Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35271 * 126.71055 * 2 1 4 4 C 1.41941 * 103.95916 * 180.11260 * 3 2 1 5 5 O 1.35705 * 126.87601 * 179.91244 * 4 3 2 6 6 C 1.42901 * 116.99511 * 179.70887 * 5 4 3 7 7 C 1.50702 * 109.46552 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00608 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99526 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63188 * 359.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 14 14 N 1.46499 * 109.45427 * 181.24460 * 12 11 10 15 15 C 1.36928 * 120.00250 * 84.79108 * 14 12 11 16 16 H 1.08000 * 120.00193 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00515 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00431 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99677 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47004 * 90.00205 * 19 17 15 21 21 H 1.48502 * 109.47141 * 210.00662 * 19 17 15 22 22 H 1.48498 * 109.47036 * 330.00299 * 19 17 15 23 23 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 24 24 H 1.09001 * 109.49731 * 58.65147 * 23 12 11 25 25 C 1.53005 * 109.49929 * 178.74923 * 23 12 11 26 26 C 1.46928 * 120.62829 * 179.97438 * 9 7 6 27 27 N 1.30617 * 106.23990 * 359.65028 * 4 3 2 28 28 O 1.20911 * 111.49898 * 0.22350 * 27 4 3 29 29 H 1.09000 * 109.47342 * 180.30549 * 1 2 3 30 30 H 1.08997 * 109.46602 * 300.30607 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.30280 * 1 2 3 32 32 H 1.07996 * 128.02095 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47096 * 60.00373 * 6 5 4 34 34 H 1.08994 * 109.47347 * 299.99829 * 6 5 4 35 35 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 36 36 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 37 37 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 38 38 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 39 39 H 0.97007 * 119.99658 * 264.78640 * 14 12 11 40 40 H 0.97002 * 119.99664 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47522 * 179.84157 * 25 23 12 42 42 H 1.09006 * 109.47027 * 299.84067 * 25 23 12 43 43 H 1.08998 * 109.46892 * 59.83549 * 25 23 12 44 44 H 1.08998 * 109.58787 * 246.20220 * 26 9 7 45 45 H 1.08999 * 109.58470 * 6.62573 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6246 0.5355 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9988 0.4511 -0.0014 7 6 7.1880 1.3769 -0.0058 8 8 7.0213 2.5781 -0.0123 9 7 8.4367 0.8697 -0.0036 10 6 8.6547 -0.5832 0.0037 11 6 9.5808 -0.9400 1.1706 12 6 10.8629 -0.1097 1.0710 13 1 11.3520 -0.3134 0.1184 14 7 11.7638 -0.4697 2.1687 15 6 12.6017 -1.5452 2.0421 16 1 12.5981 -2.1285 1.1331 17 6 13.4551 -1.8867 3.0823 18 7 14.2601 -2.9209 2.9608 19 14 13.4609 -0.8783 4.6548 20 1 12.4738 -1.4439 5.6092 21 1 14.8153 -0.9168 5.2625 22 1 13.0982 0.5275 4.3426 23 6 10.5202 1.3792 1.1601 24 1 10.0089 1.5791 2.1017 25 6 11.8068 2.2044 1.0915 26 6 9.6060 1.7594 -0.0084 27 7 3.4765 -0.7622 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3634 -1.0276 0.0055 30 1 -0.3632 0.5186 0.8872 31 1 -0.3633 0.5091 -0.8926 32 1 2.0312 2.1263 -0.0004 33 1 6.0281 -0.1816 -0.8884 34 1 6.0274 -0.1734 0.8915 35 1 7.7001 -1.0953 0.1250 36 1 9.1161 -0.8882 -0.9355 37 1 9.0797 -0.7202 2.1133 38 1 9.8276 -2.0009 1.1280 39 1 11.7669 0.0541 2.9852 40 1 14.8566 -3.1592 3.6876 41 1 11.5621 3.2648 1.1521 42 1 12.4570 1.9335 1.9234 43 1 12.3180 2.0026 0.1502 44 1 10.1475 1.6462 -0.9476 45 1 9.2791 2.7931 0.1049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036063958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = 10.652266 kcal Electronic energy + Delta-G solvation = -27295.411560 eV Core-core repulsion = 23317.645883 eV Total energy + Delta-G solvation = -3977.765677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.20406 -40.50149 -39.00767 -37.64111 -34.86689 -34.20006 -33.10422 -32.78185 -31.64025 -30.02133 -29.24270 -28.17977 -26.23059 -25.00961 -23.72889 -22.69127 -21.87691 -21.52217 -20.13826 -19.24208 -18.31361 -18.16407 -17.56772 -17.19642 -16.82086 -16.41510 -15.97175 -15.06158 -14.72831 -14.59873 -14.39421 -14.25196 -13.91668 -13.81983 -13.73078 -13.45887 -13.23917 -13.01509 -12.85917 -12.54662 -12.46858 -12.02633 -11.99146 -11.81418 -11.50359 -11.40997 -11.09952 -10.95939 -10.75908 -10.59019 -10.27705 -9.90887 -9.86476 -9.83635 -9.62859 -9.50865 -8.98285 -8.68508 -7.32853 -5.82239 -3.18028 1.07450 1.95594 2.04937 2.39990 2.74918 3.14636 3.33375 3.36725 3.42166 3.86294 4.19692 4.41983 4.54278 4.58703 4.73733 4.75998 4.82609 4.90241 4.90840 4.98612 5.07728 5.15469 5.16932 5.29199 5.36908 5.44907 5.54390 5.54808 5.61006 5.77176 5.89383 5.95577 6.03741 6.19775 6.22566 6.30409 6.41637 6.62378 6.65749 6.71684 6.87123 7.24952 7.91468 7.92826 7.98599 8.36749 9.14668 9.87492 10.07216 11.35881 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002486 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.758886 B =11258.619000 C =12017.151147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.234 4.234 4 C 0.213 3.787 5 O -0.257 6.257 6 C 0.047 3.953 7 C 0.519 3.481 8 O -0.526 6.526 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.153 4.153 12 C 0.188 3.812 13 H 0.058 0.942 14 N -0.745 5.745 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.114 4.114 24 H 0.069 0.931 25 C -0.137 4.137 26 C 0.123 3.877 27 N -0.410 5.410 28 O 0.099 5.901 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.667 7.405 -8.053 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.162 6.162 6 C -0.032 4.032 7 C 0.305 3.695 8 O -0.403 6.403 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.194 4.194 12 C 0.078 3.922 13 H 0.076 0.924 14 N -0.386 5.386 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.580 5.580 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.134 4.134 24 H 0.088 0.912 25 C -0.195 4.195 26 C 0.001 3.999 27 N -0.138 5.138 28 O 0.039 5.961 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.196 0.804 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.673 7.126 -8.135 26.939 hybrid contribution 0.009 1.028 1.297 1.655 sum -24.664 8.154 -6.838 26.861 Atomic orbital electron populations 1.20388 0.83472 1.04992 1.04411 1.24361 0.96508 0.85588 1.00846 1.21787 0.88276 1.01744 1.13737 1.22061 0.88431 0.88040 0.99926 1.86269 1.10036 1.30880 1.89052 1.22556 0.82207 0.93639 1.04779 1.19816 0.83682 0.88683 0.77270 1.90727 1.85217 1.15107 1.49210 1.48064 1.04880 1.08110 1.72528 1.21969 1.00646 0.78670 1.00761 1.22673 0.97401 1.02767 0.96529 1.20175 0.89234 0.89822 0.92941 0.92391 1.42766 1.45308 1.35047 1.15521 1.19039 1.12776 1.03504 1.01992 0.89171 1.24665 0.98594 0.97804 0.97964 1.69697 1.26970 1.28355 1.32982 0.86588 0.77083 0.80183 0.84855 1.21169 1.21749 1.20318 1.21792 0.96117 0.97386 0.98124 0.91249 1.21671 0.96714 0.97953 1.03177 1.21734 0.84737 0.94654 0.98809 1.74180 0.97925 1.14191 1.27466 1.84806 1.10290 1.31985 1.69003 0.89555 0.88844 0.88856 0.80390 0.88545 0.88408 0.90548 0.90630 0.92191 0.89728 0.80595 0.93035 0.93494 0.91310 0.92478 0.90980 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.36 -0.26 -0.33 16 3 C -0.23 -2.12 11.11 -39.22 -0.44 -2.55 16 4 C 0.21 2.62 8.01 -16.65 -0.13 2.49 16 5 O -0.26 -3.59 9.74 -38.73 -0.38 -3.97 16 6 C 0.05 0.57 4.49 36.01 0.16 0.74 16 7 C 0.52 7.54 7.78 -10.98 -0.09 7.46 16 8 O -0.53 -9.45 15.91 -14.35 -0.23 -9.68 16 9 N -0.60 -8.06 2.97 -172.79 -0.51 -8.57 16 10 C 0.10 1.24 6.34 -3.71 -0.02 1.22 16 11 C -0.15 -2.37 5.67 -26.59 -0.15 -2.52 16 12 C 0.19 3.32 2.19 -67.87 -0.15 3.17 16 13 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 14 N -0.74 -16.54 4.22 -53.37 -0.22 -16.77 16 15 C -0.24 -6.52 10.41 -15.06 -0.16 -6.67 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 19 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 23 C -0.11 -1.74 2.46 -90.52 -0.22 -1.96 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 25 C -0.14 -2.05 9.02 37.16 0.34 -1.71 16 26 C 0.12 1.67 5.71 -3.73 -0.02 1.65 16 27 N -0.41 -5.01 11.54 30.38 0.35 -4.66 16 28 O 0.10 1.01 11.19 17.06 0.19 1.20 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.10 1.02 7.94 -51.93 -0.41 0.60 16 34 H 0.10 1.11 7.69 -51.93 -0.40 0.71 16 35 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.36 8.08 5.37 -40.82 -0.22 7.86 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.18 7.36 -51.93 -0.38 0.80 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -34.22 369.83 -6.78 -41.00 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.75 Total: 5.51 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.87 Total: 1.20 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.39 Total: -57.86 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.41 Total: -12.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.22 -6.78 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036063958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.657 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds