Wall clock time and date at job start Tue Mar 31 2020 13:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00226 * 2 1 4 4 C 1.46904 * 110.99895 * 123.95094 * 2 1 3 5 5 C 1.50705 * 109.46963 * 66.04322 * 4 2 1 6 6 C 1.37473 * 123.34966 * 260.20221 * 5 4 2 7 7 C 1.33824 * 115.09890 * 180.27222 * 6 5 4 8 8 S 1.70618 * 110.95312 * 359.74802 * 7 6 5 9 9 C 1.36644 * 123.35044 * 80.00470 * 5 4 2 10 10 C 1.46579 * 125.45740 * 0.02562 * 9 5 4 11 11 O 1.21699 * 120.00221 * 8.80645 * 10 9 5 12 12 N 1.34781 * 120.00005 * 188.80628 * 10 9 5 13 13 C 1.46507 * 119.99799 * 358.95101 * 12 10 9 14 14 C 1.46496 * 120.00290 * 178.94561 * 12 10 9 15 15 C 1.53949 * 113.84051 * 141.35049 * 14 12 10 16 16 N 1.47583 * 86.11629 * 90.75524 * 15 14 12 17 17 C 1.36935 * 134.49416 * 204.64831 * 16 15 14 18 18 H 1.08000 * 119.99799 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99899 * 359.97438 * 17 16 15 20 20 N 1.31622 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47318 * 60.00123 * 21 19 17 23 23 H 1.48498 * 109.47484 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47277 * 300.00460 * 21 19 17 25 25 C 1.47582 * 91.01261 * 24.63864 * 16 15 14 26 26 H 1.08999 * 109.47310 * 296.05074 * 1 2 3 27 27 H 1.09001 * 109.46893 * 56.04500 * 1 2 3 28 28 H 1.08999 * 109.47816 * 176.04685 * 1 2 3 29 29 H 1.09003 * 109.46788 * 183.95614 * 3 2 1 30 30 H 1.08997 * 109.46649 * 303.94912 * 3 2 1 31 31 H 1.08998 * 109.47443 * 63.95246 * 3 2 1 32 32 H 1.09006 * 109.47095 * 306.04980 * 4 2 1 33 33 H 1.08998 * 109.47251 * 186.04321 * 4 2 1 34 34 H 1.07998 * 122.45198 * 0.04590 * 6 5 4 35 35 H 1.07997 * 124.52381 * 179.77384 * 7 6 5 36 36 H 1.09003 * 109.46921 * 276.34579 * 13 12 10 37 37 H 1.08999 * 109.46914 * 36.34490 * 13 12 10 38 38 H 1.08999 * 109.47129 * 156.34515 * 13 12 10 39 39 H 1.08998 * 112.94276 * 9.67421 * 14 12 10 40 40 H 1.08997 * 113.77126 * 205.06109 * 15 14 12 41 41 H 1.09008 * 113.76683 * 336.45898 * 15 14 12 42 42 H 0.97005 * 120.00029 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.77481 * 221.05277 * 25 16 15 44 44 H 1.09010 * 113.76331 * 89.65990 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 0.5822 -2.8170 1.6225 7 6 0.4168 -4.1187 1.3598 8 16 1.5946 -4.6730 0.2568 9 6 2.3251 -3.0765 0.1603 10 6 3.4896 -2.7221 -0.6563 11 8 4.0160 -1.6327 -0.5252 12 7 3.9776 -3.6029 -1.5522 13 6 3.3582 -4.9230 -1.6938 14 6 5.1272 -3.2402 -2.3847 15 6 6.1212 -4.3940 -2.6098 16 7 5.3240 -4.7132 -3.8100 17 6 5.1116 -5.8474 -4.5474 18 1 4.4624 -5.8170 -5.4099 19 6 5.7315 -7.0358 -4.1867 20 7 6.5231 -7.0727 -3.1358 21 14 5.4423 -8.5829 -5.1929 22 1 5.8891 -8.3551 -6.5907 23 1 6.2133 -9.7074 -4.6045 24 1 3.9951 -8.9160 -5.1840 25 6 4.8475 -3.3191 -3.8963 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3635 -1.0252 -0.0708 29 1 3.0828 1.3431 -0.0709 30 1 1.5898 1.9162 -0.8525 31 1 1.7044 1.8724 0.9232 32 1 1.5610 -0.3872 2.0629 33 1 3.0796 -0.6611 1.1757 34 1 -0.0633 -2.2757 2.2983 35 1 -0.3590 -4.7359 1.7883 36 1 3.7614 -5.5965 -0.9375 37 1 2.2797 -4.8341 -1.5634 38 1 3.5727 -5.3205 -2.6858 39 1 5.5997 -2.3084 -2.0738 40 1 7.1358 -4.0630 -2.8314 41 1 6.0824 -5.1639 -1.8391 42 1 6.9560 -7.9034 -2.8835 43 1 3.7918 -3.2307 -4.1530 44 1 5.4880 -2.6723 -4.4961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042821798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:59 Heat of formation + Delta-G solvation = 86.462454 kcal Electronic energy + Delta-G solvation = -26051.740346 eV Core-core repulsion = 22520.014917 eV Total energy + Delta-G solvation = -3531.725429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.89450 -38.70992 -37.22014 -36.19434 -34.03635 -32.10733 -30.22059 -28.24523 -27.57308 -27.37944 -26.17720 -24.77934 -24.19065 -23.04332 -21.55736 -21.18310 -18.64974 -18.23682 -17.68643 -16.73522 -15.90096 -15.68320 -15.53906 -15.02313 -14.92958 -14.79816 -14.56564 -14.20876 -13.73182 -13.47906 -12.88454 -12.84405 -12.66537 -12.55769 -12.40829 -12.31871 -12.27178 -11.87662 -11.63736 -11.48348 -11.37658 -11.25613 -11.24173 -10.87844 -10.63486 -10.23015 -10.14494 -9.79742 -9.55113 -9.41918 -8.82699 -8.68168 -8.41124 -8.22232 -7.89403 -6.90613 -5.81968 -3.15563 0.69959 1.67331 2.11783 2.46647 3.35425 3.41312 3.41999 3.44170 3.57089 4.17515 4.41128 4.87908 4.90772 5.09465 5.15357 5.20593 5.29764 5.33681 5.42722 5.45289 5.53572 5.55970 5.60060 5.66035 5.83926 5.87916 5.97324 6.03150 6.10652 6.14920 6.20380 6.39683 6.42165 6.49137 6.54822 6.72486 6.94236 7.06982 7.11979 7.17964 7.33167 7.53498 7.90468 7.98010 8.62481 8.99286 9.64974 10.54010 11.33793 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003869 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.939486 B = 7234.564144 C = 8165.723546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.031 3.969 4 C 0.114 3.886 5 C -0.033 4.033 6 C -0.146 4.146 7 C -0.276 4.276 8 S 0.243 5.757 9 C -0.238 4.238 10 C 0.586 3.414 11 O -0.530 6.530 12 N -0.574 5.574 13 C 0.060 3.940 14 C 0.093 3.907 15 C 0.152 3.848 16 N -0.609 5.609 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.106 3.894 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 9.596 9.947 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.253 5.253 3 C -0.117 4.117 4 C -0.015 4.015 5 C -0.049 4.049 6 C -0.178 4.178 7 C -0.413 4.413 8 S 0.514 5.486 9 C -0.360 4.360 10 C 0.374 3.626 11 O -0.409 6.409 12 N -0.304 5.304 13 C -0.085 4.085 14 C -0.012 4.012 15 C 0.026 3.974 16 N -0.336 5.336 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.210 1.210 25 C -0.021 4.021 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.442 8.145 8.861 16.607 hybrid contribution -0.896 0.662 0.842 1.397 sum -12.338 8.807 9.703 17.999 Atomic orbital electron populations 1.22426 0.88047 1.02218 0.99814 1.61822 1.07057 1.13568 1.42846 1.22326 1.01527 0.88207 0.99654 1.20813 1.02252 0.87834 0.90626 1.19155 0.94136 0.96121 0.95496 1.19756 0.99705 0.94469 1.03846 1.25895 1.08129 1.00709 1.06557 1.84118 1.20738 1.08846 1.34927 1.24537 1.04845 0.97960 1.08613 1.16914 0.82093 0.84223 0.79356 1.90722 1.60013 1.21902 1.68237 1.47234 1.31385 1.15021 1.36802 1.22258 0.94427 0.83965 1.07847 1.22896 0.87646 0.99766 0.90894 1.22658 0.92137 0.92304 0.90273 1.46205 1.52857 1.02930 1.31604 1.18965 1.23852 0.85076 1.07719 0.90300 1.24756 0.99176 0.97700 0.98342 1.69808 1.33581 1.26269 1.26688 0.86268 0.77603 0.82796 0.79483 1.21258 1.21593 1.21003 1.23028 0.98114 0.87700 0.93291 0.96163 0.91728 0.91370 0.90736 0.91659 0.96280 0.94732 0.87748 0.85144 0.82361 0.92197 0.92741 0.84638 0.88526 0.94392 0.90267 0.93508 0.93482 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.33 60.06 0.56 0.82 16 2 N -0.53 -7.08 5.01 -252.72 -1.27 -8.35 16 3 C 0.03 0.35 9.57 60.06 0.57 0.93 16 4 C 0.11 1.53 4.44 -4.97 -0.02 1.51 16 5 C -0.03 -0.47 4.54 -105.47 -0.48 -0.95 16 6 C -0.15 -1.73 9.16 -41.41 -0.38 -2.11 16 7 C -0.28 -3.10 10.92 29.18 0.32 -2.79 16 8 S 0.24 3.17 17.92 -107.50 -1.93 1.24 16 9 C -0.24 -3.74 6.24 -36.80 -0.23 -3.97 16 10 C 0.59 10.77 7.62 -12.90 -0.10 10.67 16 11 O -0.53 -10.53 13.93 5.19 0.07 -10.46 16 12 N -0.57 -10.81 3.09 -177.32 -0.55 -11.36 16 13 C 0.06 1.08 8.01 59.85 0.48 1.56 16 14 C 0.09 1.83 4.53 -70.14 -0.32 1.52 16 15 C 0.15 3.46 6.77 -2.97 -0.02 3.44 16 16 N -0.61 -14.58 2.26 -178.07 -0.40 -14.98 16 17 C -0.23 -5.97 9.68 -15.06 -0.15 -6.12 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 20 N -0.92 -25.55 11.38 55.49 0.63 -24.92 16 21 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.11 2.15 8.39 -2.98 -0.02 2.13 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 0.80 6.70 -51.93 -0.35 0.45 16 29 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.10 1.60 6.38 -51.93 -0.33 1.27 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 37 H 0.06 0.87 4.52 -22.69 -0.10 0.77 16 38 H 0.14 2.88 5.07 -51.93 -0.26 2.62 16 39 H 0.10 1.87 7.21 -51.93 -0.37 1.49 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.97 6.90 -51.92 -0.36 1.61 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -29.43 359.16 -9.30 -38.73 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.37 Total: 2.15 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.12 Total: 6.49 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -1.58 Total: -59.61 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.93 Total: 1.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.43 -9.30 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042821798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.197 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds