Wall clock time and date at job start Tue Mar 31 2020 13:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47093 * 2 1 4 4 C 1.34781 * 120.00008 * 270.00518 * 3 2 1 5 5 O 1.21617 * 120.00168 * 179.97438 * 4 3 2 6 6 C 1.47339 * 119.99655 * 359.97438 * 4 3 2 7 7 C 1.39246 * 123.08569 * 89.71496 * 6 4 3 8 8 C 1.50701 * 121.52696 * 359.97438 * 7 6 4 9 9 N 1.29510 * 116.93381 * 179.73569 * 7 6 4 10 10 S 1.69476 * 107.84829 * 0.49035 * 9 7 6 11 11 C 1.37891 * 123.08832 * 269.99868 * 6 4 3 12 12 C 1.50699 * 127.32016 * 359.97438 * 11 6 4 13 13 C 1.46495 * 120.00410 * 90.00042 * 3 2 1 14 14 H 1.09002 * 110.63884 * 358.31378 * 13 3 2 15 15 C 1.55161 * 110.72677 * 234.97988 * 13 3 2 16 16 C 1.55128 * 101.48673 * 205.96680 * 15 13 3 17 17 N 1.47422 * 104.72261 * 37.29274 * 16 15 13 18 18 C 1.36936 * 125.64993 * 155.81581 * 17 16 15 19 19 H 1.08004 * 119.99835 * 341.91714 * 18 17 16 20 20 C 1.38808 * 120.00290 * 162.19407 * 18 17 16 21 21 N 1.31614 * 120.00170 * 155.98065 * 20 18 17 22 22 Si 1.86803 * 119.99877 * 335.97195 * 20 18 17 23 23 H 1.48504 * 109.47081 * 84.66508 * 22 20 18 24 24 H 1.48494 * 109.47378 * 204.66521 * 22 20 18 25 25 H 1.48501 * 109.47065 * 324.66831 * 22 20 18 26 26 C 1.47019 * 108.70427 * 335.55332 * 17 16 15 27 27 H 1.09009 * 109.46986 * 299.99771 * 1 2 3 28 28 H 1.08997 * 109.47561 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47019 * 240.00187 * 2 1 3 31 31 H 1.08994 * 109.47167 * 119.99890 * 2 1 3 32 32 H 1.09001 * 109.47420 * 90.00503 * 8 7 6 33 33 H 1.09003 * 109.46703 * 209.99764 * 8 7 6 34 34 H 1.08999 * 109.47220 * 329.99767 * 8 7 6 35 35 H 1.09002 * 109.47592 * 89.99417 * 12 11 6 36 36 H 1.09004 * 109.47152 * 209.99749 * 12 11 6 37 37 H 1.09000 * 109.46759 * 329.99385 * 12 11 6 38 38 H 1.09000 * 110.99754 * 324.20544 * 15 13 3 39 39 H 1.09000 * 111.00450 * 88.05371 * 15 13 3 40 40 H 1.08996 * 110.49684 * 278.44797 * 16 15 13 41 41 H 1.09003 * 110.33855 * 156.05357 * 16 15 13 42 42 H 0.97005 * 119.99825 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.89003 * 120.70405 * 26 17 16 44 44 H 1.09006 * 109.88481 * 241.87171 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6478 3.1634 -1.1673 6 6 1.9977 1.3219 -2.4432 7 6 0.7695 1.3471 -3.0987 8 6 -0.4089 2.0991 -2.5357 9 7 0.6878 0.6986 -4.2168 10 16 2.1955 -0.0160 -4.5141 11 6 2.9618 0.5822 -3.0950 12 6 4.3848 0.3482 -2.6575 13 6 2.2625 2.0719 1.2686 14 1 2.0040 1.4306 2.1112 15 6 1.4740 3.4069 1.3277 16 6 2.3409 4.2344 2.3127 17 7 3.7310 3.8646 1.9900 18 6 4.8386 4.6310 2.2369 19 1 4.7318 5.6886 2.4277 20 6 6.0991 4.0497 2.2363 21 7 7.1635 4.7866 1.9992 22 14 6.2847 2.2215 2.5720 23 1 6.0829 1.4636 1.3110 24 1 7.6460 1.9507 3.0998 25 1 5.2725 1.7966 3.5722 26 6 3.7318 2.5339 1.3649 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 -0.4017 3.1215 -2.9135 33 1 -1.3328 1.6063 -2.8388 34 1 -0.3447 2.1133 -1.4477 35 1 4.4319 -0.5472 -2.0377 36 1 5.0178 0.2164 -3.5351 37 1 4.7341 1.2064 -2.0833 38 1 1.4323 3.8797 0.3465 39 1 0.4720 3.2514 1.7276 40 1 2.1070 3.9681 3.3434 41 1 2.1847 5.3010 2.1507 42 1 8.0444 4.3803 1.9992 43 1 4.1679 2.5929 0.3676 44 1 4.3004 1.8359 1.9796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034053146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:56 Heat of formation + Delta-G solvation = 24.016585 kcal Electronic energy + Delta-G solvation = -26975.793151 eV Core-core repulsion = 23441.359866 eV Total energy + Delta-G solvation = -3534.433285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95574 -39.94331 -38.41387 -36.83515 -34.59323 -34.27874 -32.15355 -30.95257 -30.74105 -29.75301 -28.69652 -26.32542 -24.85110 -23.77942 -22.88376 -22.02420 -21.51896 -19.56828 -19.03234 -18.93439 -18.12773 -17.63757 -17.07607 -16.17372 -15.89241 -15.82430 -15.53879 -15.06863 -14.94055 -14.80353 -14.52551 -14.47241 -14.38892 -14.30406 -13.88768 -13.66474 -13.48386 -13.38922 -13.20204 -13.07406 -12.86735 -12.73631 -12.51652 -12.33247 -12.25146 -12.14815 -11.92388 -11.76601 -11.63479 -11.37996 -10.79773 -10.71927 -10.43349 -9.71635 -9.69411 -9.05379 -8.19588 -5.42451 -0.57236 0.23813 0.64298 1.02134 1.23899 1.31957 1.43149 1.47321 1.92057 2.40113 2.99936 3.25828 3.37929 3.47800 3.73315 3.81010 3.86357 3.98720 4.11771 4.15634 4.25492 4.34637 4.41988 4.44327 4.45157 4.47931 4.53217 4.56648 4.65572 4.76307 4.77460 4.89818 4.95158 4.97810 5.00040 5.03097 5.10180 5.37048 5.40784 5.49497 5.65330 5.68375 6.08594 6.31110 6.75989 7.08704 7.54184 8.10938 9.01309 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.004866 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.550727 B = 5753.259593 C = 6447.955586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 N -0.591 5.591 4 C 0.586 3.414 5 O -0.551 6.551 6 C -0.226 4.226 7 C 0.156 3.844 8 C -0.095 4.095 9 N -0.488 5.488 10 S 0.322 5.678 11 C -0.140 4.140 12 C -0.090 4.090 13 C 0.146 3.854 14 H 0.133 0.867 15 C -0.129 4.129 16 C 0.129 3.871 17 N -0.622 5.622 18 C -0.233 4.233 19 H 0.055 0.945 20 C -0.042 4.042 21 N -0.957 5.957 22 Si 0.957 3.043 23 H -0.280 1.280 24 H -0.307 1.307 25 H -0.263 1.263 26 C 0.115 3.885 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.017 0.983 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -17.967 -9.073 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.023 4.023 3 N -0.323 5.323 4 C 0.371 3.629 5 O -0.428 6.428 6 C -0.246 4.246 7 C -0.022 4.022 8 C -0.156 4.156 9 N -0.310 5.310 10 S 0.478 5.522 11 C -0.270 4.270 12 C -0.149 4.149 13 C 0.042 3.958 14 H 0.151 0.849 15 C -0.168 4.168 16 C 0.005 3.995 17 N -0.349 5.349 18 C -0.362 4.362 19 H 0.073 0.927 20 C -0.236 4.236 21 N -0.604 5.604 22 Si 0.787 3.213 23 H -0.207 1.207 24 H -0.235 1.235 25 H -0.189 1.189 26 C -0.011 4.011 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -17.697 -18.346 -11.021 27.771 hybrid contribution 1.370 0.872 1.705 2.354 sum -16.327 -17.475 -9.317 25.666 Atomic orbital electron populations 1.22389 0.93877 1.03847 1.03239 1.21879 0.96205 0.80044 1.04207 1.47985 1.64814 1.15304 1.04148 1.17692 0.76704 0.85115 0.83357 1.90915 1.45315 1.19138 1.87416 1.20180 0.95222 1.08342 1.00904 1.21331 0.95296 0.95294 0.90235 1.20884 0.93731 0.99549 1.01455 1.76278 1.16916 1.18976 1.18780 1.83733 1.00543 1.48138 1.19761 1.26317 1.01419 0.98820 1.00485 1.20512 0.87367 1.03434 1.03584 1.22107 0.92894 0.94768 0.86016 0.84906 1.23122 0.98791 0.94476 1.00379 1.21841 0.82834 0.97911 0.96939 1.44666 1.03121 1.17721 1.69381 1.18621 0.84644 0.90876 1.42068 0.92716 1.25624 0.94715 1.02125 1.01174 1.70019 0.98814 1.38155 1.53457 0.85766 0.75077 0.81895 0.78592 1.20705 1.23533 1.18876 1.21909 0.97009 0.86940 0.95226 0.91221 0.92152 0.89498 0.90483 0.88210 0.89705 0.87750 0.89282 0.87226 0.87499 0.92958 0.91287 0.87041 0.93472 0.94492 0.92992 0.96527 0.96717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 10.13 71.98 0.73 -1.50 16 2 C 0.10 1.69 5.93 86.38 0.51 2.20 16 3 N -0.59 -15.80 2.54 -795.19 -2.02 -17.82 16 4 C 0.59 18.91 4.73 86.64 0.41 19.31 16 5 O -0.55 -24.00 13.45 -4.08 -0.05 -24.05 16 6 C -0.23 -6.01 3.88 -20.72 -0.08 -6.09 16 7 C 0.16 3.66 6.24 43.14 0.27 3.93 16 8 C -0.10 -1.79 8.77 71.24 0.62 -1.16 16 9 N -0.49 -11.35 11.97 -51.09 -0.61 -11.97 16 10 S 0.32 6.27 23.69 -56.49 -1.34 4.93 16 11 C -0.14 -3.27 6.27 25.60 0.16 -3.11 16 12 C -0.09 -1.96 10.19 71.24 0.73 -1.23 16 13 C 0.15 4.55 3.44 46.18 0.16 4.71 16 14 H 0.13 3.18 7.88 -2.39 -0.02 3.17 16 15 C -0.13 -4.06 6.41 32.06 0.21 -3.85 16 16 C 0.13 5.17 7.24 86.93 0.63 5.80 16 17 N -0.62 -31.90 3.21 -691.55 -2.22 -34.12 16 18 C -0.23 -14.39 10.56 84.03 0.89 -13.50 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.04 -2.64 5.43 84.86 0.46 -2.18 16 21 N -0.96 -63.62 13.97 21.65 0.30 -63.31 16 22 Si 0.96 49.10 24.39 68.60 1.67 50.77 16 23 H -0.28 -13.77 6.84 99.48 0.68 -13.09 16 24 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 25 H -0.26 -12.59 6.87 99.48 0.68 -11.91 16 26 C 0.11 5.16 4.39 86.73 0.38 5.54 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.86 4.11 -2.39 -0.01 0.85 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.29 6.58 -2.39 -0.02 1.28 16 31 H 0.10 1.39 7.96 -2.39 -0.02 1.37 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.63 5.56 -2.39 -0.01 1.62 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 38 H 0.07 2.55 5.81 -2.39 -0.01 2.53 16 39 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 43 H 0.02 0.87 6.28 -2.39 -0.01 0.85 16 44 H 0.02 0.71 3.54 -2.38 -0.01 0.70 16 Total: -1.00 -82.35 352.87 2.77 -79.58 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.97 Total: 7.11 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.07 Total: 8.87 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -4.55 Total: -127.21 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.67 Total: 50.77 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -1.34 Total: 4.93 kcal Total: -82.35 2.77 -79.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034053146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.598 kcal (2) G-P(sol) polarization free energy of solvation -82.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds