Wall clock time and date at job start Tue Mar 31 2020 14:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35275 * 126.71021 * 2 1 4 4 C 1.41931 * 103.95957 * 180.11015 * 3 2 1 5 5 O 1.35713 * 126.87364 * 179.91023 * 4 3 2 6 6 C 1.42903 * 116.99413 * 179.70852 * 5 4 3 7 7 C 1.50701 * 109.46878 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.63110 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.77715 * 233.58100 * 10 9 7 12 12 C 1.53040 * 109.31233 * 305.37008 * 11 10 9 13 13 H 1.09004 * 109.45891 * 181.38330 * 12 11 10 14 14 N 1.46504 * 109.45586 * 301.35458 * 12 11 10 15 15 C 1.36932 * 120.00191 * 274.99855 * 14 12 11 16 16 H 1.08004 * 119.99747 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00325 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00033 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46922 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47076 * 120.00133 * 19 17 15 22 22 H 1.48497 * 109.47121 * 240.00145 * 19 17 15 23 23 C 1.53040 * 109.54077 * 61.36216 * 12 11 10 24 24 H 1.08993 * 109.49843 * 58.61494 * 23 12 11 25 25 C 1.53001 * 109.49889 * 178.68736 * 23 12 11 26 26 C 1.46928 * 120.62698 * 179.72199 * 9 7 6 27 27 N 1.30612 * 106.24157 * 359.64347 * 4 3 2 28 28 O 1.20910 * 111.50007 * 0.23255 * 27 4 3 29 29 H 1.08991 * 109.46857 * 180.30996 * 1 2 3 30 30 H 1.08998 * 109.47174 * 300.31505 * 1 2 3 31 31 H 1.09000 * 109.46847 * 60.31288 * 1 2 3 32 32 H 1.08004 * 128.01954 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47382 * 59.99870 * 6 5 4 34 34 H 1.09001 * 109.46938 * 299.99856 * 6 5 4 35 35 H 1.09002 * 109.58578 * 353.37442 * 10 9 7 36 36 H 1.09004 * 109.58605 * 113.79667 * 10 9 7 37 37 H 1.09001 * 109.49283 * 65.31632 * 11 10 9 38 38 H 1.09000 * 109.49905 * 185.41523 * 11 10 9 39 39 H 0.97003 * 119.99781 * 95.01153 * 14 12 11 40 40 H 0.96998 * 120.00470 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46960 * 59.99452 * 25 23 12 42 42 H 1.08994 * 109.47062 * 180.02562 * 25 23 12 43 43 H 1.09001 * 109.46388 * 299.99500 * 25 23 12 44 44 H 1.09005 * 109.58457 * 246.20343 * 26 9 7 45 45 H 1.09001 * 109.58558 * 6.62966 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0845 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7954 1.2218 -0.0054 6 6 5.9989 0.4513 -0.0012 7 6 7.1880 1.3771 -0.0057 8 8 7.0212 2.5783 -0.0114 9 7 8.4368 0.8700 -0.0024 10 6 8.6547 -0.5829 0.0050 11 6 9.5787 -0.9370 1.1745 12 6 10.8621 -0.1094 1.0741 13 1 11.5317 -0.3772 1.8914 14 7 11.5202 -0.3829 -0.2058 15 6 12.3597 -1.4578 -0.3282 16 1 12.5362 -2.1042 0.5188 17 6 12.9837 -1.7167 -1.5407 18 7 12.7690 -0.9286 -2.5728 19 14 14.1283 -3.1835 -1.7078 20 1 14.2005 -3.9050 -0.4120 21 1 13.6103 -4.0986 -2.7564 22 1 15.4843 -2.7125 -2.0878 23 6 10.5192 1.3795 1.1630 24 1 10.0077 1.5795 2.1044 25 6 11.8059 2.2047 1.0955 26 6 9.6060 1.7597 -0.0128 27 7 3.4765 -0.7621 0.0039 28 8 2.3086 -1.0749 0.0054 29 1 -0.3633 -1.0276 0.0056 30 1 -0.3633 0.5187 0.8871 31 1 -0.3633 0.5090 -0.8928 32 1 2.0312 2.1264 -0.0004 33 1 6.0282 -0.1815 -0.8882 34 1 6.0274 -0.1731 0.8917 35 1 7.7000 -1.0950 0.1255 36 1 9.1193 -0.8875 -0.9328 37 1 9.0755 -0.7153 2.1157 38 1 9.8258 -1.9979 1.1346 39 1 11.3615 0.1976 -0.9666 40 1 13.2053 -1.1092 -3.4201 41 1 12.3164 2.0052 0.1533 42 1 11.5612 3.2649 1.1592 43 1 12.4565 1.9317 1.9263 44 1 10.1464 1.6419 -0.9521 45 1 9.2791 2.7939 0.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036063957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:16 Heat of formation + Delta-G solvation = 8.858075 kcal Electronic energy + Delta-G solvation = -27639.623110 eV Core-core repulsion = 23661.779631 eV Total energy + Delta-G solvation = -3977.843479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.11973 -40.31757 -38.89764 -37.51017 -34.38318 -34.11894 -32.97408 -32.69846 -31.46152 -29.32769 -29.09460 -28.10017 -25.97893 -24.78203 -23.64227 -23.52141 -21.77627 -21.59241 -19.73403 -18.42987 -18.09123 -18.03335 -17.40069 -17.06506 -16.58539 -16.27253 -15.76435 -14.89651 -14.57428 -14.40718 -14.22629 -14.13834 -13.99482 -13.72168 -13.66959 -13.33539 -13.19540 -12.87734 -12.76803 -12.55100 -12.25823 -11.88702 -11.60138 -11.43681 -11.31088 -11.23535 -10.95245 -10.84231 -10.54382 -10.53538 -10.18926 -9.88842 -9.78213 -9.67158 -9.59475 -9.40642 -8.97921 -8.34194 -7.02204 -5.82880 -3.11665 1.15545 2.05004 2.20937 2.61795 2.83955 3.36322 3.38959 3.45301 3.47226 3.96225 4.40491 4.50834 4.54148 4.67484 4.87686 4.90285 4.94709 4.96453 5.11556 5.22713 5.24962 5.31720 5.36570 5.45349 5.53320 5.61510 5.66572 5.75239 5.86364 6.00983 6.02654 6.18024 6.26647 6.34024 6.45497 6.52642 6.63160 6.69754 6.79098 6.87608 6.95319 7.53497 7.65754 8.01509 8.20868 8.35478 9.47305 10.03301 10.38382 11.39522 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.002687 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.602494 B =10416.903970 C =11385.712656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.234 4.234 4 C 0.214 3.786 5 O -0.257 6.257 6 C 0.048 3.952 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.595 5.595 10 C 0.109 3.891 11 C -0.150 4.150 12 C 0.178 3.822 13 H 0.053 0.947 14 N -0.719 5.719 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.108 4.108 24 H 0.066 0.934 25 C -0.137 4.137 26 C 0.121 3.879 27 N -0.410 5.410 28 O 0.099 5.901 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.696 2.767 6.942 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.162 6.162 6 C -0.031 4.031 7 C 0.303 3.697 8 O -0.409 6.409 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.191 4.191 12 C 0.067 3.933 13 H 0.071 0.929 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.128 4.128 24 H 0.085 0.915 25 C -0.195 4.195 26 C -0.001 4.001 27 N -0.138 5.138 28 O 0.039 5.961 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.196 0.804 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.734 2.543 6.954 22.017 hybrid contribution 0.514 -0.230 -0.450 0.721 sum -20.220 2.314 6.503 21.366 Atomic orbital electron populations 1.20377 0.83529 1.04923 1.04365 1.24351 0.96482 0.85647 1.01022 1.21785 0.88315 1.01715 1.13718 1.22076 0.88525 0.88003 0.99777 1.86275 1.10056 1.30931 1.88952 1.22567 0.82169 0.93689 1.04659 1.19773 0.83721 0.88626 0.77576 1.90711 1.85275 1.15098 1.49805 1.48029 1.04680 1.08339 1.71828 1.21841 0.99345 0.78196 1.01930 1.22535 0.98309 1.02299 0.95963 1.20225 0.91647 0.90461 0.90932 0.92933 1.42493 1.53097 1.32643 1.07897 1.19259 1.18460 1.03244 0.95926 0.91160 1.24712 1.00883 0.99102 0.96088 1.69653 1.47372 1.39282 1.01711 0.86163 0.80620 0.82277 0.77377 1.20625 1.21966 1.21958 1.21799 0.96080 0.97368 0.97571 0.91517 1.21667 0.96576 0.97822 1.03462 1.21814 0.84728 0.93983 0.99581 1.74184 0.97833 1.14252 1.27523 1.84803 1.10317 1.31981 1.69031 0.89609 0.88902 0.88889 0.80415 0.88553 0.88641 0.91415 0.89149 0.93211 0.90473 0.78097 0.93538 0.90978 0.93705 0.92731 0.90263 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 36.01 0.38 0.13 16 2 C -0.01 -0.09 7.48 -35.36 -0.26 -0.36 16 3 C -0.23 -2.33 11.11 -39.22 -0.44 -2.77 16 4 C 0.21 2.87 8.01 -16.66 -0.13 2.74 16 5 O -0.26 -3.96 9.74 -38.76 -0.38 -4.34 16 6 C 0.05 0.68 4.49 36.01 0.16 0.84 16 7 C 0.52 8.69 7.78 -10.98 -0.09 8.60 16 8 O -0.53 -10.63 15.91 -14.35 -0.23 -10.86 16 9 N -0.60 -9.71 2.97 -172.47 -0.51 -10.22 16 10 C 0.11 1.71 6.08 -3.71 -0.02 1.68 16 11 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 12 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 13 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -16.24 3.64 -53.38 -0.19 -16.43 16 15 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 19 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.11 -1.76 2.69 -90.25 -0.24 -2.00 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.14 -2.19 9.05 37.16 0.34 -1.85 16 26 C 0.12 2.04 5.45 -3.46 -0.02 2.02 16 27 N -0.41 -5.46 11.54 30.38 0.35 -5.11 16 28 O 0.10 1.09 11.19 17.07 0.19 1.28 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.10 1.27 7.94 -51.93 -0.41 0.86 16 34 H 0.10 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 36 H 0.09 1.66 7.74 -51.93 -0.40 1.25 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.38 9.32 5.91 -40.82 -0.24 9.07 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.47 6.63 -51.93 -0.34 1.13 16 45 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.13 369.02 -7.04 -39.17 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.63 Total: 7.59 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.90 Total: 2.87 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.37 Total: -57.92 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.41 Total: -13.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.13 -7.04 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036063957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.029 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds