Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35271 * 126.71055 * 2 1 4 4 C 1.41941 * 103.95916 * 180.11260 * 3 2 1 5 5 O 1.35705 * 126.87601 * 179.91244 * 4 3 2 6 6 C 1.42901 * 116.99511 * 179.70887 * 5 4 3 7 7 C 1.50702 * 109.46552 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00608 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99526 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63188 * 359.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 14 14 N 1.46499 * 109.45427 * 181.24460 * 12 11 10 15 15 C 1.36928 * 120.00250 * 84.79108 * 14 12 11 16 16 H 1.08000 * 120.00193 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00515 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00431 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99677 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47004 * 90.00205 * 19 17 15 21 21 H 1.48502 * 109.47141 * 210.00662 * 19 17 15 22 22 H 1.48498 * 109.47036 * 330.00299 * 19 17 15 23 23 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 24 24 H 1.09001 * 109.49731 * 58.65147 * 23 12 11 25 25 C 1.53005 * 109.49929 * 178.74923 * 23 12 11 26 26 C 1.46928 * 120.62829 * 179.97438 * 9 7 6 27 27 N 1.30617 * 106.23990 * 359.65028 * 4 3 2 28 28 O 1.20911 * 111.49898 * 0.22350 * 27 4 3 29 29 H 1.09000 * 109.47342 * 180.30549 * 1 2 3 30 30 H 1.08997 * 109.46602 * 300.30607 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.30280 * 1 2 3 32 32 H 1.07996 * 128.02095 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47096 * 60.00373 * 6 5 4 34 34 H 1.08994 * 109.47347 * 299.99829 * 6 5 4 35 35 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 36 36 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 37 37 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 38 38 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 39 39 H 0.97007 * 119.99658 * 264.78640 * 14 12 11 40 40 H 0.97002 * 119.99664 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47522 * 179.84157 * 25 23 12 42 42 H 1.09006 * 109.47027 * 299.84067 * 25 23 12 43 43 H 1.08998 * 109.46892 * 59.83549 * 25 23 12 44 44 H 1.08998 * 109.58787 * 246.20220 * 26 9 7 45 45 H 1.08999 * 109.58470 * 6.62573 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6246 0.5355 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9988 0.4511 -0.0014 7 6 7.1880 1.3769 -0.0058 8 8 7.0213 2.5781 -0.0123 9 7 8.4367 0.8697 -0.0036 10 6 8.6547 -0.5832 0.0037 11 6 9.5808 -0.9400 1.1706 12 6 10.8629 -0.1097 1.0710 13 1 11.3520 -0.3134 0.1184 14 7 11.7638 -0.4697 2.1687 15 6 12.6017 -1.5452 2.0421 16 1 12.5981 -2.1285 1.1331 17 6 13.4551 -1.8867 3.0823 18 7 14.2601 -2.9209 2.9608 19 14 13.4609 -0.8783 4.6548 20 1 12.4738 -1.4439 5.6092 21 1 14.8153 -0.9168 5.2625 22 1 13.0982 0.5275 4.3426 23 6 10.5202 1.3792 1.1601 24 1 10.0089 1.5791 2.1017 25 6 11.8068 2.2044 1.0915 26 6 9.6060 1.7594 -0.0084 27 7 3.4765 -0.7622 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3634 -1.0276 0.0055 30 1 -0.3632 0.5186 0.8872 31 1 -0.3633 0.5091 -0.8926 32 1 2.0312 2.1263 -0.0004 33 1 6.0281 -0.1816 -0.8884 34 1 6.0274 -0.1734 0.8915 35 1 7.7001 -1.0953 0.1250 36 1 9.1161 -0.8882 -0.9355 37 1 9.0797 -0.7202 2.1133 38 1 9.8276 -2.0009 1.1280 39 1 11.7669 0.0541 2.9852 40 1 14.8566 -3.1592 3.6876 41 1 11.5621 3.2648 1.1521 42 1 12.4570 1.9335 1.9234 43 1 12.3180 2.0026 0.1502 44 1 10.1475 1.6462 -0.9476 45 1 9.2791 2.7931 0.1049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036063958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = -12.962440 kcal Electronic energy + Delta-G solvation = -27296.435570 eV Core-core repulsion = 23317.645883 eV Total energy + Delta-G solvation = -3978.789687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.96183 -41.62853 -40.04156 -38.91303 -36.38182 -34.81428 -34.58527 -33.59182 -33.26049 -31.62343 -30.29191 -28.65969 -27.44471 -26.49687 -24.49578 -24.24210 -23.11193 -22.53987 -21.46346 -20.44830 -19.50750 -19.05737 -18.94735 -18.08590 -17.82476 -17.39969 -17.05197 -16.77928 -16.06760 -15.83033 -15.58312 -15.30369 -14.92544 -14.89319 -14.66581 -14.42632 -14.26786 -14.10118 -13.91131 -13.71162 -13.49671 -13.23311 -13.06983 -12.97498 -12.92293 -12.85816 -12.48774 -12.14128 -12.13349 -12.07087 -11.91503 -11.78409 -11.22690 -11.12635 -10.89707 -10.52087 -10.29585 -9.84947 -9.29454 -8.01122 -5.33140 0.43445 1.11322 1.17572 1.28855 1.36861 1.38192 1.45586 2.05512 2.30001 2.47905 3.07601 3.18827 3.30553 3.49474 3.70837 3.79881 3.84606 3.89450 3.93279 3.97102 3.98382 4.19788 4.30975 4.37569 4.41550 4.54401 4.68126 4.73209 4.77332 4.78288 4.79836 4.87686 4.89891 4.96857 5.10073 5.20128 5.27561 5.34196 5.39559 5.53931 5.79008 5.79389 6.15007 6.23000 6.85478 7.08877 7.20569 7.85667 8.03690 9.20224 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002486 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.758886 B =11258.619000 C =12017.151147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.250 4.250 4 C 0.189 3.811 5 O -0.279 6.279 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.564 6.564 9 N -0.598 5.598 10 C 0.110 3.890 11 C -0.145 4.145 12 C 0.181 3.819 13 H 0.053 0.947 14 N -0.748 5.748 15 C -0.217 4.217 16 H 0.063 0.937 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.946 3.054 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.254 1.254 23 C -0.104 4.104 24 H 0.062 0.938 25 C -0.135 4.135 26 C 0.127 3.873 27 N -0.432 5.432 28 O 0.091 5.909 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.197 0.803 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.362 0.638 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.475 8.575 -8.454 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.272 4.272 4 C -0.008 4.008 5 O -0.185 6.185 6 C -0.028 4.028 7 C 0.308 3.692 8 O -0.443 6.443 9 N -0.331 5.331 10 C -0.013 4.013 11 C -0.186 4.186 12 C 0.073 3.927 13 H 0.071 0.929 14 N -0.390 5.390 15 C -0.348 4.348 16 H 0.081 0.919 17 C -0.255 4.255 18 N -0.634 5.634 19 Si 0.775 3.225 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.178 1.178 23 C -0.124 4.124 24 H 0.081 0.919 25 C -0.193 4.193 26 C 0.005 3.995 27 N -0.160 5.160 28 O 0.032 5.968 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.214 0.786 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.195 0.805 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.533 8.314 -8.564 30.009 hybrid contribution 0.761 0.644 1.321 1.655 sum -26.772 8.958 -7.243 29.145 Atomic orbital electron populations 1.20683 0.79878 1.06421 1.06162 1.25166 0.98089 0.84116 0.98004 1.22156 0.87212 1.03191 1.14629 1.22467 0.88720 0.88607 1.01031 1.86219 1.10834 1.31929 1.89531 1.22561 0.81153 0.93011 1.06041 1.20171 0.84318 0.88428 0.76281 1.90707 1.85758 1.16796 1.51060 1.48098 1.04656 1.08527 1.71856 1.21997 1.01306 0.78071 0.99903 1.22480 0.96851 1.01305 0.97976 1.20433 0.89245 0.91948 0.91096 0.92922 1.42786 1.45526 1.33816 1.16841 1.19001 1.12041 1.03422 1.00368 0.91906 1.25395 0.99137 0.99390 1.01583 1.69865 1.28698 1.30810 1.34053 0.85537 0.76451 0.79857 0.80670 1.21030 1.22631 1.17847 1.21665 0.96639 0.95413 0.98659 0.91925 1.21638 0.96006 0.99289 1.02331 1.21685 0.84563 0.94591 0.98693 1.74155 0.99094 1.14366 1.28415 1.84758 1.10090 1.33003 1.68982 0.88321 0.87001 0.86853 0.78615 0.86688 0.87503 0.87943 0.88854 0.92690 0.91230 0.80482 0.93556 0.91255 0.93685 0.92078 0.89285 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.60 16 2 C 0.01 0.12 7.48 25.00 0.19 0.31 16 3 C -0.25 -4.16 11.11 22.50 0.25 -3.91 16 4 C 0.19 4.48 8.01 85.79 0.69 5.17 16 5 O -0.28 -7.61 9.74 -71.22 -0.69 -8.30 16 6 C 0.05 1.17 4.49 71.24 0.32 1.49 16 7 C 0.52 14.36 7.78 87.66 0.68 15.04 16 8 O -0.56 -19.82 15.91 16.01 0.25 -19.56 16 9 N -0.60 -14.81 2.97 -818.98 -2.44 -17.25 16 10 C 0.11 2.39 6.34 86.36 0.55 2.94 16 11 C -0.15 -4.33 5.67 30.68 0.17 -4.15 16 12 C 0.18 6.19 2.19 45.03 0.10 6.29 16 13 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 14 N -0.75 -32.83 4.22 -322.77 -1.36 -34.19 16 15 C -0.22 -11.78 10.41 84.03 0.87 -10.90 16 16 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 17 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 19 Si 0.95 45.24 27.74 68.60 1.90 47.15 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 22 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 23 C -0.10 -3.00 2.46 -10.73 -0.03 -3.02 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 C -0.13 -3.80 9.02 71.98 0.65 -3.15 16 26 C 0.13 3.20 5.71 86.35 0.49 3.69 16 27 N -0.43 -10.17 11.54 -172.60 -1.99 -12.16 16 28 O 0.09 1.73 11.19 71.20 0.80 2.53 16 29 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.12 2.19 7.94 -2.39 -0.02 2.18 16 34 H 0.11 2.26 7.69 -2.39 -0.02 2.24 16 35 H 0.10 1.77 5.93 -2.39 -0.01 1.76 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.36 15.78 5.37 -92.70 -0.50 15.28 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.48 7.36 -2.38 -0.02 1.47 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.09 2.36 7.01 -2.39 -0.02 2.34 16 Total: -1.00 -76.33 369.83 3.37 -72.96 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.45 Total: 23.42 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.15 Total: 7.19 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.49 Total: -125.37 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.36 Total: -25.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Total: -76.33 3.37 -72.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036063958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.002 kcal (2) G-P(sol) polarization free energy of solvation -76.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds