 0.99560 1.30283 0.90750 1.25663 1.00495 0.99000 1.00882 1.70065 1.24392 1.21287 1.44093 0.85004 0.78367 0.77488 0.78005 1.20754 1.21751 1.19857 1.21587 0.95396 0.87381 0.95014 0.89384 0.94206 0.93499 0.89051 0.87132 0.89648 0.90452 0.88591 0.90522 0.88022 0.87926 0.89931 0.91835 0.91450 0.98376 0.94306 0.97028 0.95358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.74 71.98 0.70 -2.32 16 2 C 0.09 2.22 5.71 86.38 0.49 2.71 16 3 N -0.58 -19.01 2.55 -795.27 -2.03 -21.04 16 4 C 0.58 21.71 6.70 86.61 0.58 22.29 16 5 O -0.55 -25.87 13.32 -4.10 -0.05 -25.92 16 6 C -0.05 -1.47 7.04 87.25 0.61 -0.86 16 7 N -0.40 -9.66 5.76 -178.24 -1.03 -10.69 16 8 C 0.02 0.44 6.68 41.81 0.28 0.72 16 9 C -0.07 -0.73 10.02 71.24 0.71 -0.01 16 10 C -0.23 -3.85 6.36 24.77 0.16 -3.69 16 11 C -0.08 -0.63 9.45 71.23 0.67 0.04 16 12 S 0.22 5.50 23.00 -56.49 -1.30 4.21 16 13 C 0.15 5.74 3.44 46.18 0.16 5.90 16 14 H 0.12 3.95 7.80 -2.39 -0.02 3.93 16 15 C -0.14 -6.25 6.39 31.99 0.20 -6.04 16 16 C 0.16 8.87 5.89 86.86 0.51 9.38 16 17 N -0.62 -35.38 3.39 -691.98 -2.35 -37.73 16 18 C -0.24 -14.66 10.27 84.03 0.86 -13.79 16 19 H 0.07 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 21 N -0.95 -60.06 10.09 21.65 0.22 -59.84 16 22 Si 0.98 48.65 29.55 68.60 2.03 50.68 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 26 C 0.13 6.28 6.51 86.73 0.56 6.84 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 0.96 7.08 -2.39 -0.02 0.94 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.80 7.84 -2.39 -0.02 1.78 16 31 H 0.11 2.59 5.31 -2.39 -0.01 2.57 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.52 7.33 -2.39 -0.02 0.50 16 35 H 0.08 0.60 8.13 -2.39 -0.02 0.58 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 0.50 7.92 -2.39 -0.02 0.48 16 38 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.06 3.10 5.67 -2.39 -0.01 3.09 16 40 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.01 0.60 6.40 -2.39 -0.02 0.59 16 44 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -79.10 359.32 3.47 -75.62 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.01 Total: 7.23 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.98 Total: 17.48 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.19 Total: -129.30 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.30 Total: 4.21 kcal Total: -79.10 3.47 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034047037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.103 kcal (2) G-P(sol) polarization free energy of solvation -79.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds