Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00117 * 2 1 4 4 C 1.46900 * 110.99974 * 123.95353 * 2 1 3 5 5 C 1.50705 * 109.47110 * 66.04649 * 4 2 1 6 6 C 1.37466 * 123.35280 * 259.97267 * 5 4 2 7 7 C 1.33811 * 115.10495 * 180.02562 * 6 5 4 8 8 S 1.70624 * 110.95290 * 359.72587 * 7 6 5 9 9 C 1.36647 * 123.35106 * 79.99956 * 5 4 2 10 10 C 1.46591 * 125.45828 * 359.97438 * 9 5 4 11 11 O 1.21693 * 119.99870 * 359.97438 * 10 9 5 12 12 N 1.34771 * 119.99644 * 180.02562 * 10 9 5 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.96693 * 306.67860 * 14 13 12 16 16 C 1.53944 * 113.77224 * 175.00107 * 14 13 12 17 17 C 1.53950 * 86.29079 * 222.09231 * 16 14 13 18 18 N 1.47585 * 113.77049 * 78.49995 * 14 13 12 19 19 C 1.36932 * 134.49495 * 318.94949 * 18 14 13 20 20 H 1.08007 * 119.99670 * 359.97438 * 19 18 14 21 21 C 1.38814 * 120.00453 * 179.97438 * 19 18 14 22 22 N 1.31623 * 119.99581 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00371 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47027 * 90.00203 * 23 21 19 25 25 H 1.48495 * 109.47079 * 210.00052 * 23 21 19 26 26 H 1.48506 * 109.47168 * 330.00300 * 23 21 19 27 27 H 1.08996 * 109.46754 * 296.04467 * 1 2 3 28 28 H 1.09001 * 109.47285 * 56.04552 * 1 2 3 29 29 H 1.09001 * 109.46844 * 176.04967 * 1 2 3 30 30 H 1.08997 * 109.46800 * 183.95572 * 3 2 1 31 31 H 1.09003 * 109.46901 * 303.95822 * 3 2 1 32 32 H 1.09003 * 109.46783 * 63.95033 * 3 2 1 33 33 H 1.08996 * 109.47606 * 306.04613 * 4 2 1 34 34 H 1.09004 * 109.47046 * 186.04447 * 4 2 1 35 35 H 1.08001 * 122.44919 * 0.04914 * 6 5 4 36 36 H 1.07997 * 124.52575 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 39 39 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 40 40 H 1.09005 * 113.73705 * 336.43429 * 16 14 13 41 41 H 1.08994 * 113.74699 * 107.63859 * 16 14 13 42 42 H 1.08997 * 113.77044 * 137.90682 * 17 16 14 43 43 H 1.08997 * 113.76603 * 269.19409 * 17 16 14 44 44 H 0.97001 * 120.00214 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2205 0.9729 6 6 0.5853 -2.8183 1.6257 7 6 0.4163 -4.1185 1.3584 8 16 1.5866 -4.6698 0.2459 9 6 2.3253 -3.0764 0.1600 10 6 3.4892 -2.7217 -0.6575 11 8 3.9163 -1.5823 -0.6461 12 7 4.0857 -3.6574 -1.4225 13 6 5.2493 -3.3030 -2.2390 14 6 5.7305 -4.5375 -3.0041 15 1 5.9131 -5.3949 -2.3563 16 6 6.8776 -4.2488 -3.9893 17 6 6.1344 -5.1740 -4.9700 18 7 4.9196 -4.8519 -4.1964 19 6 3.5786 -4.8468 -4.4736 20 1 2.8703 -4.5623 -3.7095 21 6 3.1295 -5.2072 -5.7367 22 7 3.9928 -5.5534 -6.6681 23 14 1.3002 -5.2008 -6.1146 24 1 0.9054 -3.8643 -6.6277 25 1 1.0032 -6.2324 -7.1407 26 1 0.5378 -5.5006 -4.8760 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6611 1.1756 35 1 -0.0579 -2.2779 2.3046 36 1 -0.3603 -4.7354 1.7858 37 1 3.7451 -4.5655 -1.4319 38 1 4.9721 -2.5217 -2.9468 39 1 6.0496 -2.9412 -1.5935 40 1 6.9245 -3.2099 -4.3160 41 1 7.8432 -4.6360 -3.6643 42 1 6.1142 -4.8027 -5.9946 43 1 6.4363 -6.2191 -4.9023 44 1 3.6791 -5.8048 -7.5508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038305885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = 64.754398 kcal Electronic energy + Delta-G solvation = -25548.152821 eV Core-core repulsion = 22015.486060 eV Total energy + Delta-G solvation = -3532.666761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71118 -38.46132 -37.61544 -36.26746 -33.96804 -32.14962 -30.45947 -28.63547 -27.85694 -27.52663 -26.75693 -24.12660 -23.33236 -22.35158 -21.60721 -20.85242 -19.33927 -18.60066 -18.09873 -16.62736 -16.00013 -15.58363 -15.43882 -15.17055 -15.00413 -14.93328 -14.44262 -14.26484 -13.90776 -13.57808 -13.20029 -12.98881 -12.92146 -12.61446 -12.40409 -12.13484 -11.80108 -11.65682 -11.59349 -11.46294 -11.39161 -11.07812 -10.98079 -10.85143 -10.71955 -10.49834 -9.96395 -9.72920 -9.60726 -9.30168 -8.84454 -8.76531 -8.54761 -8.46578 -8.19926 -6.86136 -5.73101 -3.05294 0.57775 1.51523 1.91275 2.35885 3.41192 3.45963 3.47586 3.48263 3.62435 4.16704 4.46691 4.80224 4.95104 5.05986 5.15131 5.22392 5.27146 5.31182 5.40087 5.44615 5.54742 5.58792 5.64572 5.74473 5.79161 5.88543 5.91320 5.95328 5.99331 6.11727 6.26361 6.29071 6.38184 6.43398 6.64948 6.75040 6.92173 7.08318 7.12739 7.28075 7.43998 7.62764 7.91466 8.02008 8.59277 9.08095 9.74758 10.62568 11.43645 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004189 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.655428 B = 6682.215379 C = 7164.426589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.032 3.968 4 C 0.117 3.883 5 C -0.035 4.035 6 C -0.144 4.144 7 C -0.241 4.241 8 S 0.208 5.792 9 C -0.234 4.234 10 C 0.585 3.415 11 O -0.520 6.520 12 N -0.713 5.713 13 C 0.127 3.873 14 C 0.124 3.876 15 H 0.049 0.951 16 C -0.155 4.155 17 C 0.159 3.841 18 N -0.602 5.602 19 C -0.217 4.217 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.398 0.602 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.026 0.974 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 5.647 17.533 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.250 5.250 3 C -0.116 4.116 4 C -0.012 4.012 5 C -0.050 4.050 6 C -0.176 4.176 7 C -0.378 4.378 8 S 0.477 5.523 9 C -0.355 4.355 10 C 0.370 3.630 11 O -0.398 6.398 12 N -0.363 5.363 13 C 0.003 3.997 14 C 0.017 3.983 15 H 0.066 0.934 16 C -0.194 4.194 17 C 0.034 3.966 18 N -0.328 5.328 19 C -0.344 4.344 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.735 3.265 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.156 0.844 36 H 0.184 0.816 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.204 4.749 16.182 17.166 hybrid contribution -2.149 1.009 1.181 2.651 sum -5.353 5.758 17.362 19.059 Atomic orbital electron populations 1.22439 0.87970 1.02257 0.99875 1.61788 1.07039 1.13599 1.42589 1.22319 1.01494 0.88137 0.99650 1.20749 1.01952 0.87709 0.90784 1.19233 0.94049 0.96294 0.95409 1.19829 0.99696 0.94292 1.03739 1.25191 1.06412 1.00363 1.05865 1.83350 1.21552 1.09260 1.38131 1.24638 1.04713 0.97974 1.08197 1.16839 0.81575 0.85220 0.79325 1.90767 1.64356 1.19116 1.65559 1.45858 1.32571 1.12749 1.45130 1.21759 0.86103 0.99009 0.92867 1.22519 0.91357 0.93724 0.90721 0.93377 1.23768 0.95706 1.01337 0.98580 1.22193 0.83250 0.94423 0.96764 1.46065 1.01531 1.78209 1.06982 1.18936 0.80599 1.38630 0.96252 0.90416 1.24731 0.97473 1.01846 0.96238 1.69818 1.32047 1.51359 1.03514 0.86231 0.85060 0.77377 0.77820 1.21570 1.21717 1.20642 0.96169 0.91582 0.91405 0.90782 0.91568 0.96346 0.94683 0.88134 0.84409 0.81648 0.76823 0.90739 0.92090 0.90485 0.92833 0.90822 0.95611 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.33 60.07 0.56 0.83 16 2 N -0.53 -7.35 4.84 -252.71 -1.22 -8.57 16 3 C 0.03 0.38 9.57 60.07 0.57 0.96 16 4 C 0.12 1.55 4.35 -4.97 -0.02 1.53 16 5 C -0.03 -0.47 4.54 -105.48 -0.48 -0.95 16 6 C -0.14 -1.60 9.17 -41.42 -0.38 -1.98 16 7 C -0.24 -2.56 10.92 29.18 0.32 -2.24 16 8 S 0.21 2.65 22.16 -107.50 -2.38 0.27 16 9 C -0.23 -3.57 6.45 -36.79 -0.24 -3.81 16 10 C 0.59 10.45 7.78 -12.89 -0.10 10.35 16 11 O -0.52 -10.25 14.34 5.20 0.07 -10.18 16 12 N -0.71 -12.67 5.52 -61.65 -0.34 -13.01 16 13 C 0.13 2.33 5.54 -4.04 -0.02 2.31 16 14 C 0.12 2.41 4.33 -66.86 -0.29 2.12 16 15 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.15 -2.83 7.86 -25.80 -0.20 -3.04 16 17 C 0.16 3.65 7.52 -2.97 -0.02 3.63 16 18 N -0.60 -14.73 3.57 -170.71 -0.61 -15.34 16 19 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 20 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.11 11.38 55.49 0.63 -26.48 16 23 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.07 0.85 6.71 -51.93 -0.35 0.50 16 30 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.10 1.48 6.57 -51.93 -0.34 1.14 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.40 6.85 7.59 -40.82 -0.31 6.55 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.51 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -31.86 373.85 -10.62 -42.48 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.83 Total: 4.47 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.56 Total: 3.41 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -1.54 Total: -63.40 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.38 Total: 0.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.86 -10.62 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038305885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.235 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds