Wall clock time and date at job start Tue Mar 31 2020 13:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46903 * 111.00037 * 2 1 4 4 C 1.46900 * 110.99652 * 123.95348 * 2 1 3 5 5 C 1.50696 * 109.47331 * 66.04762 * 4 2 1 6 6 C 1.37475 * 123.34781 * 259.97505 * 5 4 2 7 7 C 1.33823 * 115.09701 * 180.02562 * 6 5 4 8 8 S 1.70609 * 110.95654 * 359.97438 * 7 6 5 9 9 C 1.36646 * 123.35229 * 80.00850 * 5 4 2 10 10 C 1.46575 * 125.45981 * 359.94908 * 9 5 4 11 11 O 1.21702 * 120.00025 * 359.97438 * 10 9 5 12 12 N 1.34779 * 120.00239 * 179.97438 * 10 9 5 13 13 C 1.46503 * 120.00086 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47098 * 180.02562 * 13 12 10 15 15 H 1.08992 * 112.73969 * 56.23962 * 14 13 12 16 16 C 1.53498 * 113.46655 * 187.06560 * 14 13 12 17 17 C 1.53494 * 83.34524 * 140.84870 * 16 14 13 18 18 N 1.47067 * 113.46567 * 285.49751 * 14 13 12 19 19 C 1.36942 * 136.06052 * 38.06620 * 18 14 13 20 20 H 1.08000 * 119.99601 * 359.97438 * 19 18 14 21 21 C 1.38812 * 120.00149 * 179.97438 * 19 18 14 22 22 N 1.31622 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46864 * 60.00123 * 23 21 19 25 25 H 1.48496 * 109.47253 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47251 * 300.00096 * 23 21 19 27 27 H 1.09006 * 109.46882 * 296.05085 * 1 2 3 28 28 H 1.08997 * 109.46669 * 56.04524 * 1 2 3 29 29 H 1.08990 * 109.47155 * 176.04854 * 1 2 3 30 30 H 1.08997 * 109.46955 * 183.95707 * 3 2 1 31 31 H 1.09005 * 109.46900 * 303.95327 * 3 2 1 32 32 H 1.08999 * 109.46987 * 63.95087 * 3 2 1 33 33 H 1.09004 * 109.46977 * 306.04403 * 4 2 1 34 34 H 1.08998 * 109.46698 * 186.04837 * 4 2 1 35 35 H 1.07995 * 122.45133 * 359.76127 * 6 5 4 36 36 H 1.07997 * 124.52024 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99916 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47155 * 300.00377 * 13 12 10 39 39 H 1.09009 * 109.46723 * 60.00237 * 13 12 10 40 40 H 1.09005 * 114.19811 * 254.43221 * 16 14 13 41 41 H 1.09002 * 114.20744 * 27.25766 * 16 14 13 42 42 H 1.09004 * 113.46549 * 219.15291 * 17 16 14 43 43 H 1.08998 * 113.47287 * 88.70714 * 17 16 14 44 44 H 0.97002 * 119.99290 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5851 -2.8181 1.6258 7 6 0.4162 -4.1184 1.3585 8 16 1.5907 -4.6714 0.2514 9 6 2.3254 -3.0765 0.1603 10 6 3.4891 -2.7218 -0.6574 11 8 3.9159 -1.5821 -0.6463 12 7 4.0864 -3.6577 -1.4214 13 6 5.2492 -3.3031 -2.2390 14 6 5.7307 -4.5378 -3.0035 15 1 4.9488 -4.9847 -3.6173 16 6 7.0489 -4.3142 -3.7576 17 6 7.3535 -5.7430 -3.2868 18 7 6.4395 -5.5104 -2.1583 19 6 6.3073 -5.9885 -0.8819 20 1 5.5120 -5.6242 -0.2485 21 6 7.1954 -6.9414 -0.4021 22 7 8.1643 -7.3858 -1.1742 23 14 7.0154 -7.5931 1.3392 24 1 5.6843 -8.2335 1.4929 25 1 8.0794 -8.5940 1.6057 26 1 7.1387 -6.4702 2.3032 27 1 -0.3633 0.4513 0.9233 28 1 -0.3632 0.5740 -0.8524 29 1 -0.3633 -1.0251 -0.0708 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 -0.0553 -2.2788 2.3080 36 1 -0.3600 -4.7355 1.7864 37 1 3.7460 -4.5660 -1.4305 38 1 4.9708 -2.5231 -2.9476 39 1 6.0494 -2.9395 -1.5942 40 1 6.9347 -4.2141 -4.8370 41 1 7.6919 -3.5519 -3.3175 42 1 8.3902 -5.8882 -2.9829 43 1 7.0044 -6.5112 -3.9768 44 1 8.7851 -8.0514 -0.8388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038305882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:02 Heat of formation + Delta-G solvation = 46.539196 kcal Electronic energy + Delta-G solvation = -25476.637918 eV Core-core repulsion = 21943.181287 eV Total energy + Delta-G solvation = -3533.456632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98730 -39.99487 -39.06815 -37.21540 -35.43375 -34.22580 -31.49989 -30.04763 -29.71805 -28.43308 -27.98863 -25.37653 -25.11545 -23.72476 -22.55575 -22.15073 -21.07693 -19.96830 -19.17969 -18.43697 -17.15514 -17.09231 -16.75297 -16.54776 -16.23803 -15.95414 -15.87491 -15.63952 -15.18749 -15.08262 -14.76261 -14.39626 -13.85030 -13.83184 -13.50284 -13.27992 -13.26105 -13.04197 -12.93227 -12.69021 -12.61154 -12.57185 -12.52082 -12.43764 -12.33296 -11.84526 -11.79417 -11.62721 -11.16430 -10.84488 -10.73615 -10.07837 -9.69655 -9.51100 -9.15300 -8.87449 -7.85699 -5.17201 -0.44062 0.52141 0.97757 1.40820 1.44218 1.46834 1.52226 2.19876 2.27698 2.48955 3.22101 3.36209 3.45875 3.82477 3.92045 3.95732 4.05830 4.19339 4.30147 4.35235 4.36212 4.48509 4.52442 4.63249 4.66265 4.71290 4.74204 4.81361 4.89771 4.98886 5.02809 5.05162 5.06813 5.10655 5.33023 5.33921 5.35897 5.47237 5.60611 5.75664 5.98917 6.10776 6.21567 6.54618 6.95777 7.23804 7.65912 8.65749 9.31668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004072 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.911469 B = 6874.327685 C = 8063.278397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.035 3.965 4 C 0.118 3.882 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.216 4.216 8 S 0.202 5.798 9 C -0.277 4.277 10 C 0.581 3.419 11 O -0.549 6.549 12 N -0.715 5.715 13 C 0.136 3.864 14 C 0.131 3.869 15 H 0.067 0.933 16 C -0.133 4.133 17 C 0.144 3.856 18 N -0.628 5.628 19 C -0.207 4.207 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.296 1.296 26 H -0.285 1.285 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.201 0.799 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.023 0.977 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 11.545 2.181 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.113 4.113 4 C -0.011 4.011 5 C -0.043 4.043 6 C -0.180 4.180 7 C -0.353 4.353 8 S 0.471 5.529 9 C -0.398 4.398 10 C 0.369 3.631 11 O -0.429 6.429 12 N -0.365 5.365 13 C 0.011 3.989 14 C 0.025 3.975 15 H 0.084 0.916 16 C -0.171 4.171 17 C 0.018 3.982 18 N -0.355 5.355 19 C -0.335 4.335 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.792 3.208 24 H -0.197 1.197 25 H -0.222 1.222 26 H -0.211 1.211 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.218 0.782 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.009 10.488 1.348 20.884 hybrid contribution -0.275 0.443 2.284 2.343 sum -18.284 10.931 3.632 21.610 Atomic orbital electron populations 1.22431 0.86483 1.02206 1.01056 1.61770 1.08519 1.14316 1.42897 1.22282 1.00322 0.87793 1.00941 1.20677 1.00524 0.88007 0.91928 1.19526 0.94048 0.96320 0.94368 1.20045 0.99419 0.94654 1.03927 1.25620 1.05311 1.00199 1.04197 1.83371 1.21756 1.07847 1.39928 1.24454 1.05311 0.99684 1.10338 1.17230 0.82063 0.84786 0.79053 1.90745 1.65642 1.20401 1.66120 1.45860 1.31960 1.12746 1.45978 1.21583 0.86425 0.97642 0.93237 1.22578 0.95298 0.88648 0.91016 0.91572 1.23473 0.96011 0.97369 1.00280 1.22041 0.95276 0.93601 0.87256 1.45984 1.33574 1.47243 1.08657 1.19114 1.10549 1.16532 0.87313 0.89957 1.25485 0.98458 1.00601 1.01490 1.70001 1.19256 1.34156 1.36799 0.85379 0.77333 0.77675 0.80444 1.19697 1.22238 1.21127 0.94488 0.90959 0.91844 0.92784 0.90574 0.94664 0.92530 0.91005 0.81482 0.78179 0.76580 0.90259 0.93822 0.88167 0.90212 0.94518 0.95929 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.33 127.69 1.19 1.68 16 2 N -0.55 -13.65 4.84 -953.46 -4.62 -18.27 16 3 C 0.03 0.74 9.57 127.69 1.22 1.96 16 4 C 0.12 3.03 4.35 85.56 0.37 3.40 16 5 C -0.03 -0.68 4.54 -20.42 -0.09 -0.77 16 6 C -0.15 -2.87 9.17 21.09 0.19 -2.68 16 7 C -0.22 -3.86 10.92 66.82 0.73 -3.13 16 8 S 0.20 4.87 22.16 -56.49 -1.25 3.62 16 9 C -0.28 -8.37 6.45 24.07 0.16 -8.22 16 10 C 0.58 21.13 7.78 86.42 0.67 21.80 16 11 O -0.55 -22.30 14.34 -4.35 -0.06 -22.36 16 12 N -0.72 -25.68 5.33 -467.16 -2.49 -28.17 16 13 C 0.14 4.96 5.52 86.38 0.48 5.44 16 14 C 0.13 4.94 4.10 41.79 0.17 5.12 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.13 -4.63 8.03 30.93 0.25 -4.38 16 17 C 0.14 6.63 7.39 83.18 0.61 7.25 16 18 N -0.63 -30.81 3.65 -713.88 -2.61 -33.42 16 19 C -0.21 -11.21 10.55 84.03 0.89 -10.32 16 20 H 0.08 4.29 7.51 -2.91 -0.02 4.27 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.95 -57.49 11.51 21.65 0.25 -57.24 16 23 Si 0.96 45.89 29.55 68.60 2.03 47.91 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 27 H 0.04 0.56 8.14 -2.38 -0.02 0.55 16 28 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.06 1.22 6.71 -2.39 -0.02 1.21 16 30 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 31 H 0.08 1.43 8.12 -2.38 -0.02 1.41 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 1.18 8.08 -2.38 -0.02 1.16 16 34 H 0.07 2.28 6.57 -2.39 -0.02 2.26 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.40 13.96 7.49 -92.71 -0.69 13.27 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.08 2.81 8.12 -2.39 -0.02 2.79 16 42 H 0.04 1.94 7.13 -2.39 -0.02 1.92 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.23 373.29 -1.14 -71.37 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.31 Total: 22.77 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 7.31 Total: 13.79 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -9.46 Total: -137.10 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.25 Total: 3.62 kcal Total: -70.23 -1.14 -71.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038305882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.905 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds