Wall clock time and date at job start Tue Mar 31 2020 13:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46903 * 111.00037 * 2 1 4 4 C 1.46900 * 110.99652 * 123.95348 * 2 1 3 5 5 C 1.50696 * 109.47331 * 66.04762 * 4 2 1 6 6 C 1.37475 * 123.34781 * 259.97505 * 5 4 2 7 7 C 1.33823 * 115.09701 * 180.02562 * 6 5 4 8 8 S 1.70609 * 110.95654 * 359.97438 * 7 6 5 9 9 C 1.36646 * 123.35229 * 80.00850 * 5 4 2 10 10 C 1.46575 * 125.45981 * 359.94908 * 9 5 4 11 11 O 1.21702 * 120.00025 * 359.97438 * 10 9 5 12 12 N 1.34779 * 120.00239 * 179.97438 * 10 9 5 13 13 C 1.46503 * 120.00086 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47098 * 180.02562 * 13 12 10 15 15 H 1.08992 * 112.73969 * 56.23962 * 14 13 12 16 16 C 1.53498 * 113.46655 * 187.06560 * 14 13 12 17 17 C 1.53494 * 83.34524 * 140.84870 * 16 14 13 18 18 N 1.47067 * 113.46567 * 285.49751 * 14 13 12 19 19 C 1.36942 * 136.06052 * 38.06620 * 18 14 13 20 20 H 1.08000 * 119.99601 * 359.97438 * 19 18 14 21 21 C 1.38812 * 120.00149 * 179.97438 * 19 18 14 22 22 N 1.31622 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46864 * 60.00123 * 23 21 19 25 25 H 1.48496 * 109.47253 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47251 * 300.00096 * 23 21 19 27 27 H 1.09006 * 109.46882 * 296.05085 * 1 2 3 28 28 H 1.08997 * 109.46669 * 56.04524 * 1 2 3 29 29 H 1.08990 * 109.47155 * 176.04854 * 1 2 3 30 30 H 1.08997 * 109.46955 * 183.95707 * 3 2 1 31 31 H 1.09005 * 109.46900 * 303.95327 * 3 2 1 32 32 H 1.08999 * 109.46987 * 63.95087 * 3 2 1 33 33 H 1.09004 * 109.46977 * 306.04403 * 4 2 1 34 34 H 1.08998 * 109.46698 * 186.04837 * 4 2 1 35 35 H 1.07995 * 122.45133 * 359.76127 * 6 5 4 36 36 H 1.07997 * 124.52024 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99916 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47155 * 300.00377 * 13 12 10 39 39 H 1.09009 * 109.46723 * 60.00237 * 13 12 10 40 40 H 1.09005 * 114.19811 * 254.43221 * 16 14 13 41 41 H 1.09002 * 114.20744 * 27.25766 * 16 14 13 42 42 H 1.09004 * 113.46549 * 219.15291 * 17 16 14 43 43 H 1.08998 * 113.47287 * 88.70714 * 17 16 14 44 44 H 0.97002 * 119.99290 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5851 -2.8181 1.6258 7 6 0.4162 -4.1184 1.3585 8 16 1.5907 -4.6714 0.2514 9 6 2.3254 -3.0765 0.1603 10 6 3.4891 -2.7218 -0.6574 11 8 3.9159 -1.5821 -0.6463 12 7 4.0864 -3.6577 -1.4214 13 6 5.2492 -3.3031 -2.2390 14 6 5.7307 -4.5378 -3.0035 15 1 4.9488 -4.9847 -3.6173 16 6 7.0489 -4.3142 -3.7576 17 6 7.3535 -5.7430 -3.2868 18 7 6.4395 -5.5104 -2.1583 19 6 6.3073 -5.9885 -0.8819 20 1 5.5120 -5.6242 -0.2485 21 6 7.1954 -6.9414 -0.4021 22 7 8.1643 -7.3858 -1.1742 23 14 7.0154 -7.5931 1.3392 24 1 5.6843 -8.2335 1.4929 25 1 8.0794 -8.5940 1.6057 26 1 7.1387 -6.4702 2.3032 27 1 -0.3633 0.4513 0.9233 28 1 -0.3632 0.5740 -0.8524 29 1 -0.3633 -1.0251 -0.0708 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 -0.0553 -2.2788 2.3080 36 1 -0.3600 -4.7355 1.7864 37 1 3.7460 -4.5660 -1.4305 38 1 4.9708 -2.5231 -2.9476 39 1 6.0494 -2.9395 -1.5942 40 1 6.9347 -4.2141 -4.8370 41 1 7.6919 -3.5519 -3.3175 42 1 8.3902 -5.8882 -2.9829 43 1 7.0044 -6.5112 -3.9768 44 1 8.7851 -8.0514 -0.8388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038305882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:02 Heat of formation + Delta-G solvation = 67.913894 kcal Electronic energy + Delta-G solvation = -25475.711042 eV Core-core repulsion = 21943.181287 eV Total energy + Delta-G solvation = -3532.529755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.71574 -38.56065 -37.72013 -36.29229 -33.95258 -32.20640 -30.45651 -28.63097 -27.93418 -27.58503 -26.72753 -24.12599 -23.45611 -22.22502 -21.63185 -20.82352 -19.40180 -18.64212 -18.10044 -16.65068 -15.99878 -15.60261 -15.44178 -15.18947 -15.00785 -14.95781 -14.44715 -14.28974 -13.93150 -13.56814 -13.19781 -13.00209 -12.89941 -12.60962 -12.45480 -12.14941 -11.83643 -11.69917 -11.63702 -11.50986 -11.47485 -11.09536 -10.95865 -10.83780 -10.75526 -10.56703 -9.97312 -9.82872 -9.57243 -9.18674 -8.83680 -8.79974 -8.54780 -8.44494 -8.25300 -6.89030 -5.76036 -3.08474 0.58771 1.52448 1.92478 2.36474 3.38901 3.43795 3.44395 3.52309 3.59988 4.12160 4.44366 4.80583 4.95406 5.05869 5.15233 5.22721 5.25760 5.28071 5.38807 5.42391 5.50927 5.55683 5.58858 5.74954 5.78701 5.81934 5.90672 5.94010 5.94696 6.14441 6.27242 6.29541 6.37358 6.43524 6.61548 6.74397 6.92532 7.02576 7.07954 7.23786 7.40772 7.58572 7.93043 7.98384 8.60455 9.03818 9.71125 10.63976 11.41108 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004072 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.911469 B = 6874.327685 C = 8063.278397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.031 3.969 4 C 0.116 3.884 5 C -0.034 4.034 6 C -0.144 4.144 7 C -0.241 4.241 8 S 0.210 5.790 9 C -0.233 4.233 10 C 0.585 3.415 11 O -0.521 6.521 12 N -0.712 5.712 13 C 0.125 3.875 14 C 0.126 3.874 15 H 0.048 0.952 16 C -0.160 4.160 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.213 4.213 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.398 0.602 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 10.820 1.557 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.250 5.250 3 C -0.117 4.117 4 C -0.013 4.013 5 C -0.050 4.050 6 C -0.176 4.176 7 C -0.379 4.379 8 S 0.478 5.522 9 C -0.355 4.355 10 C 0.370 3.630 11 O -0.399 6.399 12 N -0.362 5.362 13 C 0.001 3.999 14 C 0.018 3.982 15 H 0.065 0.935 16 C -0.199 4.199 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.341 4.341 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.736 3.264 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.184 0.816 37 H 0.233 0.767 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.963 9.744 0.739 17.871 hybrid contribution -1.118 0.602 2.494 2.799 sum -16.081 10.347 3.234 19.394 Atomic orbital electron populations 1.22436 0.88107 1.02154 0.99867 1.61813 1.06919 1.13564 1.42749 1.22324 1.01572 0.88149 0.99643 1.20763 1.02114 0.87691 0.90735 1.19216 0.94080 0.96322 0.95361 1.19832 0.99769 0.94340 1.03638 1.25195 1.06169 1.00174 1.06320 1.83368 1.20964 1.09031 1.38817 1.24637 1.04670 0.97719 1.08475 1.16841 0.81589 0.85270 0.79278 1.90767 1.64540 1.19420 1.65164 1.45860 1.32130 1.12560 1.45699 1.21802 0.86818 0.97812 0.93458 1.22433 0.94474 0.89592 0.91699 0.93472 1.23654 0.97487 1.00871 0.97903 1.22026 0.97397 0.90627 0.87339 1.45669 1.32027 1.46355 1.08649 1.18792 1.11473 1.17820 0.85983 0.90333 1.24750 0.98050 0.99375 0.98066 1.69819 1.18160 1.33202 1.35343 0.86299 0.77194 0.78561 0.84374 1.21089 1.21542 1.21083 0.96128 0.91720 0.91420 0.90719 0.91662 0.96267 0.94590 0.88005 0.84420 0.81646 0.76740 0.92083 0.90981 0.92341 0.90180 0.90993 0.95758 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.33 60.07 0.56 0.80 16 2 N -0.53 -6.84 4.84 -252.72 -1.22 -8.06 16 3 C 0.03 0.35 9.57 60.07 0.57 0.92 16 4 C 0.12 1.55 4.35 -4.98 -0.02 1.52 16 5 C -0.03 -0.47 4.54 -105.48 -0.48 -0.95 16 6 C -0.14 -1.62 9.17 -41.41 -0.38 -2.00 16 7 C -0.24 -2.59 10.92 29.18 0.32 -2.27 16 8 S 0.21 2.70 22.16 -107.50 -2.38 0.32 16 9 C -0.23 -3.60 6.45 -36.80 -0.24 -3.84 16 10 C 0.59 10.52 7.78 -12.90 -0.10 10.42 16 11 O -0.52 -10.31 14.34 5.19 0.07 -10.24 16 12 N -0.71 -12.78 5.33 -61.65 -0.33 -13.11 16 13 C 0.13 2.31 5.52 -4.04 -0.02 2.29 16 14 C 0.13 2.44 4.10 -72.39 -0.30 2.14 16 15 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 16 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 17 C 0.15 3.46 7.39 -8.50 -0.06 3.40 16 18 N -0.60 -14.64 3.65 -176.99 -0.65 -15.29 16 19 C -0.21 -5.72 10.55 -15.06 -0.16 -5.88 16 20 H 0.08 2.03 7.51 -52.49 -0.39 1.64 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -26.88 11.51 55.49 0.64 -26.25 16 23 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.74 6.71 -51.93 -0.35 0.39 16 30 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.10 1.57 6.57 -51.93 -0.34 1.23 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.40 6.99 7.49 -40.82 -0.31 6.68 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.50 8.14 -51.92 -0.42 1.07 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 42 H 0.07 1.84 7.13 -51.93 -0.37 1.47 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -31.40 373.29 -10.68 -42.09 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.81 Total: 4.76 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.61 Total: 3.19 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -1.56 Total: -62.70 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.38 Total: 0.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.40 -10.68 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038305882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.000 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds