Wall clock time and date at job start Tue Mar 31 2020 13:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47093 * 2 1 4 4 C 1.34781 * 120.00008 * 270.00518 * 3 2 1 5 5 O 1.21617 * 120.00168 * 179.97438 * 4 3 2 6 6 C 1.47339 * 119.99655 * 359.97438 * 4 3 2 7 7 C 1.39246 * 123.08569 * 89.71496 * 6 4 3 8 8 C 1.50701 * 121.52696 * 359.97438 * 7 6 4 9 9 N 1.29510 * 116.93381 * 179.73569 * 7 6 4 10 10 S 1.69476 * 107.84829 * 0.49035 * 9 7 6 11 11 C 1.37891 * 123.08832 * 269.99868 * 6 4 3 12 12 C 1.50699 * 127.32016 * 359.97438 * 11 6 4 13 13 C 1.46495 * 120.00410 * 90.00042 * 3 2 1 14 14 H 1.09002 * 110.63884 * 358.31378 * 13 3 2 15 15 C 1.55161 * 110.72677 * 234.97988 * 13 3 2 16 16 C 1.55128 * 101.48673 * 205.96680 * 15 13 3 17 17 N 1.47422 * 104.72261 * 37.29274 * 16 15 13 18 18 C 1.36936 * 125.64993 * 155.81581 * 17 16 15 19 19 H 1.08004 * 119.99835 * 341.91714 * 18 17 16 20 20 C 1.38808 * 120.00290 * 162.19407 * 18 17 16 21 21 N 1.31614 * 120.00170 * 155.98065 * 20 18 17 22 22 Si 1.86803 * 119.99877 * 335.97195 * 20 18 17 23 23 H 1.48504 * 109.47081 * 84.66508 * 22 20 18 24 24 H 1.48494 * 109.47378 * 204.66521 * 22 20 18 25 25 H 1.48501 * 109.47065 * 324.66831 * 22 20 18 26 26 C 1.47019 * 108.70427 * 335.55332 * 17 16 15 27 27 H 1.09009 * 109.46986 * 299.99771 * 1 2 3 28 28 H 1.08997 * 109.47561 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47019 * 240.00187 * 2 1 3 31 31 H 1.08994 * 109.47167 * 119.99890 * 2 1 3 32 32 H 1.09001 * 109.47420 * 90.00503 * 8 7 6 33 33 H 1.09003 * 109.46703 * 209.99764 * 8 7 6 34 34 H 1.08999 * 109.47220 * 329.99767 * 8 7 6 35 35 H 1.09002 * 109.47592 * 89.99417 * 12 11 6 36 36 H 1.09004 * 109.47152 * 209.99749 * 12 11 6 37 37 H 1.09000 * 109.46759 * 329.99385 * 12 11 6 38 38 H 1.09000 * 110.99754 * 324.20544 * 15 13 3 39 39 H 1.09000 * 111.00450 * 88.05371 * 15 13 3 40 40 H 1.08996 * 110.49684 * 278.44797 * 16 15 13 41 41 H 1.09003 * 110.33855 * 156.05357 * 16 15 13 42 42 H 0.97005 * 119.99825 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.89003 * 120.70405 * 26 17 16 44 44 H 1.09006 * 109.88481 * 241.87171 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6478 3.1634 -1.1673 6 6 1.9977 1.3219 -2.4432 7 6 0.7695 1.3471 -3.0987 8 6 -0.4089 2.0991 -2.5357 9 7 0.6878 0.6986 -4.2168 10 16 2.1955 -0.0160 -4.5141 11 6 2.9618 0.5822 -3.0950 12 6 4.3848 0.3482 -2.6575 13 6 2.2625 2.0719 1.2686 14 1 2.0040 1.4306 2.1112 15 6 1.4740 3.4069 1.3277 16 6 2.3409 4.2344 2.3127 17 7 3.7310 3.8646 1.9900 18 6 4.8386 4.6310 2.2369 19 1 4.7318 5.6886 2.4277 20 6 6.0991 4.0497 2.2363 21 7 7.1635 4.7866 1.9992 22 14 6.2847 2.2215 2.5720 23 1 6.0829 1.4636 1.3110 24 1 7.6460 1.9507 3.0998 25 1 5.2725 1.7966 3.5722 26 6 3.7318 2.5339 1.3649 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 -0.4017 3.1215 -2.9135 33 1 -1.3328 1.6063 -2.8388 34 1 -0.3447 2.1133 -1.4477 35 1 4.4319 -0.5472 -2.0377 36 1 5.0178 0.2164 -3.5351 37 1 4.7341 1.2064 -2.0833 38 1 1.4323 3.8797 0.3465 39 1 0.4720 3.2514 1.7276 40 1 2.1070 3.9681 3.3434 41 1 2.1847 5.3010 2.1507 42 1 8.0444 4.3803 1.9992 43 1 4.1679 2.5929 0.3676 44 1 4.3004 1.8359 1.9796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034053146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:57 Heat of formation + Delta-G solvation = 48.498327 kcal Electronic energy + Delta-G solvation = -26974.731543 eV Core-core repulsion = 23441.359866 eV Total energy + Delta-G solvation = -3533.371677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79556 -38.77426 -36.89192 -35.61068 -33.47126 -32.40854 -30.81437 -29.86898 -29.43071 -28.51697 -27.39851 -24.42912 -23.79742 -22.74998 -21.65746 -20.36652 -20.28045 -18.55974 -17.89197 -17.09049 -16.75607 -16.30994 -15.40918 -14.98719 -14.70228 -14.68207 -14.12429 -14.01513 -13.67714 -13.55455 -13.53077 -13.16263 -12.90728 -12.78719 -12.72652 -12.57684 -12.39348 -12.22508 -12.09747 -11.73959 -11.40722 -11.35184 -11.15277 -10.97584 -10.94697 -10.85519 -10.61065 -10.30269 -9.97893 -9.57370 -9.39197 -9.28544 -8.79333 -8.57764 -8.44480 -6.96104 -5.87458 -3.13615 0.38395 1.17143 1.55867 1.99197 2.66607 3.05749 3.35774 3.47003 3.51827 4.16662 4.46107 4.60747 4.71904 4.76303 4.98201 5.01906 5.02994 5.07118 5.19638 5.24676 5.26812 5.27705 5.31718 5.38988 5.44350 5.54391 5.57037 5.61293 5.64000 5.79786 5.83315 5.90469 6.03286 6.09567 6.28323 6.33711 6.40648 6.52241 6.64801 6.91227 7.02997 7.44579 7.80452 8.28116 8.38839 8.91654 9.77408 10.26726 11.29517 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.004866 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.550727 B = 5753.259593 C = 6447.955586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.582 3.418 5 O -0.490 6.490 6 C -0.206 4.206 7 C 0.156 3.844 8 C -0.096 4.096 9 N -0.468 5.468 10 S 0.269 5.731 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.135 3.865 14 H 0.095 0.905 15 C -0.145 4.145 16 C 0.138 3.862 17 N -0.602 5.602 18 C -0.233 4.233 19 H 0.092 0.908 20 C 0.020 3.980 21 N -0.908 5.908 22 Si 0.886 3.114 23 H -0.289 1.289 24 H -0.305 1.305 25 H -0.281 1.281 26 C 0.118 3.882 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.050 0.950 42 H 0.261 0.739 43 H 0.052 0.948 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 -14.214 -9.016 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.365 3.635 5 O -0.363 6.363 6 C -0.227 4.227 7 C -0.022 4.022 8 C -0.157 4.157 9 N -0.289 5.289 10 S 0.425 5.575 11 C -0.263 4.263 12 C -0.149 4.149 13 C 0.031 3.969 14 H 0.113 0.887 15 C -0.184 4.184 16 C 0.012 3.988 17 N -0.329 5.329 18 C -0.361 4.361 19 H 0.110 0.890 20 C -0.178 4.178 21 N -0.552 5.552 22 Si 0.719 3.281 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.208 1.208 26 C -0.008 4.008 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -15.031 -14.536 -10.971 23.613 hybrid contribution 0.569 -0.359 1.786 1.909 sum -14.462 -14.894 -9.184 22.701 Atomic orbital electron populations 1.22433 0.95835 1.02426 1.03213 1.21540 0.94626 0.82558 1.03046 1.47923 1.65704 1.13947 1.05532 1.17367 0.78068 0.85867 0.82170 1.90939 1.42529 1.16399 1.86471 1.20276 0.94042 1.07041 1.01305 1.21210 0.95195 0.95381 0.90452 1.20814 0.93573 0.99853 1.01442 1.76357 1.15519 1.18326 1.18706 1.83929 1.02026 1.49696 1.21841 1.26076 1.01262 0.99166 0.99833 1.20468 0.87492 1.04272 1.02702 1.22195 0.97190 0.93797 0.83669 0.88747 1.23233 0.97224 0.95555 1.02354 1.21582 0.84742 0.97767 0.94693 1.44550 1.02423 1.16861 1.69022 1.18660 0.82659 0.91590 1.43148 0.89008 1.24908 0.95103 0.97093 1.00697 1.69878 0.98275 1.35828 1.51204 0.86892 0.75043 0.87923 0.78253 1.21718 1.23332 1.20829 1.21858 0.92866 0.88330 0.97735 0.91811 0.91595 0.91638 0.90886 0.90069 0.89247 0.89779 0.89444 0.89314 0.89764 0.89169 0.89049 0.91872 0.95872 0.93158 0.92892 0.93016 0.96142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 10.13 37.16 0.38 -1.17 16 2 C 0.11 1.11 5.93 -4.04 -0.02 1.09 16 3 N -0.60 -8.66 2.54 -165.32 -0.42 -9.08 16 4 C 0.58 9.52 4.73 -12.56 -0.06 9.46 16 5 O -0.49 -10.33 13.45 5.26 0.07 -10.26 16 6 C -0.21 -2.86 3.88 -105.95 -0.41 -3.27 16 7 C 0.16 1.96 6.24 -83.20 -0.52 1.44 16 8 C -0.10 -0.98 8.77 36.01 0.32 -0.67 16 9 N -0.47 -5.95 11.97 32.50 0.39 -5.56 16 10 S 0.27 2.94 23.69 -107.50 -2.55 0.40 16 11 C -0.13 -1.65 6.27 -34.44 -0.22 -1.87 16 12 C -0.09 -1.03 10.19 36.01 0.37 -0.66 16 13 C 0.13 2.28 3.44 -66.10 -0.23 2.05 16 14 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 15 C -0.14 -2.43 6.41 -24.46 -0.16 -2.59 16 16 C 0.14 2.81 7.24 -2.41 -0.02 2.79 16 17 N -0.60 -15.23 3.21 -169.93 -0.55 -15.78 16 18 C -0.23 -6.90 10.56 -15.06 -0.16 -7.06 16 19 H 0.09 2.86 8.06 -52.48 -0.42 2.43 16 20 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 21 N -0.91 -28.86 13.97 55.49 0.78 -28.08 16 22 Si 0.89 23.29 24.39 -169.99 -4.15 19.15 16 23 H -0.29 -7.35 6.84 56.52 0.39 -6.96 16 24 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 25 H -0.28 -7.20 6.87 56.52 0.39 -6.81 16 26 C 0.12 2.68 4.39 -3.07 -0.01 2.67 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.07 0.59 4.11 -51.93 -0.21 0.37 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 31 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.89 5.56 -51.93 -0.29 0.60 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16 38 H 0.09 1.71 5.81 -51.93 -0.30 1.41 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.05 1.31 6.28 -51.93 -0.33 0.99 16 44 H 0.02 0.51 3.54 -51.93 -0.18 0.32 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -35.36 352.87 -8.22 -43.58 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.28 Total: -2.41 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.84 Total: 2.73 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.20 Total: -58.50 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.15 Total: 19.15 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.55 Total: 0.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.36 -8.22 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034053146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.080 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds