Wall clock time and date at job start Tue Mar 31 2020 14:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48499 * 109.47339 * 239.99910 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47274 * 119.99242 * 3 2 1 7 7 C 1.38816 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99483 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47525 * 125.64660 * 359.96721 * 9 7 2 11 11 C 1.55015 * 104.88009 * 203.98309 * 10 9 7 12 12 C 1.54537 * 101.56214 * 323.66908 * 11 10 9 13 13 C 1.47185 * 125.65902 * 179.97438 * 9 7 2 14 14 C 1.52274 * 110.15988 * 276.38337 * 12 11 10 15 15 C 1.53316 * 109.41689 * 297.17341 * 14 12 11 16 16 N 1.46924 * 108.70862 * 306.49364 * 15 14 12 17 17 C 1.34773 * 120.56581 * 234.24915 * 16 15 14 18 18 O 1.21270 * 120.00281 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99349 * 359.97433 * 17 16 15 20 20 H 1.08997 * 115.55197 * 34.42261 * 19 17 16 21 21 C 1.52997 * 117.50029 * 248.74642 * 19 17 16 22 22 C 1.53003 * 117.49455 * 180.08649 * 19 17 16 23 23 H 1.08992 * 117.50069 * 0.02562 * 22 19 17 24 24 N 1.46503 * 117.49723 * 214.98094 * 22 19 17 25 25 O 1.21796 * 120.00023 * 120.00274 * 24 22 19 26 26 O 1.21806 * 120.00005 * 300.00247 * 24 22 19 27 27 C 1.46940 * 118.87552 * 54.22382 * 16 15 14 28 28 C 1.52272 * 110.15463 * 153.25879 * 12 11 10 29 29 H 0.97002 * 119.99402 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.33332 * 85.14640 * 10 9 7 31 31 H 1.09002 * 110.39045 * 322.85170 * 10 9 7 32 32 H 1.09002 * 111.01550 * 205.58795 * 11 10 9 33 33 H 1.09000 * 111.01318 * 81.74855 * 11 10 9 34 34 H 1.08997 * 109.91188 * 59.14276 * 13 9 7 35 35 H 1.09008 * 109.90518 * 297.88639 * 13 9 7 36 36 H 1.08995 * 109.48261 * 57.16099 * 14 12 11 37 37 H 1.08999 * 109.47718 * 177.19398 * 14 12 11 38 38 H 1.08994 * 109.59877 * 186.72655 * 15 14 12 39 39 H 1.09003 * 109.72455 * 66.33410 * 15 14 12 40 40 H 1.08998 * 117.49654 * 0.02562 * 21 19 17 41 41 H 1.09003 * 117.50033 * 145.00128 * 21 19 17 42 42 H 1.08995 * 109.59933 * 185.99729 * 27 16 15 43 43 H 1.09009 * 109.72745 * 65.61098 * 27 16 15 44 44 H 1.09004 * 109.47678 * 182.79763 * 28 12 11 45 45 H 1.08996 * 109.48593 * 302.83547 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1426 -2.5331 0.0007 11 6 -0.4041 -3.9345 0.6096 12 6 0.7806 -4.7462 0.0389 13 6 1.9320 -3.7291 0.0005 14 6 0.4520 -5.2386 -1.3641 15 6 -0.7491 -6.1894 -1.3022 16 7 -0.4642 -7.2454 -0.3212 17 6 -0.5537 -8.5448 -0.6675 18 8 -0.3157 -9.4081 0.1503 19 6 -0.9494 -8.9249 -2.0710 20 1 -0.5989 -8.2549 -2.8561 21 6 -2.3148 -9.5873 -2.2652 22 6 -1.0352 -10.4164 -2.4014 23 1 -0.8059 -11.1226 -1.6035 24 7 -0.6405 -10.8346 -3.7488 25 8 0.2761 -11.6227 -3.8978 26 8 -1.2289 -10.3941 -4.7201 27 6 -0.0794 -6.8608 1.0438 28 6 1.1175 -5.9057 0.9666 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5281 -2.4842 -1.0177 31 1 -0.6005 -1.7601 0.6178 32 1 -1.3564 -4.3385 0.2659 33 1 -0.3664 -3.9008 1.6984 34 1 2.5639 -3.8508 0.8803 35 1 2.5218 -3.8697 -0.9054 36 1 0.2095 -4.3876 -2.0005 37 1 1.3126 -5.7664 -1.7749 38 1 -0.9127 -6.6360 -2.2829 39 1 -1.6392 -5.6385 -0.9982 40 1 -2.9270 -9.7478 -1.3778 41 1 -2.8626 -9.3531 -3.1780 42 1 0.1982 -7.7500 1.6097 43 1 -0.9148 -6.3612 1.5346 44 1 1.9849 -6.4406 0.5797 45 1 1.3411 -5.5219 1.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035187189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:21 Heat of formation + Delta-G solvation = 45.676384 kcal Electronic energy + Delta-G solvation = -28105.009521 eV Core-core repulsion = 24128.762604 eV Total energy + Delta-G solvation = -3976.246917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.26196 -40.76497 -38.99324 -38.19275 -36.67743 -35.55719 -34.41313 -32.73426 -32.39813 -31.62736 -29.93598 -27.83336 -26.04444 -24.88271 -24.78134 -23.83219 -23.23581 -21.21941 -20.90211 -20.21346 -19.12870 -19.09542 -18.24247 -17.52467 -17.04454 -16.76119 -16.46382 -16.27282 -16.01456 -15.78295 -15.36244 -15.27912 -15.02950 -14.71258 -14.55421 -14.32609 -14.19396 -14.01853 -13.88516 -13.81114 -13.36155 -13.10954 -12.94695 -12.80823 -12.46456 -12.30572 -12.24061 -12.08157 -11.83566 -11.57410 -11.49775 -11.19080 -11.08349 -10.56733 -10.49898 -10.31323 -9.52429 -9.14131 -8.65229 -8.45027 -4.12699 -1.57152 0.47704 0.80718 1.14618 1.64847 1.70397 1.92065 2.10408 2.15087 2.57982 2.98286 3.03946 3.41403 3.54469 3.55471 3.74523 3.81393 3.96625 3.99333 4.08685 4.13543 4.22716 4.30553 4.34352 4.38481 4.43996 4.47373 4.51116 4.65380 4.71165 4.78202 4.82077 4.85598 4.87492 4.96222 5.01845 5.03250 5.09068 5.09501 5.17069 5.19166 5.32829 5.57634 5.70970 5.85412 6.00907 6.46885 7.44766 10.30667 11.56714 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.002622 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.081184 B =10674.882472 C =11056.925788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.075 4.075 3 Si 1.038 2.962 4 H -0.234 1.234 5 H -0.268 1.268 6 H -0.224 1.224 7 C 0.353 3.647 8 H 0.276 0.724 9 N -0.400 5.400 10 C 0.057 3.943 11 C -0.138 4.138 12 C -0.067 4.067 13 C 0.064 3.936 14 C -0.120 4.120 15 C 0.096 3.904 16 N -0.609 5.609 17 C 0.562 3.438 18 O -0.601 6.601 19 C -0.283 4.283 20 H 0.066 0.934 21 C -0.185 4.185 22 C 0.084 3.916 23 H 0.048 0.952 24 N -0.233 5.233 25 O -0.814 6.814 26 O -0.791 6.791 27 C 0.099 3.901 28 C -0.110 4.110 29 H 0.374 0.626 30 H 0.125 0.875 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.761 75.154 33.651 83.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.310 4.310 3 Si 0.851 3.149 4 H -0.157 1.157 5 H -0.192 1.192 6 H -0.147 1.147 7 C 0.173 3.827 8 H 0.292 0.708 9 N -0.066 5.066 10 C -0.063 4.063 11 C -0.175 4.175 12 C -0.068 4.068 13 C -0.056 4.056 14 C -0.158 4.158 15 C -0.026 4.026 16 N -0.343 5.343 17 C 0.354 3.646 18 O -0.484 6.484 19 C -0.316 4.316 20 H 0.084 0.916 21 C -0.229 4.229 22 C -0.044 4.044 23 H 0.066 0.934 24 N 0.016 4.984 25 O -0.873 6.873 26 O -0.851 6.851 27 C -0.022 4.022 28 C -0.148 4.148 29 H 0.194 0.806 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.583 74.158 33.607 82.713 hybrid contribution -0.744 -0.765 -1.070 1.512 sum 13.839 73.392 32.536 81.465 Atomic orbital electron populations 1.69952 1.09380 1.40987 0.97350 1.28593 0.97699 1.06730 0.98017 0.84086 0.78525 0.68775 0.83501 1.15692 1.19242 1.14653 1.26496 1.02688 0.80520 0.73005 0.70814 1.50025 1.12646 1.08390 1.35530 1.24208 0.75825 0.99955 1.06301 1.23243 0.98941 0.92264 1.03088 1.21048 0.96237 0.94852 0.94628 1.23581 0.96213 0.76018 1.09745 1.21907 0.97343 0.99126 0.97427 1.21954 0.99718 0.88650 0.92269 1.48197 1.69272 1.03744 1.13123 1.19634 0.75386 0.83025 0.86528 1.90460 1.53428 1.51090 1.53381 1.22342 1.07774 1.08114 0.93401 0.91601 1.21763 0.88120 1.13439 0.99567 1.21102 1.03246 0.92829 0.87187 0.93449 1.38160 1.26231 1.37277 0.96714 1.93102 1.43559 1.57033 1.93597 1.93059 1.72821 1.82864 1.36388 1.21844 0.98983 0.99229 0.82119 1.21823 0.96602 0.94783 1.01619 0.80573 0.85737 0.82661 0.88833 0.86840 0.81967 0.84216 0.87242 0.92936 0.93627 0.88246 0.88312 0.92629 0.92571 0.88725 0.92638 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 11.43 10.09 21.65 0.22 11.64 16 2 C -0.08 1.94 5.49 84.86 0.47 2.41 16 3 Si 1.04 -23.64 29.55 68.60 2.03 -21.61 16 4 H -0.23 4.68 7.11 99.48 0.71 5.39 16 5 H -0.27 4.40 7.11 99.48 0.71 5.11 16 6 H -0.22 4.89 7.11 99.48 0.71 5.60 16 7 C 0.35 -10.52 10.28 84.03 0.86 -9.65 16 8 H 0.28 -11.40 7.83 -2.91 -0.02 -11.42 16 9 N -0.40 8.88 3.40 -692.37 -2.36 6.52 16 10 C 0.06 -0.91 5.57 86.87 0.48 -0.43 16 11 C -0.14 1.11 4.92 31.81 0.16 1.27 16 12 C -0.07 0.16 0.55 -51.91 -0.03 0.13 16 13 C 0.06 -1.06 6.42 86.48 0.56 -0.50 16 14 C -0.12 -1.25 4.74 30.46 0.14 -1.10 16 15 C 0.10 2.54 6.01 86.40 0.52 3.06 16 16 N -0.61 -22.03 2.96 -818.41 -2.42 -24.46 16 17 C 0.56 32.74 7.48 87.66 0.66 33.40 16 18 O -0.60 -39.10 15.66 -3.00 -0.05 -39.15 16 19 C -0.28 -21.04 5.00 -11.54 -0.06 -21.10 16 20 H 0.07 5.08 6.57 -2.39 -0.02 5.07 16 21 C -0.18 -14.38 9.72 30.62 0.30 -14.08 16 22 C 0.08 7.97 6.43 45.02 0.29 8.26 16 23 H 0.05 4.58 7.67 -2.39 -0.02 4.56 16 24 N -0.23 -27.17 4.33 -169.28 -0.73 -27.91 16 25 O -0.81 -101.35 19.24 18.89 0.36 -100.99 16 26 O -0.79 -95.10 18.28 18.88 0.35 -94.76 16 27 C 0.10 2.17 6.14 86.40 0.53 2.70 16 28 C -0.11 -0.69 4.72 30.46 0.14 -0.55 16 29 H 0.37 -7.97 8.31 -92.71 -0.77 -8.74 16 30 H 0.13 -1.79 7.75 -2.39 -0.02 -1.81 16 31 H 0.16 -2.84 5.89 -2.39 -0.01 -2.86 16 32 H 0.09 -0.22 6.08 -2.39 -0.01 -0.23 16 33 H 0.11 -1.28 8.01 -2.39 -0.02 -1.30 16 34 H 0.16 -3.65 7.78 -2.39 -0.02 -3.67 16 35 H 0.14 -2.40 7.83 -2.38 -0.02 -2.42 16 36 H 0.11 0.28 7.47 -2.39 -0.02 0.26 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.82 5.50 -2.39 -0.01 1.80 16 39 H 0.10 1.79 6.48 -2.39 -0.02 1.78 16 40 H 0.10 6.63 8.14 -2.39 -0.02 6.61 16 41 H 0.06 4.57 7.63 -2.39 -0.02 4.55 16 42 H 0.06 1.71 6.99 -2.39 -0.02 1.70 16 43 H 0.09 1.36 7.56 -2.38 -0.02 1.34 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 45 H 0.13 -0.46 8.11 -2.39 -0.02 -0.48 16 Total: -1.00 -277.91 356.20 3.43 -274.48 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.01 Total: 12.41 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.02 Total: 3.81 kcal Atomic # 7 Polarization: -28.90 SS G_CDS: -5.29 Total: -34.20 kcal Atomic # 8 Polarization: -235.55 SS G_CDS: 0.66 Total: -234.89 kcal Atomic # 14 Polarization: -23.64 SS G_CDS: 2.03 Total: -21.61 kcal Total: -277.91 3.43 -274.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035187189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 320.160 kcal (2) G-P(sol) polarization free energy of solvation -277.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -274.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds