Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00117 * 2 1 4 4 C 1.46900 * 110.99974 * 123.95353 * 2 1 3 5 5 C 1.50705 * 109.47110 * 66.04649 * 4 2 1 6 6 C 1.37466 * 123.35280 * 259.97267 * 5 4 2 7 7 C 1.33811 * 115.10495 * 180.02562 * 6 5 4 8 8 S 1.70624 * 110.95290 * 359.72587 * 7 6 5 9 9 C 1.36647 * 123.35106 * 79.99956 * 5 4 2 10 10 C 1.46591 * 125.45828 * 359.97438 * 9 5 4 11 11 O 1.21693 * 119.99870 * 359.97438 * 10 9 5 12 12 N 1.34771 * 119.99644 * 180.02562 * 10 9 5 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.96693 * 306.67860 * 14 13 12 16 16 C 1.53944 * 113.77224 * 175.00107 * 14 13 12 17 17 C 1.53950 * 86.29079 * 222.09231 * 16 14 13 18 18 N 1.47585 * 113.77049 * 78.49995 * 14 13 12 19 19 C 1.36932 * 134.49495 * 318.94949 * 18 14 13 20 20 H 1.08007 * 119.99670 * 359.97438 * 19 18 14 21 21 C 1.38814 * 120.00453 * 179.97438 * 19 18 14 22 22 N 1.31623 * 119.99581 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00371 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47027 * 90.00203 * 23 21 19 25 25 H 1.48495 * 109.47079 * 210.00052 * 23 21 19 26 26 H 1.48506 * 109.47168 * 330.00300 * 23 21 19 27 27 H 1.08996 * 109.46754 * 296.04467 * 1 2 3 28 28 H 1.09001 * 109.47285 * 56.04552 * 1 2 3 29 29 H 1.09001 * 109.46844 * 176.04967 * 1 2 3 30 30 H 1.08997 * 109.46800 * 183.95572 * 3 2 1 31 31 H 1.09003 * 109.46901 * 303.95822 * 3 2 1 32 32 H 1.09003 * 109.46783 * 63.95033 * 3 2 1 33 33 H 1.08996 * 109.47606 * 306.04613 * 4 2 1 34 34 H 1.09004 * 109.47046 * 186.04447 * 4 2 1 35 35 H 1.08001 * 122.44919 * 0.04914 * 6 5 4 36 36 H 1.07997 * 124.52575 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 39 39 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 40 40 H 1.09005 * 113.73705 * 336.43429 * 16 14 13 41 41 H 1.08994 * 113.74699 * 107.63859 * 16 14 13 42 42 H 1.08997 * 113.77044 * 137.90682 * 17 16 14 43 43 H 1.08997 * 113.76603 * 269.19409 * 17 16 14 44 44 H 0.97001 * 120.00214 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2205 0.9729 6 6 0.5853 -2.8183 1.6257 7 6 0.4163 -4.1185 1.3584 8 16 1.5866 -4.6698 0.2459 9 6 2.3253 -3.0764 0.1600 10 6 3.4892 -2.7217 -0.6575 11 8 3.9163 -1.5823 -0.6461 12 7 4.0857 -3.6574 -1.4225 13 6 5.2493 -3.3030 -2.2390 14 6 5.7305 -4.5375 -3.0041 15 1 5.9131 -5.3949 -2.3563 16 6 6.8776 -4.2488 -3.9893 17 6 6.1344 -5.1740 -4.9700 18 7 4.9196 -4.8519 -4.1964 19 6 3.5786 -4.8468 -4.4736 20 1 2.8703 -4.5623 -3.7095 21 6 3.1295 -5.2072 -5.7367 22 7 3.9928 -5.5534 -6.6681 23 14 1.3002 -5.2008 -6.1146 24 1 0.9054 -3.8643 -6.6277 25 1 1.0032 -6.2324 -7.1407 26 1 0.5378 -5.5006 -4.8760 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6611 1.1756 35 1 -0.0579 -2.2779 2.3046 36 1 -0.3603 -4.7354 1.7858 37 1 3.7451 -4.5655 -1.4319 38 1 4.9721 -2.5217 -2.9468 39 1 6.0496 -2.9412 -1.5935 40 1 6.9245 -3.2099 -4.3160 41 1 7.8432 -4.6360 -3.6643 42 1 6.1142 -4.8027 -5.9946 43 1 6.4363 -6.2191 -4.9023 44 1 3.6791 -5.8048 -7.5508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038305885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = 42.960361 kcal Electronic energy + Delta-G solvation = -25549.097882 eV Core-core repulsion = 22015.486060 eV Total energy + Delta-G solvation = -3533.611822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96288 -39.85528 -39.02854 -37.22525 -35.44664 -34.18452 -31.49962 -30.02191 -29.69808 -28.45729 -28.01874 -25.27256 -25.13693 -23.84895 -22.57102 -22.16195 -20.97895 -19.95183 -19.17631 -18.42390 -17.16473 -17.08775 -16.74913 -16.56346 -16.23228 -15.96607 -15.88200 -15.62848 -15.21373 -15.09695 -14.77899 -14.39669 -13.89966 -13.78287 -13.46739 -13.28577 -13.22327 -13.05058 -12.93712 -12.68588 -12.61043 -12.59305 -12.53462 -12.44748 -12.26355 -11.83964 -11.79360 -11.50838 -11.32708 -10.83841 -10.77479 -10.08432 -9.69670 -9.50460 -9.14543 -8.86066 -7.85033 -5.16088 -0.43911 0.52497 0.97799 1.41056 1.42982 1.45338 1.52215 2.16022 2.31115 2.49087 3.22575 3.34898 3.40701 3.83255 3.92442 4.00499 4.07132 4.18596 4.28688 4.34544 4.37055 4.46415 4.52584 4.61450 4.65471 4.71503 4.73851 4.80504 4.89261 4.98294 5.00910 5.03945 5.07851 5.11744 5.33699 5.34938 5.36562 5.46977 5.63666 5.77036 6.00642 6.12955 6.20157 6.54484 6.98290 7.23878 7.67537 8.62180 9.31714 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004189 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.655428 B = 6682.215379 C = 7164.426589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.036 3.964 4 C 0.119 3.881 5 C -0.026 4.026 6 C -0.149 4.149 7 C -0.216 4.216 8 S 0.202 5.798 9 C -0.277 4.277 10 C 0.582 3.418 11 O -0.548 6.548 12 N -0.715 5.715 13 C 0.137 3.863 14 C 0.130 3.870 15 H 0.070 0.930 16 C -0.129 4.129 17 C 0.151 3.849 18 N -0.629 5.629 19 C -0.209 4.209 20 H 0.080 0.920 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.960 3.040 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.266 1.266 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.201 0.799 37 H 0.400 0.600 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 5.671 20.285 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.112 4.112 4 C -0.010 4.010 5 C -0.043 4.043 6 C -0.180 4.180 7 C -0.354 4.354 8 S 0.471 5.529 9 C -0.398 4.398 10 C 0.369 3.631 11 O -0.428 6.428 12 N -0.366 5.366 13 C 0.013 3.987 14 C 0.024 3.976 15 H 0.088 0.912 16 C -0.167 4.167 17 C 0.025 3.975 18 N -0.355 5.355 19 C -0.338 4.338 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.789 3.211 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.191 1.191 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.218 0.782 37 H 0.234 0.766 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.559 4.770 18.979 20.093 hybrid contribution -1.726 1.026 0.428 2.053 sum -6.285 5.796 19.407 21.207 Atomic orbital electron populations 1.22408 0.86728 1.02009 1.01002 1.61738 1.08400 1.14563 1.43448 1.22265 1.00391 0.87708 1.00843 1.20697 1.00798 0.87818 0.91690 1.19543 0.94020 0.96301 0.94437 1.20045 0.99335 0.94604 1.04038 1.25617 1.05572 1.00411 1.03767 1.83348 1.22339 1.08037 1.39186 1.24457 1.05328 0.99970 1.10026 1.17228 0.82039 0.84717 0.79119 1.90743 1.65433 1.20078 1.66595 1.45851 1.32591 1.12974 1.45155 1.21532 0.87049 0.97499 0.92637 1.22697 0.90454 0.94471 0.89978 0.91238 1.23554 0.96932 1.00353 0.95899 1.22168 0.84117 0.95167 0.96018 1.46405 1.01224 1.78284 1.09590 1.19226 0.82234 1.36337 0.95980 0.90262 1.25443 1.00971 1.03093 0.96561 1.69991 1.33373 1.53418 1.03502 0.85344 0.81254 0.76638 0.77855 1.22267 1.22072 1.19056 0.94005 0.91580 0.92128 0.92500 0.91275 0.94250 0.92250 0.90402 0.81483 0.78214 0.76585 0.93980 0.89942 0.90404 0.88654 0.94293 0.95895 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.33 127.69 1.19 1.77 16 2 N -0.56 -15.00 4.84 -953.44 -4.62 -19.62 16 3 C 0.04 0.83 9.57 127.69 1.22 2.05 16 4 C 0.12 3.01 4.35 85.56 0.37 3.38 16 5 C -0.03 -0.68 4.54 -20.42 -0.09 -0.77 16 6 C -0.15 -2.82 9.17 21.08 0.19 -2.63 16 7 C -0.22 -3.80 10.92 66.81 0.73 -3.07 16 8 S 0.20 4.79 22.16 -56.49 -1.25 3.54 16 9 C -0.28 -8.26 6.45 24.08 0.16 -8.10 16 10 C 0.58 20.90 7.78 86.42 0.67 21.58 16 11 O -0.55 -22.09 14.34 -4.33 -0.06 -22.15 16 12 N -0.72 -25.33 5.52 -467.17 -2.58 -27.91 16 13 C 0.14 4.99 5.54 86.38 0.48 5.47 16 14 C 0.13 4.88 4.33 45.09 0.20 5.08 16 15 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.13 -4.50 7.86 31.25 0.25 -4.26 16 17 C 0.15 6.98 7.52 86.48 0.65 7.63 16 18 N -0.63 -30.92 3.57 -694.01 -2.48 -33.41 16 19 C -0.21 -11.46 10.51 84.03 0.88 -10.58 16 20 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.95 -57.85 11.38 21.65 0.25 -57.60 16 23 Si 0.96 46.62 29.55 68.60 2.03 48.65 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 29 H 0.06 1.38 6.71 -2.39 -0.02 1.36 16 30 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 31 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 34 H 0.08 2.31 6.57 -2.38 -0.02 2.30 16 35 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.40 13.66 7.59 -92.71 -0.70 12.95 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 2.06 7.15 -2.39 -0.02 2.04 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -71.16 373.85 -1.06 -72.22 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.30 Total: 22.17 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 7.36 Total: 14.11 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -9.43 Total: -138.54 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.25 Total: 3.54 kcal Total: -71.16 -1.06 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038305885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.183 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds