Wall clock time and date at job start Tue Mar 31 2020 14:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35274 * 126.70598 * 2 1 4 4 C 1.41932 * 103.95774 * 179.87640 * 3 2 1 5 5 O 1.35706 * 126.88224 * 180.13758 * 4 3 2 6 6 C 1.42898 * 117.00473 * 180.32598 * 5 4 3 7 7 C 1.50698 * 109.47427 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99858 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00105 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62968 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77553 * 126.37452 * 10 9 7 12 12 C 1.53036 * 109.31420 * 54.62919 * 11 10 9 13 13 H 1.09009 * 109.45843 * 178.61391 * 12 11 10 14 14 N 1.46500 * 109.45903 * 58.66001 * 12 11 10 15 15 C 1.36946 * 120.00052 * 84.99432 * 14 12 11 16 16 H 1.07997 * 119.99773 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99716 * 180.02562 * 15 14 12 18 18 N 1.31614 * 120.00059 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99671 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46768 * 119.99930 * 19 17 15 22 22 H 1.48495 * 109.47095 * 240.00106 * 19 17 15 23 23 C 1.53034 * 109.54002 * 298.63887 * 12 11 10 24 24 H 1.08997 * 109.49838 * 301.41159 * 23 12 11 25 25 C 1.53001 * 109.49646 * 181.34986 * 23 12 11 26 26 C 1.46926 * 120.62974 * 179.72003 * 9 7 6 27 27 N 1.30619 * 106.24301 * 0.39388 * 4 3 2 28 28 O 1.20920 * 111.49308 * 359.74633 * 27 4 3 29 29 H 1.09002 * 109.47152 * 179.70870 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.70970 * 1 2 3 31 31 H 1.09004 * 109.47113 * 299.70951 * 1 2 3 32 32 H 1.07993 * 128.02268 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47352 * 300.00215 * 6 5 4 34 34 H 1.09004 * 109.46974 * 60.00119 * 6 5 4 35 35 H 1.09005 * 109.58609 * 246.16134 * 10 9 7 36 36 H 1.09002 * 109.58921 * 6.44225 * 10 9 7 37 37 H 1.09002 * 109.49844 * 174.58971 * 11 10 9 38 38 H 1.09003 * 109.49691 * 294.68196 * 11 10 9 39 39 H 0.96995 * 120.00148 * 264.99747 * 14 12 11 40 40 H 0.97006 * 120.00095 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47414 * 59.99977 * 25 23 12 42 42 H 1.09003 * 109.47465 * 179.97438 * 25 23 12 43 43 H 1.09005 * 109.47430 * 299.99823 * 25 23 12 44 44 H 1.09003 * 109.58480 * 353.41341 * 26 9 7 45 45 H 1.08998 * 109.58900 * 113.84101 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 0.0030 5 8 4.7953 1.2218 0.0067 6 6 5.9988 0.4514 0.0020 7 6 7.1880 1.3771 0.0077 8 8 7.0212 2.5784 0.0147 9 7 8.4367 0.8701 0.0041 10 6 8.6547 -0.5829 -0.0049 11 6 9.5780 -0.9357 -1.1753 12 6 10.8614 -0.1082 -1.0748 13 1 11.5306 -0.3752 -1.8928 14 7 11.5205 -0.3832 0.2043 15 6 12.3601 -1.4584 0.3247 16 1 12.5365 -2.1033 -0.5234 17 6 12.9842 -1.7192 1.5369 18 7 12.7695 -0.9329 2.5702 19 14 14.1300 -3.1855 1.7009 20 1 14.2029 -3.9042 0.4035 21 1 15.4856 -2.7140 2.0820 22 1 13.6127 -4.1032 2.7474 23 6 10.5185 1.3807 -1.1619 24 1 10.0059 1.5816 -2.1027 25 6 11.8052 2.2058 -1.0952 26 6 9.6059 1.7599 0.0035 27 7 3.4765 -0.7621 -0.0042 28 8 2.3085 -1.0748 -0.0060 29 1 -0.3633 -1.0277 -0.0052 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 0.5093 0.8926 32 1 2.0311 2.1263 -0.0004 33 1 6.0280 -0.1825 0.8882 34 1 6.0276 -0.1721 -0.8917 35 1 9.1198 -0.8885 0.9324 36 1 7.6997 -1.0950 -0.1229 37 1 9.8251 -1.9966 -1.1367 38 1 9.0743 -0.7130 -2.1160 39 1 11.3623 0.1962 0.9659 40 1 13.2054 -1.1154 3.4174 41 1 12.4549 1.9336 -1.9269 42 1 11.5606 3.2662 -1.1577 43 1 12.3169 2.0056 -0.1538 44 1 9.2786 2.7932 -0.1115 45 1 10.1500 1.6490 0.9414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036063959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:22 Heat of formation + Delta-G solvation = -12.152610 kcal Electronic energy + Delta-G solvation = -27641.612682 eV Core-core repulsion = 23662.858112 eV Total energy + Delta-G solvation = -3978.754570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.96423 -41.64959 -40.08014 -38.91376 -35.97799 -34.80832 -34.57190 -33.57907 -33.04607 -30.99376 -30.32046 -28.65419 -27.36301 -26.29175 -25.30404 -24.49542 -23.12617 -22.56936 -21.02926 -19.78570 -19.27563 -19.04863 -18.94967 -18.07458 -17.79101 -17.42679 -17.02214 -16.57758 -16.02832 -15.82860 -15.57077 -15.41276 -14.91351 -14.89442 -14.56976 -14.40598 -14.29752 -14.01201 -13.90714 -13.64443 -13.23041 -13.06799 -12.99513 -12.92554 -12.87110 -12.71996 -12.45917 -12.13418 -12.06773 -12.01805 -11.95430 -11.60926 -11.19694 -11.07410 -10.85339 -10.51828 -10.29323 -9.75677 -8.93987 -7.89754 -5.15983 0.44051 1.12654 1.17477 1.29538 1.48216 1.49912 1.58169 2.07285 2.31221 2.58964 3.07761 3.20132 3.44442 3.74202 3.79161 3.82937 3.88201 3.90209 3.98032 3.98705 4.05447 4.24938 4.34643 4.38149 4.47743 4.59500 4.66704 4.77674 4.80545 4.81146 4.90421 4.91348 4.99108 5.11611 5.15390 5.23755 5.26499 5.28141 5.44780 5.55944 5.60620 5.79712 6.21233 6.32265 6.86579 7.21477 7.39917 8.15667 8.39006 9.33687 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002687 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.362003 B =10417.437602 C =11386.947558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 C -0.250 4.250 4 C 0.187 3.813 5 O -0.279 6.279 6 C 0.055 3.945 7 C 0.518 3.482 8 O -0.567 6.567 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.142 4.142 12 C 0.171 3.829 13 H 0.052 0.948 14 N -0.725 5.725 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.963 3.037 20 H -0.266 1.266 21 H -0.301 1.301 22 H -0.299 1.299 23 C -0.098 4.098 24 H 0.087 0.913 25 C -0.131 4.131 26 C 0.124 3.876 27 N -0.433 5.433 28 O 0.093 5.907 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.025 2.123 -8.754 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.271 4.271 4 C -0.010 4.010 5 O -0.185 6.185 6 C -0.023 4.023 7 C 0.305 3.695 8 O -0.446 6.446 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.183 4.183 12 C 0.062 3.938 13 H 0.070 0.930 14 N -0.366 5.366 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.266 4.266 18 N -0.621 5.621 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.229 1.229 22 H -0.227 1.227 23 C -0.118 4.118 24 H 0.106 0.894 25 C -0.189 4.189 26 C 0.002 3.998 27 N -0.161 5.161 28 O 0.033 5.967 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.214 0.786 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.207 0.793 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.083 1.870 -8.819 24.781 hybrid contribution 1.101 0.006 0.938 1.446 sum -21.982 1.877 -7.881 23.427 Atomic orbital electron populations 1.20688 0.79760 1.06445 1.06179 1.25181 0.98118 0.84072 0.98009 1.22155 0.87103 1.03235 1.14625 1.22499 0.88724 0.88648 1.01109 1.86217 1.10810 1.31929 1.89516 1.22495 0.81105 0.92857 1.05880 1.20203 0.84270 0.88504 0.76480 1.90689 1.85776 1.16744 1.51437 1.48035 1.04541 1.08489 1.71419 1.21800 1.00702 0.77919 1.00375 1.22411 0.97159 1.01382 0.97344 1.20460 0.92348 0.92226 0.88735 0.93037 1.42606 1.53060 1.31741 1.09191 1.19609 1.17186 1.03223 0.95559 0.90525 1.25389 1.03221 1.01758 0.96273 1.69806 1.49138 1.41241 1.01894 0.85217 0.78329 0.79600 0.77488 1.19047 1.22859 1.22694 1.21567 0.96159 0.95953 0.98143 0.89449 1.21600 0.96209 0.99126 1.01994 1.21498 0.85060 0.94232 0.98983 1.74168 0.99111 1.14380 1.28410 1.84754 1.10052 1.33002 1.68915 0.88271 0.86831 0.86977 0.78578 0.87720 0.86775 0.92145 0.88248 0.90991 0.90388 0.79320 0.94415 0.91981 0.91687 0.94073 0.89678 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C 0.01 0.14 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.60 11.11 22.50 0.25 -4.35 16 4 C 0.19 4.89 8.01 85.79 0.69 5.58 16 5 O -0.28 -8.48 9.74 -71.23 -0.69 -9.18 16 6 C 0.05 1.50 4.49 71.24 0.32 1.82 16 7 C 0.52 17.12 7.78 87.66 0.68 17.80 16 8 O -0.57 -22.70 15.91 16.00 0.25 -22.45 16 9 N -0.59 -18.98 2.98 -819.66 -2.44 -21.43 16 10 C 0.11 3.45 6.09 86.36 0.53 3.97 16 11 C -0.14 -4.31 5.78 30.67 0.18 -4.13 16 12 C 0.17 6.07 2.53 45.01 0.11 6.18 16 13 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 14 N -0.72 -33.02 3.64 -322.81 -1.18 -34.20 16 15 C -0.22 -11.51 9.93 84.03 0.83 -10.67 16 16 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.97 -57.57 13.06 21.65 0.28 -57.28 16 19 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 C -0.10 -3.08 2.65 -10.85 -0.03 -3.11 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 C -0.13 -4.09 9.06 71.98 0.65 -3.44 16 26 C 0.12 4.22 5.40 86.23 0.47 4.69 16 27 N -0.43 -11.12 11.54 -172.60 -1.99 -13.12 16 28 O 0.09 1.91 11.19 71.32 0.80 2.71 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.10 2.68 7.94 -2.39 -0.02 2.66 16 34 H 0.11 2.67 7.69 -2.38 -0.02 2.66 16 35 H 0.06 2.23 7.74 -2.38 -0.02 2.21 16 36 H 0.10 2.38 5.93 -2.39 -0.01 2.37 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.37 18.71 5.94 -92.71 -0.55 18.16 16 40 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.53 7.54 -2.38 -0.02 1.51 16 44 H 0.08 2.91 7.01 -2.39 -0.02 2.89 16 45 H 0.06 2.14 6.64 -2.39 -0.02 2.13 16 Total: -1.00 -71.27 369.00 3.59 -67.68 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.46 Total: 28.62 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.08 Total: 11.57 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -5.33 Total: -126.02 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: 0.36 Total: -28.92 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.27 3.59 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036063959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.523 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds