Wall clock time and date at job start Tue Mar 31 2020 14:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48499 * 109.47339 * 239.99910 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47274 * 119.99242 * 3 2 1 7 7 C 1.38816 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99483 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47525 * 125.64660 * 359.96721 * 9 7 2 11 11 C 1.55015 * 104.88009 * 203.98309 * 10 9 7 12 12 C 1.54537 * 101.56214 * 323.66908 * 11 10 9 13 13 C 1.47185 * 125.65902 * 179.97438 * 9 7 2 14 14 C 1.52274 * 110.15988 * 276.38337 * 12 11 10 15 15 C 1.53316 * 109.41689 * 297.17341 * 14 12 11 16 16 N 1.46924 * 108.70862 * 306.49364 * 15 14 12 17 17 C 1.34773 * 120.56581 * 234.24915 * 16 15 14 18 18 O 1.21270 * 120.00281 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99349 * 359.97433 * 17 16 15 20 20 H 1.08997 * 115.55197 * 34.42261 * 19 17 16 21 21 C 1.52997 * 117.50029 * 248.74642 * 19 17 16 22 22 C 1.53003 * 117.49455 * 180.08649 * 19 17 16 23 23 H 1.08992 * 117.50069 * 0.02562 * 22 19 17 24 24 N 1.46503 * 117.49723 * 214.98094 * 22 19 17 25 25 O 1.21796 * 120.00023 * 120.00274 * 24 22 19 26 26 O 1.21806 * 120.00005 * 300.00247 * 24 22 19 27 27 C 1.46940 * 118.87552 * 54.22382 * 16 15 14 28 28 C 1.52272 * 110.15463 * 153.25879 * 12 11 10 29 29 H 0.97002 * 119.99402 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.33332 * 85.14640 * 10 9 7 31 31 H 1.09002 * 110.39045 * 322.85170 * 10 9 7 32 32 H 1.09002 * 111.01550 * 205.58795 * 11 10 9 33 33 H 1.09000 * 111.01318 * 81.74855 * 11 10 9 34 34 H 1.08997 * 109.91188 * 59.14276 * 13 9 7 35 35 H 1.09008 * 109.90518 * 297.88639 * 13 9 7 36 36 H 1.08995 * 109.48261 * 57.16099 * 14 12 11 37 37 H 1.08999 * 109.47718 * 177.19398 * 14 12 11 38 38 H 1.08994 * 109.59877 * 186.72655 * 15 14 12 39 39 H 1.09003 * 109.72455 * 66.33410 * 15 14 12 40 40 H 1.08998 * 117.49654 * 0.02562 * 21 19 17 41 41 H 1.09003 * 117.50033 * 145.00128 * 21 19 17 42 42 H 1.08995 * 109.59933 * 185.99729 * 27 16 15 43 43 H 1.09009 * 109.72745 * 65.61098 * 27 16 15 44 44 H 1.09004 * 109.47678 * 182.79763 * 28 12 11 45 45 H 1.08996 * 109.48593 * 302.83547 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1426 -2.5331 0.0007 11 6 -0.4041 -3.9345 0.6096 12 6 0.7806 -4.7462 0.0389 13 6 1.9320 -3.7291 0.0005 14 6 0.4520 -5.2386 -1.3641 15 6 -0.7491 -6.1894 -1.3022 16 7 -0.4642 -7.2454 -0.3212 17 6 -0.5537 -8.5448 -0.6675 18 8 -0.3157 -9.4081 0.1503 19 6 -0.9494 -8.9249 -2.0710 20 1 -0.5989 -8.2549 -2.8561 21 6 -2.3148 -9.5873 -2.2652 22 6 -1.0352 -10.4164 -2.4014 23 1 -0.8059 -11.1226 -1.6035 24 7 -0.6405 -10.8346 -3.7488 25 8 0.2761 -11.6227 -3.8978 26 8 -1.2289 -10.3941 -4.7201 27 6 -0.0794 -6.8608 1.0438 28 6 1.1175 -5.9057 0.9666 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5281 -2.4842 -1.0177 31 1 -0.6005 -1.7601 0.6178 32 1 -1.3564 -4.3385 0.2659 33 1 -0.3664 -3.9008 1.6984 34 1 2.5639 -3.8508 0.8803 35 1 2.5218 -3.8697 -0.9054 36 1 0.2095 -4.3876 -2.0005 37 1 1.3126 -5.7664 -1.7749 38 1 -0.9127 -6.6360 -2.2829 39 1 -1.6392 -5.6385 -0.9982 40 1 -2.9270 -9.7478 -1.3778 41 1 -2.8626 -9.3531 -3.1780 42 1 0.1982 -7.7500 1.6097 43 1 -0.9148 -6.3612 1.5346 44 1 1.9849 -6.4406 0.5797 45 1 1.3411 -5.5219 1.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035187189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:23 Heat of formation + Delta-G solvation = 17.793310 kcal Electronic energy + Delta-G solvation = -28106.218622 eV Core-core repulsion = 24128.762604 eV Total energy + Delta-G solvation = -3977.456018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.65323 -40.88797 -39.20129 -37.27668 -36.58401 -35.97287 -33.28746 -31.51746 -30.75556 -28.77080 -28.39165 -27.03881 -25.20830 -24.01994 -23.52121 -22.68643 -22.23834 -20.27928 -19.98041 -19.51097 -18.79849 -18.18896 -17.64603 -17.25208 -16.69251 -16.35467 -15.67094 -15.24872 -14.76300 -14.61369 -14.17164 -13.98845 -13.84648 -13.47885 -13.21128 -12.94031 -12.71958 -12.36583 -12.20085 -12.03408 -11.81728 -11.80716 -11.60973 -11.39763 -11.37336 -11.30336 -11.11996 -11.06496 -10.84127 -10.76088 -10.36041 -10.28658 -10.10068 -9.89872 -9.77114 -9.51654 -8.85495 -8.69293 -6.88411 -5.70696 -3.11937 0.08732 1.15340 1.84214 2.49971 2.72179 3.27480 3.36583 3.41208 3.42088 3.60094 3.83107 4.08618 4.43967 4.55448 4.67637 4.82386 4.85326 4.88590 4.96388 5.03253 5.19191 5.28268 5.34498 5.44126 5.56329 5.62654 5.77408 5.81852 5.94681 5.97085 6.00969 6.05138 6.15839 6.26128 6.35410 6.50916 6.54242 6.73833 6.85319 7.01331 7.27139 7.43431 7.57264 7.66229 7.79752 8.30683 9.17184 9.78012 10.42888 11.33129 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.002622 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.081184 B =10674.882472 C =11056.925788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.154 3.846 11 C -0.137 4.137 12 C -0.070 4.070 13 C 0.147 3.853 14 C -0.116 4.116 15 C 0.101 3.899 16 N -0.591 5.591 17 C 0.544 3.456 18 O -0.540 6.540 19 C -0.146 4.146 20 H 0.149 0.851 21 C -0.105 4.105 22 C -0.063 4.063 23 H 0.185 0.815 24 N 0.011 4.989 25 O -0.151 6.151 26 O -0.161 6.161 27 C 0.114 3.886 28 C -0.116 4.116 29 H 0.252 0.748 30 H 0.010 0.990 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 -17.704 -2.321 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.030 3.970 11 C -0.176 4.176 12 C -0.071 4.071 13 C 0.021 3.979 14 C -0.154 4.154 15 C -0.021 4.021 16 N -0.322 5.322 17 C 0.330 3.670 18 O -0.418 6.418 19 C -0.169 4.169 20 H 0.166 0.834 21 C -0.143 4.143 22 C -0.163 4.163 23 H 0.202 0.798 24 N 0.533 4.467 25 O -0.371 6.371 26 O -0.378 6.378 27 C -0.008 4.008 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.408 -17.673 -1.170 18.835 hybrid contribution 0.758 0.844 -0.409 1.206 sum -5.649 -16.830 -1.579 17.823 Atomic orbital electron populations 1.69790 1.04866 1.24870 1.57646 1.24771 0.95727 0.97680 1.02436 0.86162 0.78425 0.83058 0.77909 1.21232 1.21561 1.21177 1.19031 0.90467 0.82527 1.43107 0.90647 1.44542 1.01906 0.99630 1.86862 1.21926 0.84671 0.92448 0.97983 1.23105 0.95551 0.98929 1.00010 1.20985 0.97938 0.94291 0.93887 1.21240 0.93206 0.85662 0.97785 1.21769 0.96926 0.98834 0.97852 1.22066 0.99608 0.88906 0.91526 1.48014 1.66355 1.04699 1.13179 1.19056 0.77812 0.82951 0.87164 1.90733 1.50693 1.48719 1.51623 1.22863 1.03220 0.91195 0.99574 0.83369 1.23674 0.88704 0.94960 1.06987 1.25017 1.08149 0.98349 0.84765 0.79753 1.43791 0.99586 0.99417 1.03934 1.94593 1.20529 1.29019 1.92951 1.94553 1.53917 1.57504 1.31858 1.21768 0.98009 0.99402 0.81589 1.21808 0.97066 0.95823 1.00763 0.93711 0.97156 0.87847 0.92437 0.92116 0.95864 0.96203 0.89457 0.91918 0.90080 0.89881 0.84739 0.84158 0.89125 0.90639 0.91900 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.04 10.28 -15.06 -0.15 -6.19 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.64 3.40 -170.19 -0.58 -15.22 16 10 C 0.15 3.46 5.57 -2.42 -0.01 3.44 16 11 C -0.14 -2.26 4.92 -24.86 -0.12 -2.39 16 12 C -0.07 -1.05 0.55 -154.09 -0.09 -1.14 16 13 C 0.15 2.87 6.42 -3.32 -0.02 2.84 16 14 C -0.12 -1.49 4.74 -26.94 -0.13 -1.62 16 15 C 0.10 0.99 6.01 -3.65 -0.02 0.97 16 16 N -0.59 -6.25 2.96 -172.61 -0.51 -6.77 16 17 C 0.54 5.84 7.48 -10.99 -0.08 5.76 16 18 O -0.54 -7.38 15.66 5.57 0.09 -7.29 16 19 C -0.15 -1.17 5.00 -91.77 -0.46 -1.62 16 20 H 0.15 1.06 6.57 -51.93 -0.34 0.72 16 21 C -0.11 -0.59 9.72 -26.69 -0.26 -0.85 16 22 C -0.06 -0.53 6.43 -67.89 -0.44 -0.96 16 23 H 0.19 1.53 7.67 -51.93 -0.40 1.13 16 24 N 0.01 0.12 4.33 -4.86 -0.02 0.10 16 25 O -0.15 -1.91 19.24 -29.46 -0.57 -2.48 16 26 O -0.16 -1.81 18.28 -29.46 -0.54 -2.35 16 27 C 0.11 1.28 6.14 -3.64 -0.02 1.26 16 28 C -0.12 -1.47 4.72 -26.94 -0.13 -1.60 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.01 0.25 7.75 -51.93 -0.40 -0.16 16 31 H 0.10 2.68 5.89 -51.93 -0.31 2.38 16 32 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 33 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 34 H 0.02 0.46 7.78 -51.93 -0.40 0.06 16 35 H 0.02 0.40 7.83 -51.92 -0.41 -0.01 16 36 H 0.09 1.27 7.47 -51.93 -0.39 0.89 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.60 5.50 -51.93 -0.29 0.32 16 39 H 0.08 0.80 6.48 -51.93 -0.34 0.46 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.14 0.62 7.63 -51.93 -0.40 0.22 16 42 H 0.09 1.06 6.99 -51.93 -0.36 0.69 16 43 H 0.08 0.81 7.56 -51.92 -0.39 0.42 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -31.53 356.20 -9.64 -41.17 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.39 Total: -1.15 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.03 Total: -2.49 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.55 Total: -47.37 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.02 Total: -12.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.53 -9.64 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035187189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds