Wall clock time and date at job start Tue Mar 31 2020 14:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35275 * 126.71021 * 2 1 4 4 C 1.41931 * 103.95957 * 180.11015 * 3 2 1 5 5 O 1.35713 * 126.87364 * 179.91023 * 4 3 2 6 6 C 1.42903 * 116.99413 * 179.70852 * 5 4 3 7 7 C 1.50701 * 109.46878 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.63110 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.77715 * 233.58100 * 10 9 7 12 12 C 1.53040 * 109.31233 * 305.37008 * 11 10 9 13 13 H 1.09004 * 109.45891 * 181.38330 * 12 11 10 14 14 N 1.46504 * 109.45586 * 301.35458 * 12 11 10 15 15 C 1.36932 * 120.00191 * 274.99855 * 14 12 11 16 16 H 1.08004 * 119.99747 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00325 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00033 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46922 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47076 * 120.00133 * 19 17 15 22 22 H 1.48497 * 109.47121 * 240.00145 * 19 17 15 23 23 C 1.53040 * 109.54077 * 61.36216 * 12 11 10 24 24 H 1.08993 * 109.49843 * 58.61494 * 23 12 11 25 25 C 1.53001 * 109.49889 * 178.68736 * 23 12 11 26 26 C 1.46928 * 120.62698 * 179.72199 * 9 7 6 27 27 N 1.30612 * 106.24157 * 359.64347 * 4 3 2 28 28 O 1.20910 * 111.50007 * 0.23255 * 27 4 3 29 29 H 1.08991 * 109.46857 * 180.30996 * 1 2 3 30 30 H 1.08998 * 109.47174 * 300.31505 * 1 2 3 31 31 H 1.09000 * 109.46847 * 60.31288 * 1 2 3 32 32 H 1.08004 * 128.01954 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47382 * 59.99870 * 6 5 4 34 34 H 1.09001 * 109.46938 * 299.99856 * 6 5 4 35 35 H 1.09002 * 109.58578 * 353.37442 * 10 9 7 36 36 H 1.09004 * 109.58605 * 113.79667 * 10 9 7 37 37 H 1.09001 * 109.49283 * 65.31632 * 11 10 9 38 38 H 1.09000 * 109.49905 * 185.41523 * 11 10 9 39 39 H 0.97003 * 119.99781 * 95.01153 * 14 12 11 40 40 H 0.96998 * 120.00470 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46960 * 59.99452 * 25 23 12 42 42 H 1.08994 * 109.47062 * 180.02562 * 25 23 12 43 43 H 1.09001 * 109.46388 * 299.99500 * 25 23 12 44 44 H 1.09005 * 109.58457 * 246.20343 * 26 9 7 45 45 H 1.09001 * 109.58558 * 6.62966 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0845 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7954 1.2218 -0.0054 6 6 5.9989 0.4513 -0.0012 7 6 7.1880 1.3771 -0.0057 8 8 7.0212 2.5783 -0.0114 9 7 8.4368 0.8700 -0.0024 10 6 8.6547 -0.5829 0.0050 11 6 9.5787 -0.9370 1.1745 12 6 10.8621 -0.1094 1.0741 13 1 11.5317 -0.3772 1.8914 14 7 11.5202 -0.3829 -0.2058 15 6 12.3597 -1.4578 -0.3282 16 1 12.5362 -2.1042 0.5188 17 6 12.9837 -1.7167 -1.5407 18 7 12.7690 -0.9286 -2.5728 19 14 14.1283 -3.1835 -1.7078 20 1 14.2005 -3.9050 -0.4120 21 1 13.6103 -4.0986 -2.7564 22 1 15.4843 -2.7125 -2.0878 23 6 10.5192 1.3795 1.1630 24 1 10.0077 1.5795 2.1044 25 6 11.8059 2.2047 1.0955 26 6 9.6060 1.7597 -0.0128 27 7 3.4765 -0.7621 0.0039 28 8 2.3086 -1.0749 0.0054 29 1 -0.3633 -1.0276 0.0056 30 1 -0.3633 0.5187 0.8871 31 1 -0.3633 0.5090 -0.8928 32 1 2.0312 2.1264 -0.0004 33 1 6.0282 -0.1815 -0.8882 34 1 6.0274 -0.1731 0.8917 35 1 7.7000 -1.0950 0.1255 36 1 9.1193 -0.8875 -0.9328 37 1 9.0755 -0.7153 2.1157 38 1 9.8258 -1.9979 1.1346 39 1 11.3615 0.1976 -0.9666 40 1 13.2053 -1.1092 -3.4201 41 1 12.3164 2.0052 0.1533 42 1 11.5612 3.2649 1.1592 43 1 12.4565 1.9317 1.9263 44 1 10.1464 1.6419 -0.9521 45 1 9.2791 2.7939 0.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036063957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:16 Heat of formation + Delta-G solvation = -12.049480 kcal Electronic energy + Delta-G solvation = -27640.529729 eV Core-core repulsion = 23661.779631 eV Total energy + Delta-G solvation = -3978.750098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.96560 -41.63812 -40.06783 -38.90480 -35.97801 -34.80620 -34.55206 -33.57901 -33.02839 -30.99388 -30.32144 -28.65445 -27.35520 -26.27873 -25.30523 -24.49553 -23.12646 -22.56437 -21.01997 -19.78964 -19.27365 -19.04803 -18.95026 -18.07428 -17.78832 -17.42619 -17.01733 -16.57986 -16.01570 -15.83096 -15.56631 -15.40864 -14.91296 -14.89390 -14.56881 -14.40133 -14.29495 -14.01130 -13.90748 -13.64647 -13.23081 -13.06567 -12.99469 -12.92470 -12.87175 -12.71027 -12.45665 -12.13388 -12.06747 -12.01701 -11.95355 -11.61090 -11.20021 -11.07187 -10.85352 -10.51845 -10.29305 -9.75233 -8.93907 -7.89691 -5.15912 0.44065 1.12849 1.17518 1.29646 1.48199 1.49922 1.58165 2.07451 2.31275 2.58991 3.07776 3.20192 3.44490 3.74272 3.78517 3.83096 3.88155 3.90325 3.98175 3.99110 4.05397 4.25158 4.34266 4.38130 4.47515 4.59549 4.66633 4.77595 4.80549 4.81024 4.90457 4.91509 4.99358 5.11785 5.15408 5.23692 5.26313 5.28168 5.44905 5.56075 5.60698 5.79698 6.21314 6.32341 6.86695 7.21538 7.39994 8.15741 8.39120 9.33766 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.002687 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.602494 B =10416.903970 C =11385.712656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 C -0.250 4.250 4 C 0.187 3.813 5 O -0.279 6.279 6 C 0.055 3.945 7 C 0.518 3.482 8 O -0.567 6.567 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.142 4.142 12 C 0.171 3.829 13 H 0.051 0.949 14 N -0.725 5.725 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.963 3.037 20 H -0.266 1.266 21 H -0.299 1.299 22 H -0.301 1.301 23 C -0.098 4.098 24 H 0.088 0.912 25 C -0.132 4.132 26 C 0.124 3.876 27 N -0.433 5.433 28 O 0.093 5.907 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.026 2.114 8.738 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.271 4.271 4 C -0.010 4.010 5 O -0.185 6.185 6 C -0.023 4.023 7 C 0.305 3.695 8 O -0.447 6.447 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.183 4.183 12 C 0.062 3.938 13 H 0.069 0.931 14 N -0.366 5.366 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.266 4.266 18 N -0.621 5.621 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.227 1.227 22 H -0.229 1.229 23 C -0.117 4.117 24 H 0.106 0.894 25 C -0.190 4.190 26 C 0.002 3.998 27 N -0.161 5.161 28 O 0.033 5.967 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.214 0.786 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.207 0.793 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.085 1.860 8.807 24.778 hybrid contribution 1.103 0.007 -0.943 1.451 sum -21.983 1.866 7.865 23.422 Atomic orbital electron populations 1.20685 0.79760 1.06444 1.06178 1.25184 0.98118 0.84072 0.98016 1.22157 0.87108 1.03236 1.14617 1.22498 0.88727 0.88646 1.01118 1.86221 1.10811 1.31918 1.89521 1.22498 0.81112 0.92862 1.05875 1.20206 0.84280 0.88504 0.76480 1.90689 1.85776 1.16745 1.51441 1.48044 1.04551 1.08501 1.71408 1.21802 1.00695 0.77919 1.00372 1.22413 0.97156 1.01360 0.97359 1.20464 0.92356 0.92258 0.88709 0.93052 1.42608 1.53089 1.31708 1.09196 1.19605 1.17187 1.03194 0.95575 0.90534 1.25386 1.03229 1.01745 0.96282 1.69803 1.49114 1.41223 1.01950 0.85219 0.78327 0.79611 0.77486 1.19052 1.22697 1.22860 1.21723 0.96125 0.95888 0.98009 0.89397 1.21603 0.96254 0.99142 1.01977 1.21688 0.84996 0.94230 0.98893 1.74160 0.99118 1.14385 1.28398 1.84754 1.10049 1.33002 1.68916 0.88273 0.86831 0.86979 0.78577 0.87720 0.86783 0.88250 0.92135 0.90389 0.91002 0.79309 0.94415 0.94075 0.91694 0.92012 0.92586 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C 0.01 0.14 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.60 11.11 22.50 0.25 -4.35 16 4 C 0.19 4.89 8.01 85.79 0.69 5.58 16 5 O -0.28 -8.48 9.74 -71.31 -0.69 -9.18 16 6 C 0.05 1.50 4.49 71.24 0.32 1.82 16 7 C 0.52 17.11 7.78 87.66 0.68 17.79 16 8 O -0.57 -22.70 15.91 16.01 0.25 -22.44 16 9 N -0.59 -18.97 2.97 -817.97 -2.43 -21.40 16 10 C 0.11 3.45 6.08 86.36 0.53 3.97 16 11 C -0.14 -4.31 5.78 30.67 0.18 -4.13 16 12 C 0.17 6.06 2.53 45.02 0.11 6.17 16 13 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 14 N -0.72 -33.01 3.64 -322.81 -1.17 -34.18 16 15 C -0.22 -11.50 9.93 84.03 0.83 -10.66 16 16 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 19 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 C -0.10 -3.06 2.69 -10.56 -0.03 -3.08 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 C -0.13 -4.11 9.05 71.98 0.65 -3.46 16 26 C 0.12 4.21 5.45 86.52 0.47 4.68 16 27 N -0.43 -11.12 11.54 -172.61 -1.99 -13.11 16 28 O 0.09 1.91 11.19 71.24 0.80 2.71 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.10 2.68 7.94 -2.39 -0.02 2.66 16 34 H 0.11 2.67 7.69 -2.39 -0.02 2.65 16 35 H 0.10 2.38 5.93 -2.39 -0.01 2.36 16 36 H 0.06 2.23 7.74 -2.38 -0.02 2.22 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.37 18.70 5.91 -92.71 -0.55 18.15 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 2.17 6.63 -2.38 -0.02 2.15 16 45 H 0.08 2.91 7.00 -2.39 -0.02 2.89 16 Total: -1.00 -71.25 369.02 3.62 -67.63 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.46 Total: 28.62 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.08 Total: 11.56 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.31 Total: -125.97 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: 0.36 Total: -28.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.25 3.62 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036063957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.581 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds